1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
1001
1002
1003
1004
1005
1006
1007
1008
1009
1010
1011
1012
1013
1014
1015
1016
1017
1018
1019
1020
1021
1022
1023
1024
1025
1026
1027
1028
1029
1030
1031
1032
1033
1034
1035
1036
1037
1038
1039
1040
1041
1042
1043
1044
1045
1046
1047
1048
1049
1050
1051
1052
1053
1054
1055
1056
1057
1058
1059
1060
1061
1062
1063
1064
1065
1066
1067
1068
1069
1070
1071
1072
1073
1074
1075
1076
1077
1078
1079
1080
1081
1082
1083
1084
1085
1086
1087
1088
1089
1090
1091
1092
1093
1094
1095
1096
1097
1098
1099
1100
1101
1102
1103
1104
1105
1106
1107
1108
1109
1110
1111
1112
1113
1114
1115
1116
1117
1118
1119
1120
1121
1122
1123
1124
1125
1126
1127
1128
1129
1130
1131
1132
1133
1134
1135
1136
1137
1138
1139
1140
1141
1142
1143
1144
1145
1146
1147
1148
1149
1150
1151
1152
1153
1154
1155
1156
1157
1158
1159
1160
1161
1162
1163
1164
1165
1166
1167
1168
1169
1170
1171
1172
1173
1174
1175
1176
1177
1178
1179
1180
1181
1182
1183
1184
1185
1186
1187
1188
1189
1190
1191
1192
1193
1194
1195
1196
1197
1198
1199
1200
1201
1202
1203
1204
1205
1206
1207
1208
1209
1210
1211
1212
1213
1214
1215
1216
1217
1218
1219
1220
1221
1222
1223
1224
1225
1226
1227
1228
1229
1230
1231
1232
1233
1234
1235
1236
1237
1238
1239
1240
1241
1242
1243
1244
1245
1246
1247
1248
1249
1250
1251
1252
1253
1254
1255
1256
1257
1258
1259
1260
1261
1262
1263
1264
1265
1266
1267
1268
1269
1270
1271
1272
1273
1274
1275
1276
1277
1278
1279
1280
1281
1282
1283
1284
1285
1286
1287
1288
1289
1290
1291
1292
1293
1294
1295
1296
1297
1298
1299
1300
1301
1302
1303
1304
1305
1306
1307
1308
1309
1310
1311
1312
1313
1314
1315
1316
1317
1318
1319
1320
1321
1322
1323
1324
1325
1326
1327
1328
1329
1330
1331
1332
1333
1334
1335
1336
1337
1338
1339
1340
1341
1342
1343
1344
1345
1346
1347
1348
1349
1350
1351
1352
1353
1354
1355
1356
1357
1358
1359
1360
1361
1362
1363
1364
1365
1366
1367
1368
1369
1370
1371
1372
1373
1374
1375
1376
1377
1378
1379
1380
1381
1382
1383
1384
1385
1386
1387
1388
1389
1390
1391
1392
1393
1394
1395
1396
1397
1398
1399
1400
1401
1402
1403
1404
1405
1406
1407
1408
1409
1410
1411
1412
1413
1414
1415
1416
1417
1418
1419
1420
1421
1422
1423
1424
1425
1426
1427
1428
1429
1430
1431
1432
1433
1434
1435
1436
1437
1438
1439
1440
1441
1442
1443
1444
1445
1446
1447
1448
1449
1450
1451
1452
1453
1454
1455
1456
1457
1458
1459
1460
1461
1462
1463
1464
1465
1466
1467
1468
1469
1470
1471
1472
1473
1474
1475
1476
1477
1478
1479
1480
1481
1482
1483
1484
1485
1486
1487
1488
1489
1490
1491
1492
1493
1494
1495
1496
1497
1498
1499
1500
1501
1502
1503
1504
1505
1506
1507
1508
1509
1510
1511
1512
1513
1514
1515
1516
1517
1518
1519
1520
1521
1522
1523
1524
1525
1526
1527
1528
1529
1530
1531
1532
1533
1534
1535
1536
1537
1538
1539
1540
1541
1542
1543
1544
1545
1546
1547
1548
1549
1550
1551
1552
1553
1554
1555
1556
1557
1558
1559
1560
1561
1562
1563
1564
1565
1566
1567
1568
