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%global _empty_manifest_terminate_build 0
Name: python-CIRIquant
Version: 1.1.2
Release: 1
Summary: circular RNA quantification pipeline
License: MIT
URL: https://github.com/bioinfo-biols/CIRIquant
Source0: https://mirrors.aliyun.com/pypi/web/packages/a3/6e/b5cade7b9790f036fc281aa12f8536d483a3c60f2db30d8b2131be7dae86/CIRIquant-1.1.2.tar.gz
BuildArch: noarch
Requires: python3-argparse
Requires: python3-PyYAML
Requires: python3-pysam
Requires: python3-numpy
Requires: python3-scipy
Requires: python3-scikit-learn
Requires: python3-numexpr
%description
## CIRIquant ##
[](https://staging.travis-ci.com/bioinfo-biols/CIRIquant)
[](https://github.com/bioinfo-biols/CIRIquant/blob/master/LICENSE)
CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data
### Documentation ###
Documentation is available online at [https://ciriquant-cookbook.readthedocs.io/en/latest/index.html](https://ciriquant-cookbook.readthedocs.io/en/latest/index.html)
### Author ###
Authors: Jinyang Zhang(zhangjinyang@biols.ac.cn), Fangqing Zhao(zhfq@biols.ac.cn)
Maintainer: Jinyang Zhang
### Release Notes ###
- Version 1.1: Added support for stranded library and GFF3 format input.
- Version 1.0: The first released version of CIRIquant.
### License ###
The code is released under the MIT License. See the `LICENSE` file for more detail.
### Citing CIRIquant
- Zhang, J., Chen, S., Yang, J. et al. Accurate quantification of circular RNAs identifies extensive circular isoform switching events. Nat Commun 11, 90 (2020) [doi:10.1038/s41467-019-13840-9](https://doi.org/10.1038/s41467-019-13840-9)
%package -n python3-CIRIquant
Summary: circular RNA quantification pipeline
Provides: python-CIRIquant
BuildRequires: python3-devel
BuildRequires: python3-setuptools
BuildRequires: python3-pip
%description -n python3-CIRIquant
## CIRIquant ##
[](https://staging.travis-ci.com/bioinfo-biols/CIRIquant)
[](https://github.com/bioinfo-biols/CIRIquant/blob/master/LICENSE)
CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data
### Documentation ###
Documentation is available online at [https://ciriquant-cookbook.readthedocs.io/en/latest/index.html](https://ciriquant-cookbook.readthedocs.io/en/latest/index.html)
### Author ###
Authors: Jinyang Zhang(zhangjinyang@biols.ac.cn), Fangqing Zhao(zhfq@biols.ac.cn)
Maintainer: Jinyang Zhang
### Release Notes ###
- Version 1.1: Added support for stranded library and GFF3 format input.
- Version 1.0: The first released version of CIRIquant.
### License ###
The code is released under the MIT License. See the `LICENSE` file for more detail.
### Citing CIRIquant
- Zhang, J., Chen, S., Yang, J. et al. Accurate quantification of circular RNAs identifies extensive circular isoform switching events. Nat Commun 11, 90 (2020) [doi:10.1038/s41467-019-13840-9](https://doi.org/10.1038/s41467-019-13840-9)
%package help
Summary: Development documents and examples for CIRIquant
Provides: python3-CIRIquant-doc
%description help
## CIRIquant ##
[](https://staging.travis-ci.com/bioinfo-biols/CIRIquant)
[](https://github.com/bioinfo-biols/CIRIquant/blob/master/LICENSE)
CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data
### Documentation ###
Documentation is available online at [https://ciriquant-cookbook.readthedocs.io/en/latest/index.html](https://ciriquant-cookbook.readthedocs.io/en/latest/index.html)
### Author ###
Authors: Jinyang Zhang(zhangjinyang@biols.ac.cn), Fangqing Zhao(zhfq@biols.ac.cn)
Maintainer: Jinyang Zhang
### Release Notes ###
- Version 1.1: Added support for stranded library and GFF3 format input.
- Version 1.0: The first released version of CIRIquant.
### License ###
The code is released under the MIT License. See the `LICENSE` file for more detail.
### Citing CIRIquant
- Zhang, J., Chen, S., Yang, J. et al. Accurate quantification of circular RNAs identifies extensive circular isoform switching events. Nat Commun 11, 90 (2020) [doi:10.1038/s41467-019-13840-9](https://doi.org/10.1038/s41467-019-13840-9)
%prep
%autosetup -n CIRIquant-1.1.2
%build
%py3_build
%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .
%files -n python3-CIRIquant -f filelist.lst
%dir %{python3_sitelib}/*
%files help -f doclist.lst
%{_docdir}/*
%changelog
* Tue Jun 20 2023 Python_Bot <Python_Bot@openeuler.org> - 1.1.2-1
- Package Spec generated
|
