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@@ -0,0 +1 @@ +/CIRIquant-1.1.2.tar.gz diff --git a/python-ciriquant.spec b/python-ciriquant.spec new file mode 100644 index 0000000..9778157 --- /dev/null +++ b/python-ciriquant.spec @@ -0,0 +1,184 @@ +%global _empty_manifest_terminate_build 0 +Name: python-CIRIquant +Version: 1.1.2 +Release: 1 +Summary: circular RNA quantification pipeline +License: MIT +URL: https://github.com/bioinfo-biols/CIRIquant +Source0: https://mirrors.aliyun.com/pypi/web/packages/a3/6e/b5cade7b9790f036fc281aa12f8536d483a3c60f2db30d8b2131be7dae86/CIRIquant-1.1.2.tar.gz +BuildArch: noarch + +Requires: python3-argparse +Requires: python3-PyYAML +Requires: python3-pysam +Requires: python3-numpy +Requires: python3-scipy +Requires: python3-scikit-learn +Requires: python3-numexpr + +%description +## CIRIquant ## + +[](https://staging.travis-ci.com/bioinfo-biols/CIRIquant) + +[](https://github.com/bioinfo-biols/CIRIquant/blob/master/LICENSE) + + + + +CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data + +### Documentation ### + +Documentation is available online at [https://ciriquant-cookbook.readthedocs.io/en/latest/index.html](https://ciriquant-cookbook.readthedocs.io/en/latest/index.html) + +### Author ### + +Authors: Jinyang Zhang(zhangjinyang@biols.ac.cn), Fangqing Zhao(zhfq@biols.ac.cn) + +Maintainer: Jinyang Zhang + +### Release Notes ### + +- Version 1.1: Added support for stranded library and GFF3 format input. +- Version 1.0: The first released version of CIRIquant. + +### License ### + +The code is released under the MIT License. See the `LICENSE` file for more detail. + +### Citing CIRIquant + +- Zhang, J., Chen, S., Yang, J. et al. Accurate quantification of circular RNAs identifies extensive circular isoform switching events. Nat Commun 11, 90 (2020) [doi:10.1038/s41467-019-13840-9](https://doi.org/10.1038/s41467-019-13840-9) + + + + +%package -n python3-CIRIquant +Summary: circular RNA quantification pipeline +Provides: python-CIRIquant +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-CIRIquant +## CIRIquant ## + +[](https://staging.travis-ci.com/bioinfo-biols/CIRIquant) + +[](https://github.com/bioinfo-biols/CIRIquant/blob/master/LICENSE) + + + + +CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data + +### Documentation ### + +Documentation is available online at [https://ciriquant-cookbook.readthedocs.io/en/latest/index.html](https://ciriquant-cookbook.readthedocs.io/en/latest/index.html) + +### Author ### + +Authors: Jinyang Zhang(zhangjinyang@biols.ac.cn), Fangqing Zhao(zhfq@biols.ac.cn) + +Maintainer: Jinyang Zhang + +### Release Notes ### + +- Version 1.1: Added support for stranded library and GFF3 format input. +- Version 1.0: The first released version of CIRIquant. + +### License ### + +The code is released under the MIT License. See the `LICENSE` file for more detail. + +### Citing CIRIquant + +- Zhang, J., Chen, S., Yang, J. et al. Accurate quantification of circular RNAs identifies extensive circular isoform switching events. Nat Commun 11, 90 (2020) [doi:10.1038/s41467-019-13840-9](https://doi.org/10.1038/s41467-019-13840-9) + + + + +%package help +Summary: Development documents and examples for CIRIquant +Provides: python3-CIRIquant-doc +%description help +## CIRIquant ## + +[](https://staging.travis-ci.com/bioinfo-biols/CIRIquant) + +[](https://github.com/bioinfo-biols/CIRIquant/blob/master/LICENSE) + + + + +CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data + +### Documentation ### + +Documentation is available online at [https://ciriquant-cookbook.readthedocs.io/en/latest/index.html](https://ciriquant-cookbook.readthedocs.io/en/latest/index.html) + +### Author ### + +Authors: Jinyang Zhang(zhangjinyang@biols.ac.cn), Fangqing Zhao(zhfq@biols.ac.cn) + +Maintainer: Jinyang Zhang + +### Release Notes ### + +- Version 1.1: Added support for stranded library and GFF3 format input. +- Version 1.0: The first released version of CIRIquant. + +### License ### + +The code is released under the MIT License. See the `LICENSE` file for more detail. + +### Citing CIRIquant + +- Zhang, J., Chen, S., Yang, J. et al. Accurate quantification of circular RNAs identifies extensive circular isoform switching events. Nat Commun 11, 90 (2020) [doi:10.1038/s41467-019-13840-9](https://doi.org/10.1038/s41467-019-13840-9) + + + + +%prep +%autosetup -n CIRIquant-1.1.2 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-CIRIquant -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Tue Jun 20 2023 Python_Bot <Python_Bot@openeuler.org> - 1.1.2-1 +- Package Spec generated @@ -0,0 +1 @@ +955e60592d3c45c8fcf3bfb8bdb330d8 CIRIquant-1.1.2.tar.gz |