1569
1570
1571
1572
1573
1574
1575
1576
1577
1578
1579
1580
1581
1582
1583
1584
1585
1586
1587
1588
1589
1590
1591
1592
1593
1594
1595
1596
1597
1598
1599
1600
1601
1602
1603
1604
1605
1606
1607
1608
1609
1610
1611
1612
1613
1614
1615
1616
1617
1618
1619
1620
1621
1622
1623
1624
1625
1626
1627
1628
1629
1630
1631
1632
1633
1634
1635
1636
1637
1638
1639
1640
1641
1642
1643
1644
1645
1646
1647
1648
1649
1650
1651
1652
1653
1654
1655
1656
1657
1658
1659
1660
1661
1662
1663
1664
1665
1666
1667
1668
1669
1670
1671
1672
1673
1674
1675
1676
1677
1678
1679
1680
1681
1682
1683
1684
1685
1686
1687
1688
1689
1690
1691
1692
1693
1694
1695
1696
1697
1698
1699
1700
1701
1702
1703
1704
1705
1706
1707
1708
1709
1710
1711
1712
1713
1714
1715
1716
1717
1718
1719
1720
1721
1722
1723
1724
1725
1726
1727
1728
1729
1730
1731
1732
1733
1734
1735
1736
1737
1738
1739
1740
1741
1742
1743
1744
1745
1746
1747
1748
1749
1750
1751
1752
1753
1754
1755
1756
1757
1758
1759
1760
1761
1762
1763
1764
1765
1766
1767
1768
1769
1770
1771
1772
1773
1774
1775
1776
1777
1778
1779
1780
1781
1782
1783
1784
1785
1786
1787
1788
1789
1790
1791
1792
1793
1794
1795
1796
1797
1798
1799
1800
1801
1802
1803
1804
1805
1806
1807
1808
1809
1810
1811
1812
1813
1814
1815
1816
1817
1818
1819
1820
1821
1822
1823
1824
1825
1826
1827
1828
1829
1830
1831
1832
1833
1834
1835
1836
1837
1838
1839
1840
1841
1842
1843
1844
1845
1846
1847
1848
1849
1850
1851
1852
1853
1854
1855
1856
1857
1858
1859
1860
1861
1862
1863
1864
1865
1866
1867
1868
1869
1870
1871
1872
1873
1874
1875
1876
1877
1878
1879
1880
1881
1882
1883
1884
1885
1886
1887
1888
1889
1890
1891
1892
1893
1894
1895
1896
1897
1898
1899
1900
1901
1902
1903
1904
1905
1906
1907
1908
1909
1910
1911
1912
1913
1914
1915
1916
1917
1918
1919
1920
1921
1922
1923
1924
1925
1926
1927
1928
1929
1930
1931
1932
1933
1934
1935
1936
1937
1938
1939
1940
1941
1942
1943
1944
1945
1946
1947
1948
1949
1950
1951
1952
1953
1954
1955
1956
1957
1958
1959
1960
1961
1962
1963
1964
1965
1966
1967
1968
1969
1970
1971
1972
1973
1974
1975
1976
1977
1978
1979
1980
1981
1982
1983
1984
1985
1986
1987
1988
1989
1990
1991
1992
1993
1994
1995
1996
1997
1998
1999
2000
2001
2002
2003
2004
2005
2006
2007
2008
2009
2010
2011
2012
2013
2014
2015
2016
2017
2018
2019
2020
2021
2022
2023
2024
2025
2026
2027
2028
2029
2030
2031
2032
2033
2034
2035
2036
2037
2038
2039
2040
2041
2042
2043
2044
2045
2046
2047
2048
2049
2050
2051
2052
2053
2054
2055
2056
2057
2058
2059
2060
2061
2062
2063
2064
2065
2066
2067
2068
2069
2070
2071
2072
2073
2074
2075
2076
2077
2078
2079
2080
2081
2082
2083
2084
2085
2086
2087
2088
2089
2090
2091
2092
2093
2094
2095
2096
2097
2098
2099
2100
2101
2102
2103
2104
2105
2106
2107
2108
2109
2110
2111
2112
2113
2114
2115
2116
2117
2118
2119
2120
2121
2122
2123
2124
2125
2126
2127
2128
2129
2130
2131
2132
2133
2134
2135
2136
2137
2138
2139
2140
2141
2142
2143
2144
2145
2146
