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| author | CoprDistGit <infra@openeuler.org> | 2023-05-29 10:12:58 +0000 |
|---|---|---|
| committer | CoprDistGit <infra@openeuler.org> | 2023-05-29 10:12:58 +0000 |
| commit | 48a3df2be5cd7a14ca30d6fa5533b1a260ec8657 (patch) | |
| tree | 31bf1a13d8c17b5d9205f6b0de22e4452c914c9f | |
| parent | ebae1099fa696893271c798d318bc487afc8b647 (diff) | |
automatic import of python-atacfragqc
| -rw-r--r-- | .gitignore | 1 | ||||
| -rw-r--r-- | python-atacfragqc.spec | 156 | ||||
| -rw-r--r-- | sources | 1 |
3 files changed, 158 insertions, 0 deletions
@@ -0,0 +1 @@ +/ATACFragQC-0.4.6.tar.gz diff --git a/python-atacfragqc.spec b/python-atacfragqc.spec new file mode 100644 index 0000000..e87a8ae --- /dev/null +++ b/python-atacfragqc.spec @@ -0,0 +1,156 @@ +%global _empty_manifest_terminate_build 0 +Name: python-ATACFragQC +Version: 0.4.6 +Release: 1 +Summary: Fragment Quality Control for ATAC-seq +License: MIT +URL: https://github.com/0CBH0/ATACFragQC +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/83/b4/d670c2a7fdd5d9e594ddea6f0646bca46cddfda7a09624befef8ea4a3c35/ATACFragQC-0.4.6.tar.gz +BuildArch: noarch + + +%description +# ATACFragQC
+
+The Python toolkits designed to control the fragment quality of Bulk/SingCell ATAC-seq.
+
+## Installation
+~~~
+python3 -m pip install --upgrade ATACFragQC
+~~~
+
+## Usage
+~~~
+# Basic usage
+ATACFragQC [options] -i <input.bam> -r <reference.gtf>
+
+# For more information
+ATACFragQC -h
+~~~
+
+## Features
+* The distrubution of fragments in chromosomes
+* The distrubution of fragment lengths
+* The distrubution of fragments around transcription start sites (TSSs)
+* Other feature would be supported in the future ...
+
+## Overview
+
+
+
+ + +%package -n python3-ATACFragQC +Summary: Fragment Quality Control for ATAC-seq +Provides: python-ATACFragQC +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-ATACFragQC +# ATACFragQC
+
+The Python toolkits designed to control the fragment quality of Bulk/SingCell ATAC-seq.
+
+## Installation
+~~~
+python3 -m pip install --upgrade ATACFragQC
+~~~
+
+## Usage
+~~~
+# Basic usage
+ATACFragQC [options] -i <input.bam> -r <reference.gtf>
+
+# For more information
+ATACFragQC -h
+~~~
+
+## Features
+* The distrubution of fragments in chromosomes
+* The distrubution of fragment lengths
+* The distrubution of fragments around transcription start sites (TSSs)
+* Other feature would be supported in the future ...
+
+## Overview
+
+
+
+ + +%package help +Summary: Development documents and examples for ATACFragQC +Provides: python3-ATACFragQC-doc +%description help +# ATACFragQC
+
+The Python toolkits designed to control the fragment quality of Bulk/SingCell ATAC-seq.
+
+## Installation
+~~~
+python3 -m pip install --upgrade ATACFragQC
+~~~
+
+## Usage
+~~~
+# Basic usage
+ATACFragQC [options] -i <input.bam> -r <reference.gtf>
+
+# For more information
+ATACFragQC -h
+~~~
+
+## Features
+* The distrubution of fragments in chromosomes
+* The distrubution of fragment lengths
+* The distrubution of fragments around transcription start sites (TSSs)
+* Other feature would be supported in the future ...
+
+## Overview
+
+
+
+ + +%prep +%autosetup -n ATACFragQC-0.4.6 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-ATACFragQC -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Mon May 29 2023 Python_Bot <Python_Bot@openeuler.org> - 0.4.6-1 +- Package Spec generated @@ -0,0 +1 @@ +19c71628c62d3e665ba3a403f6ec274c ATACFragQC-0.4.6.tar.gz |