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%global _empty_manifest_terminate_build 0
Name: python-amphipathic
Version: 1.0.11
Release: 1
Summary: This is a library to evaluate an aminoacid sequence and determine an amphipathic index for each alpha helix or beta sheet.
License: MIT
URL: https://github.com/ecolell/amphipathic
Source0: https://mirrors.nju.edu.cn/pypi/web/packages/ad/36/4652c6e01ba03c348529ea7c6082e76d19cbc130d5c02af89a94eed66a10/amphipathic-1.0.11.tar.gz
BuildArch: noarch
Requires: python3-beautifulsoup4
Requires: python3-biopython
Requires: python3-cachetools
Requires: python3-ndg-httpsclient
Requires: python3-pyOpenSSL
Requires: python3-pyasn1
Requires: python3-requests[security]
%description
[](https://raw.githubusercontent.com/ecolell/amphipathic/master/LICENSE) [](https://pypi.python.org/pypi/amphipathic/) [](https://travis-ci.org/ecolell/amphipathic) [](https://coveralls.io/r/ecolell/amphipathic) [](http://badge.fury.io/py/amphipathic)
This library can analyze an aminoacid sequence and gives a list of secondary structures with the respective hydrophobicity mean[1] and amphipathic index[1].
When it is useful to calculate this measurements on a secondary structure?
By looking into this measurements for an alpha helix, you can test some hiphotesis related with:
1. the context of a **globular soluble protein**:
- **hydrofobic core**, it will be no amphipathic and hydrophobic
- **interface between core and the superficial region**, it will be amphiphatic
- **superficial region**, it will be no amphipathic and hydrophilic
2. the interactions of a **trans-membrane protein**:
- **on lipids interaction**, it will be not amphipathic and hidrophobic
- **on multiple trans-membrane helix interacion** (homomeric or heteromeric), it will be amphipathic building like an *ionic channel*.
%package -n python3-amphipathic
Summary: This is a library to evaluate an aminoacid sequence and determine an amphipathic index for each alpha helix or beta sheet.
Provides: python-amphipathic
BuildRequires: python3-devel
BuildRequires: python3-setuptools
BuildRequires: python3-pip
%description -n python3-amphipathic
[](https://raw.githubusercontent.com/ecolell/amphipathic/master/LICENSE) [](https://pypi.python.org/pypi/amphipathic/) [](https://travis-ci.org/ecolell/amphipathic) [](https://coveralls.io/r/ecolell/amphipathic) [](http://badge.fury.io/py/amphipathic)
This library can analyze an aminoacid sequence and gives a list of secondary structures with the respective hydrophobicity mean[1] and amphipathic index[1].
When it is useful to calculate this measurements on a secondary structure?
By looking into this measurements for an alpha helix, you can test some hiphotesis related with:
1. the context of a **globular soluble protein**:
- **hydrofobic core**, it will be no amphipathic and hydrophobic
- **interface between core and the superficial region**, it will be amphiphatic
- **superficial region**, it will be no amphipathic and hydrophilic
2. the interactions of a **trans-membrane protein**:
- **on lipids interaction**, it will be not amphipathic and hidrophobic
- **on multiple trans-membrane helix interacion** (homomeric or heteromeric), it will be amphipathic building like an *ionic channel*.
%package help
Summary: Development documents and examples for amphipathic
Provides: python3-amphipathic-doc
%description help
[](https://raw.githubusercontent.com/ecolell/amphipathic/master/LICENSE) [](https://pypi.python.org/pypi/amphipathic/) [](https://travis-ci.org/ecolell/amphipathic) [](https://coveralls.io/r/ecolell/amphipathic) [](http://badge.fury.io/py/amphipathic)
This library can analyze an aminoacid sequence and gives a list of secondary structures with the respective hydrophobicity mean[1] and amphipathic index[1].
When it is useful to calculate this measurements on a secondary structure?
By looking into this measurements for an alpha helix, you can test some hiphotesis related with:
1. the context of a **globular soluble protein**:
- **hydrofobic core**, it will be no amphipathic and hydrophobic
- **interface between core and the superficial region**, it will be amphiphatic
- **superficial region**, it will be no amphipathic and hydrophilic
2. the interactions of a **trans-membrane protein**:
- **on lipids interaction**, it will be not amphipathic and hidrophobic
- **on multiple trans-membrane helix interacion** (homomeric or heteromeric), it will be amphipathic building like an *ionic channel*.
%prep
%autosetup -n amphipathic-1.0.11
%build
%py3_build
%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .
%files -n python3-amphipathic -f filelist.lst
%dir %{python3_sitelib}/*
%files help -f doclist.lst
%{_docdir}/*
%changelog
* Mon May 15 2023 Python_Bot <Python_Bot@openeuler.org> - 1.0.11-1
- Package Spec generated
|