2147
2148
2149
2150
2151
2152
2153
2154
2155
2156
2157
2158
2159
2160
2161
2162
2163
2164
2165
2166
2167
2168
2169
2170
2171
2172
2173
2174
2175
2176
2177
2178
2179
2180
2181
2182
2183
2184
2185
2186
2187
2188
2189
2190
2191
2192
2193
2194
2195
2196
2197
2198
2199
2200
2201
2202
2203
2204
2205
2206
2207
2208
2209
2210
2211
2212
2213
2214
2215
2216
2217
2218
2219
2220
2221
2222
2223
2224
2225
2226
2227
2228
2229
2230
2231
2232
2233
2234
2235
2236
2237
2238
2239
2240
2241
2242
2243
2244
2245
2246
2247
2248
2249
2250
2251
2252
2253
2254
2255
2256
2257
2258
2259
2260
2261
2262
2263
2264
2265
2266
2267
2268
2269
2270
2271
2272
2273
2274
2275
2276
2277
2278
2279
2280
2281
2282
2283
2284
2285
2286
2287
2288
2289
2290
2291
2292
2293
2294
2295
2296
2297
2298
2299
2300
2301
2302
2303
2304
2305
2306
2307
2308
2309
2310
2311
2312
2313
2314
2315
2316
2317
2318
2319
2320
2321
2322
2323
2324
2325
2326
2327
2328
2329
2330
2331
2332
2333
2334
2335
2336
2337
2338
2339
2340
2341
2342
2343
2344
2345
2346
2347
2348
2349
2350
2351
2352
2353
2354
2355
2356
2357
2358
2359
2360
2361
2362
2363
2364
2365
2366
2367
2368
2369
2370
2371
2372
2373
2374
2375
2376
2377
2378
2379
2380
2381
2382
2383
2384
2385
2386
2387
2388
2389
2390
2391
2392
2393
2394
2395
2396
2397
2398
2399
2400
2401
2402
2403
2404
2405
2406
2407
2408
2409
2410
2411
2412
2413
2414
2415
2416
2417
2418
2419
2420
2421
2422
2423
2424
2425
2426
2427
2428
2429
2430
2431
2432
2433
2434
2435
2436
2437
2438
2439
2440
2441
2442
2443
2444
2445
2446
2447
2448
2449
2450
2451
2452
2453
2454
2455
2456
2457
2458
2459
2460
2461
2462
2463
2464
2465
2466
2467
2468
2469
2470
2471
2472
2473
2474
2475
2476
2477
2478
2479
2480
2481
2482
2483
2484
2485
2486
2487
2488
2489
2490
2491
2492
2493
2494
2495
2496
2497
2498
2499
2500
2501
2502
2503
2504
2505
2506
2507
2508
2509
2510
2511
2512
2513
2514
2515
2516
2517
2518
2519
2520
2521
2522
2523
2524
2525
2526
2527
2528
2529
2530
2531
2532
2533
2534
2535
2536
2537
2538
2539
2540
2541
2542
2543
2544
2545
2546
2547
2548
2549
2550
2551
2552
2553
2554
2555
2556
2557
2558
2559
2560
2561
2562
2563
2564
2565
2566
2567
2568
2569
2570
2571
2572
2573
2574
2575
2576
2577
2578
2579
2580
2581
2582
2583
2584
2585
2586
2587
2588
2589
2590
2591
2592
2593
2594
2595
2596
2597
2598
2599
2600
2601
2602
2603
2604
2605
2606
2607
2608
2609
2610
2611
2612
2613
2614
2615
2616
2617
2618
2619
2620
2621
2622
2623
2624
2625
2626
2627
2628
2629
2630
2631
2632
2633
2634
2635
2636
2637
2638
2639
2640
2641
2642
2643
2644
2645
2646
2647
2648
2649
2650
2651
2652
2653
2654
2655
2656
2657
2658
2659
2660
2661
2662
2663
2664
2665
2666
2667
2668
2669
2670
2671
2672
2673
2674
2675
2676
2677
2678
2679
2680
2681
2682
2683
2684
2685
2686
2687
2688
2689
2690
2691
2692
2693
2694
2695
2696
2697
2698
2699
2700
2701
2702
2703
2704
2705
2706
2707
2708
2709
2710
2711
2712
2713
2714
2715
2716
2717
2718
2719
2720
2721
2722
2723
2724
2725
