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diff --git a/python-amphipathic.spec b/python-amphipathic.spec new file mode 100644 index 0000000..17dc018 --- /dev/null +++ b/python-amphipathic.spec @@ -0,0 +1,109 @@ +%global _empty_manifest_terminate_build 0 +Name: python-amphipathic +Version: 1.0.11 +Release: 1 +Summary: This is a library to evaluate an aminoacid sequence and determine an amphipathic index for each alpha helix or beta sheet. +License: MIT +URL: https://github.com/ecolell/amphipathic +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/ad/36/4652c6e01ba03c348529ea7c6082e76d19cbc130d5c02af89a94eed66a10/amphipathic-1.0.11.tar.gz +BuildArch: noarch + +Requires: python3-beautifulsoup4 +Requires: python3-biopython +Requires: python3-cachetools +Requires: python3-ndg-httpsclient +Requires: python3-pyOpenSSL +Requires: python3-pyasn1 +Requires: python3-requests[security] + +%description +[](https://raw.githubusercontent.com/ecolell/amphipathic/master/LICENSE) [](https://pypi.python.org/pypi/amphipathic/) [](https://travis-ci.org/ecolell/amphipathic) [](https://coveralls.io/r/ecolell/amphipathic) [](http://badge.fury.io/py/amphipathic) +This library can analyze an aminoacid sequence and gives a list of secondary structures with the respective hydrophobicity mean[1] and amphipathic index[1]. +When it is useful to calculate this measurements on a secondary structure? +By looking into this measurements for an alpha helix, you can test some hiphotesis related with: +1. the context of a **globular soluble protein**: + - **hydrofobic core**, it will be no amphipathic and hydrophobic + - **interface between core and the superficial region**, it will be amphiphatic + - **superficial region**, it will be no amphipathic and hydrophilic +2. the interactions of a **trans-membrane protein**: + - **on lipids interaction**, it will be not amphipathic and hidrophobic + - **on multiple trans-membrane helix interacion** (homomeric or heteromeric), it will be amphipathic building like an *ionic channel*. + +%package -n python3-amphipathic +Summary: This is a library to evaluate an aminoacid sequence and determine an amphipathic index for each alpha helix or beta sheet. +Provides: python-amphipathic +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-amphipathic +[](https://raw.githubusercontent.com/ecolell/amphipathic/master/LICENSE) [](https://pypi.python.org/pypi/amphipathic/) [](https://travis-ci.org/ecolell/amphipathic) [](https://coveralls.io/r/ecolell/amphipathic) [](http://badge.fury.io/py/amphipathic) +This library can analyze an aminoacid sequence and gives a list of secondary structures with the respective hydrophobicity mean[1] and amphipathic index[1]. +When it is useful to calculate this measurements on a secondary structure? +By looking into this measurements for an alpha helix, you can test some hiphotesis related with: +1. the context of a **globular soluble protein**: + - **hydrofobic core**, it will be no amphipathic and hydrophobic + - **interface between core and the superficial region**, it will be amphiphatic + - **superficial region**, it will be no amphipathic and hydrophilic +2. the interactions of a **trans-membrane protein**: + - **on lipids interaction**, it will be not amphipathic and hidrophobic + - **on multiple trans-membrane helix interacion** (homomeric or heteromeric), it will be amphipathic building like an *ionic channel*. + +%package help +Summary: Development documents and examples for amphipathic +Provides: python3-amphipathic-doc +%description help +[](https://raw.githubusercontent.com/ecolell/amphipathic/master/LICENSE) [](https://pypi.python.org/pypi/amphipathic/) [](https://travis-ci.org/ecolell/amphipathic) [](https://coveralls.io/r/ecolell/amphipathic) [](http://badge.fury.io/py/amphipathic) +This library can analyze an aminoacid sequence and gives a list of secondary structures with the respective hydrophobicity mean[1] and amphipathic index[1]. +When it is useful to calculate this measurements on a secondary structure? +By looking into this measurements for an alpha helix, you can test some hiphotesis related with: +1. the context of a **globular soluble protein**: + - **hydrofobic core**, it will be no amphipathic and hydrophobic + - **interface between core and the superficial region**, it will be amphiphatic + - **superficial region**, it will be no amphipathic and hydrophilic +2. the interactions of a **trans-membrane protein**: + - **on lipids interaction**, it will be not amphipathic and hidrophobic + - **on multiple trans-membrane helix interacion** (homomeric or heteromeric), it will be amphipathic building like an *ionic channel*. + +%prep +%autosetup -n amphipathic-1.0.11 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-amphipathic -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Mon May 15 2023 Python_Bot <Python_Bot@openeuler.org> - 1.0.11-1 +- Package Spec generated |