2726
2727
2728
2729
2730
2731
2732
2733
2734
2735
2736
2737
2738
2739
2740
2741
2742
2743
2744
2745
2746
2747
2748
2749
2750
2751
2752
2753
2754
2755
2756
2757
2758
2759
2760
2761
2762
2763
2764
2765
2766
2767
2768
2769
2770
2771
2772
2773
2774
2775
2776
2777
2778
2779
2780
2781
2782
2783
2784
2785
2786
2787
2788
2789
2790
2791
2792
2793
2794
2795
2796
2797
2798
2799
2800
2801
2802
2803
2804
2805
2806
2807
2808
2809
2810
2811
2812
2813
2814
2815
2816
2817
2818
2819
2820
2821
2822
2823
2824
2825
2826
2827
2828
2829
2830
2831
2832
2833
2834
2835
2836
2837
2838
2839
2840
2841
2842
2843
2844
2845
2846
2847
2848
2849
2850
2851
2852
2853
2854
2855
2856
2857
2858
2859
2860
2861
2862
2863
2864
2865
2866
2867
2868
2869
2870
2871
2872
2873
2874
2875
2876
2877
2878
2879
2880
2881
2882
2883
2884
2885
2886
2887
2888
2889
2890
2891
2892
2893
2894
2895
2896
2897
2898
2899
2900
2901
2902
2903
2904
2905
2906
2907
2908
2909
2910
2911
2912
2913
2914
2915
2916
2917
2918
2919
2920
2921
2922
2923
2924
2925
2926
2927
2928
2929
2930
2931
2932
2933
2934
2935
2936
2937
2938
2939
2940
2941
2942
2943
2944
2945
2946
2947
2948
2949
2950
2951
2952
2953
2954
2955
2956
2957
2958
2959
2960
2961
2962
2963
2964
2965
2966
2967
2968
2969
2970
2971
2972
2973
2974
2975
2976
2977
2978
2979
2980
2981
2982
2983
2984
2985
2986
2987
2988
2989
2990
2991
2992
2993
2994
2995
2996
2997
2998
2999
3000
3001
3002
3003
3004
3005
3006
3007
3008
3009
3010
3011
3012
3013
3014
3015
3016
3017
3018
3019
3020
3021
3022
3023
3024
3025
3026
3027
3028
3029
3030
3031
3032
3033
3034
3035
3036
3037
3038
3039
3040
3041
3042
3043
3044
3045
3046
3047
3048
3049
3050
3051
3052
3053
3054
3055
3056
3057
3058
3059
3060
3061
3062
3063
3064
3065
3066
3067
3068
3069
3070
3071
3072
3073
3074
3075
3076
3077
3078
3079
3080
3081
3082
3083
3084
3085
3086
3087
3088
3089
3090
3091
3092
3093
3094
3095
3096
3097
3098
3099
3100
3101
3102
3103
3104
3105
3106
3107
3108
3109
3110
3111
3112
3113
3114
3115
3116
3117
3118
3119
3120
3121
3122
3123
3124
3125
3126
3127
3128
3129
3130
3131
3132
3133
3134
3135
3136
3137
3138
3139
3140
3141
3142
3143
3144
3145
3146
3147
3148
3149
3150
3151
3152
3153
3154
3155
3156
3157
3158
3159
3160
3161
3162
3163
3164
3165
3166
3167
3168
3169
3170
3171
3172
3173
3174
3175
3176
3177
3178
3179
3180
3181
3182
3183
3184
3185
3186
3187
3188
3189
3190
3191
3192
3193
3194
3195
3196
3197
3198
3199
3200
3201
3202
3203
3204
3205
3206
3207
3208
3209
3210
3211
3212
3213
3214
3215
3216
3217
3218
3219
3220
3221
3222
3223
3224
3225
3226
3227
3228
3229
3230
3231
3232
3233
3234
3235
3236
3237
3238
3239
3240
3241
3242
3243
3244
3245
3246
3247
3248
3249
3250
3251
3252
3253
3254
3255
3256
3257
3258
3259
3260
3261
3262
3263
3264
3265
3266
3267
3268
3269
3270
3271
3272
3273
3274
3275
3276
3277
3278
3279
3280
3281
3282
3283
3284
3285
3286
3287
3288
3289
3290
3291
3292
3293
3294
3295
3296
3297
3298
3299
3300
3301
3302
3303
3304
3305
3306
3307
3308
3309
3310
3311
3312
3313
3314
3315
3316
3317
3318
3319
3320
3321
3322
3323
3324
3325
3326
3327
3328
3329
3330
3331
3332
3333
3334
3335
3336
3337
3338
3339
3340
3341
3342
3343
3344
3345
3346
3347
3348
3349
3350
3351
3352
3353
3354
3355
3356
3357
3358
3359
3360
3361
3362
3363
3364
3365
3366
3367
3368
3369
3370
3371
3372
3373
3374
3375
3376
3377
3378
3379
3380
3381
3382
3383
3384
3385
3386
3387
3388
3389
3390
3391
3392
3393
3394
3395
3396
3397
3398
3399
3400
3401
3402
3403
3404
3405
3406
3407
3408
3409
3410
3411
3412
3413
3414
3415
3416
3417
3418
3419
3420
3421
3422
3423
3424
3425
3426
3427
3428
3429
3430
3431
3432
3433
3434
3435
3436
3437
3438
3439
3440
3441
3442
3443
3444
3445
3446
3447
3448
3449
3450
3451
3452
3453
3454
3455
3456
3457
3458
3459
3460
3461
3462
3463
3464
3465
3466
3467
3468
3469
3470
3471
3472
3473
3474
3475
3476
3477
3478
3479
3480
3481
3482
3483
3484
3485
3486
3487
3488
3489
3490
3491
3492
3493
3494
3495
3496
3497
3498
3499
3500
3501
3502
3503
3504
3505
3506
3507
3508
3509
3510
3511
3512
3513
3514
3515
3516
3517
3518
3519
3520
3521
3522
3523
3524
3525
3526
3527
3528
3529
3530
3531
3532
3533
3534
3535
3536
3537
3538
3539
3540
3541
3542
3543
3544
3545
3546
3547
3548
3549
3550
3551
3552
3553
3554
3555
3556
3557
3558
3559
3560
3561
3562
3563
3564
3565
3566
3567
3568
3569
3570
3571
3572
3573
3574
3575
3576
3577
3578
3579
3580
3581
3582
3583
3584
3585
3586
3587
3588
3589
3590
3591
3592
3593
3594
3595
3596
3597
3598
3599
3600
3601
3602
3603
3604
3605
3606
3607
3608
3609
3610
3611
3612
3613
3614
3615
3616
3617
3618
3619
3620
3621
3622
3623
3624
3625
3626
3627
3628
3629
3630
3631
3632
3633
3634
3635
3636
3637
3638
3639
3640
3641
3642
3643
3644
3645
3646
3647
3648
3649
3650
3651
3652
3653
3654
3655
3656
3657
3658
3659
3660
3661
3662
3663
3664
3665
3666
3667
3668
3669
3670
3671
3672
3673
3674
3675
3676
3677
3678
3679
3680
3681
3682
3683
3684
3685
3686
3687
3688
3689
3690
3691
3692
3693
3694
3695
3696
3697
3698
3699
3700
3701
3702
3703
3704
3705
3706
3707
3708
3709
3710
3711
3712
3713
3714
3715
3716
3717
3718
3719
3720
3721
3722
3723
3724
3725
3726
3727
3728
3729
3730
3731
3732
3733
3734
3735
3736
3737
3738
3739
3740
3741
3742
3743
3744
3745
3746
3747
3748
3749
3750
3751
3752
3753
3754
3755
3756
3757
3758
3759
3760
3761
3762
3763
3764
3765
3766
3767
3768
3769
3770
3771
3772
3773
3774
3775
3776
3777
3778
3779
3780
3781
3782
3783
3784
3785
3786
3787
3788
3789
3790
3791
3792
3793
3794
3795
3796
3797
3798
3799
3800
3801
3802
3803
3804
3805
3806
3807
3808
3809
3810
3811
3812
3813
3814
3815
3816
3817
3818
3819
3820
3821
3822
3823
3824
3825
3826
3827
3828
3829
3830
3831
3832
3833
3834
3835
3836
3837
3838
3839
3840
3841
3842
3843
3844
3845
3846
3847
3848
3849
3850
3851
3852
3853
3854
3855
3856
3857
3858
3859
3860
3861
3862
3863
3864
3865
3866
3867
3868
3869
3870
3871
3872
3873
3874
3875
3876
3877
3878
3879
3880
3881
3882
3883
3884
3885
3886
3887
3888
3889
3890
3891
3892
3893
3894
3895
3896
3897
3898
3899
3900
3901
3902
3903
3904
3905
3906
3907
3908
3909
3910
3911
3912
3913
3914
3915
3916
3917
3918
3919
3920
3921
3922
3923
3924
3925
3926
3927
3928
3929
3930
3931
3932
3933
3934
3935
3936
3937
3938
3939
3940
3941
3942
3943
3944
3945
3946
3947
3948
3949
3950
3951
3952
3953
3954
3955
3956
3957
3958
3959
3960
3961
3962
3963
3964
3965
3966
3967
3968
3969
3970
3971
3972
3973
3974
3975
3976
3977
3978
3979
3980
3981
3982
3983
3984
3985
3986
3987
3988
3989
3990
3991
3992
3993
3994
3995
3996
3997
3998
3999
4000
4001
4002
4003
4004
4005
4006
4007
4008
4009
4010
4011
4012
4013
4014
4015
4016
4017
4018
4019
4020
4021
4022
4023
4024
4025
4026
4027
4028
4029
4030
4031
4032
4033
4034
4035
4036
4037
4038
4039
4040
4041
4042
4043
4044
4045
4046
4047
4048
4049
4050
4051
4052
4053
4054
4055
4056
4057
4058
4059
4060
4061
4062
4063
4064
4065
4066
4067
4068
4069
4070
4071
4072
4073
4074
4075
4076
4077
4078
4079
4080
4081
4082
4083
4084
4085
4086
4087
4088
4089
4090
4091
4092
4093
4094
4095
4096
4097
4098
4099
4100
4101
4102
4103
4104
4105
4106
4107
4108
4109
4110
4111
4112
4113
4114
4115
4116
4117
4118
4119
4120
4121
4122
4123
4124
4125
4126
4127
4128
4129
4130
4131
4132
4133
4134
4135
4136
4137
4138
4139
4140
4141
4142
4143
4144
4145
4146
4147
4148
4149
4150
4151
4152
4153
4154
4155
4156
4157
4158
4159
4160
4161
4162
4163
4164
4165
4166
4167
4168
4169
4170
4171
4172
4173
4174
4175
4176
4177
4178
4179
4180
4181
4182
4183
4184
4185
4186
4187
4188
4189
4190
4191
4192
4193
4194
4195
4196
4197
4198
4199
4200
4201
4202
4203
4204
4205
4206
4207
4208
4209
4210
4211
4212
4213
4214
4215
4216
4217
4218
4219
4220
4221
4222
4223
4224
4225
4226
4227
4228
4229
4230
4231
4232
4233
4234
4235
4236
4237
4238
4239
4240
4241
4242
4243
4244
4245
4246
4247
4248
4249
4250
4251
4252
4253
4254
4255
4256
4257
4258
4259
4260
4261
4262
4263
4264
4265
4266
4267
4268
4269
4270
4271
4272
4273
4274
4275
4276
4277
4278
4279
4280
4281
4282
4283
4284
4285
4286
4287
4288
4289
4290
4291
4292
4293
4294
4295
4296
4297
4298
4299
4300
4301
4302
4303
4304
4305
4306
4307
4308
4309
4310
4311
4312
4313
4314
4315
4316
4317
4318
4319
4320
4321
4322
4323
4324
4325
4326
4327
4328
4329
4330
4331
4332
4333
4334
4335
4336
4337
4338
4339
4340
4341
4342
4343
4344
4345
4346
4347
4348
4349
4350
4351
4352
4353
4354
4355
4356
4357
4358
4359
4360
4361
4362
4363
4364
4365
4366
4367
4368
4369
4370
4371
4372
4373
4374
4375
4376
4377
4378
4379
4380
4381
4382
4383
4384
4385
4386
4387
4388
4389
4390
4391
4392
4393
4394
4395
4396
4397
4398
4399
4400
4401
4402
4403
4404
4405
4406
4407
4408
4409
4410
4411
4412
4413
4414
4415
4416
4417
4418
4419
4420
4421
4422
4423
4424
4425
4426
4427
4428
4429
4430
4431
4432
4433
4434
4435
4436
4437
4438
4439
4440
4441
4442
4443
4444
4445
4446
4447
4448
4449
4450
4451
4452
4453
4454
4455
4456
4457
4458
4459
4460
4461
4462
4463
4464
4465
4466
4467
4468
4469
4470
4471
4472
4473
4474
4475
4476
4477
4478
4479
4480
4481
4482
4483
4484
4485
4486
4487
4488
4489
4490
4491
4492
4493
4494
4495
4496
4497
4498
4499
4500
4501
4502
4503
4504
4505
4506
4507
4508
4509
4510
4511
4512
4513
4514
4515
4516
4517
4518
4519
4520
4521
4522
4523
4524
4525
4526
4527
4528
4529
4530
4531
4532
4533
4534
4535
4536
4537
4538
4539
4540
4541
4542
4543
4544
4545
4546
4547
4548
4549
4550
4551
4552
4553
4554
4555
4556
4557
4558
4559
4560
4561
4562
4563
4564
4565
4566
4567
4568
4569
4570
4571
4572
4573
4574
4575
4576
4577
4578
4579
4580
4581
4582
4583
4584
4585
4586
4587
4588
4589
4590
4591
4592
4593
4594
4595
4596
4597
4598
4599
4600
4601
4602
4603
4604
4605
4606
4607
4608
4609
4610
4611
4612
4613
4614
4615
4616
4617
4618
4619
4620
4621
4622
4623
4624
4625
4626
4627
4628
4629
4630
4631
4632
4633
4634
4635
4636
4637
4638
4639
4640
4641
4642
4643
4644
4645
4646
4647
4648
4649
4650
4651
4652
4653
4654
4655
4656
4657
4658
4659
4660
4661
4662
4663
4664
4665
4666
4667
4668
4669
4670
4671
4672
4673
4674
4675
4676
4677
4678
4679
4680
4681
4682
4683
4684
4685
4686
4687
4688
4689
4690
4691
4692
4693
4694
4695
4696
4697
4698
4699
4700
4701
4702
4703
4704
4705
4706
4707
4708
4709
4710
4711
4712
4713
4714
4715
4716
4717
4718
4719
4720
4721
4722
4723
4724
4725
4726
4727
4728
4729
4730
4731
4732
4733
4734
4735
4736
4737
4738
4739
4740
4741
4742
4743
4744
4745
4746
4747
4748
4749
4750
4751
4752
4753
4754
4755
4756
4757
4758
4759
4760
4761
4762
4763
4764
4765
4766
4767
4768
4769
4770
4771
4772
4773
4774
4775
4776
4777
4778
4779
4780
4781
4782
4783
4784
4785
4786
4787
4788
4789
4790
4791
4792
4793
4794
4795
4796
4797
4798
4799
4800
4801
4802
4803
4804
4805
4806
4807
4808
4809
4810
4811
4812
4813
4814
4815
4816
4817
4818
4819
4820
4821
4822
4823
4824
4825
4826
4827
4828
4829
4830
4831
4832
4833
4834
4835
4836
4837
4838
4839
4840
4841
4842
4843
4844
4845
4846
4847
4848
4849
4850
4851
4852
4853
4854
4855
4856
4857
4858
4859
4860
4861
4862
4863
4864
4865
4866
4867
4868
4869
4870
4871
4872
4873
4874
4875
4876
4877
4878
4879
4880
4881
4882
4883
4884
4885
4886
4887
4888
4889
4890
4891
4892
4893
4894
4895
4896
4897
4898
4899
4900
4901
4902
4903
4904
4905
4906
4907
4908
4909
4910
4911
4912
4913
4914
4915
4916
4917
4918
4919
4920
4921
4922
4923
4924
4925
4926
4927
4928
4929
4930
4931
4932
4933
4934
4935
4936
4937
4938
4939
4940
4941
4942
4943
4944
4945
4946
4947
4948
4949
4950
4951
4952
4953
4954
4955
4956
4957
4958
4959
4960
4961
4962
4963
4964
4965
4966
4967
4968
4969
4970
4971
4972
4973
4974
4975
4976
4977
4978
4979
4980
4981
4982
4983
4984
4985
4986
4987
4988
4989
4990
4991
4992
4993
4994
4995
4996
4997
4998
4999
5000
5001
5002
5003
5004
5005
5006
5007
5008
5009
5010
5011
5012
5013
5014
5015
5016
5017
5018
5019
5020
5021
5022
5023
5024
5025
5026
5027
5028
5029
5030
5031
5032
5033
5034
5035
5036
5037
5038
5039
5040
5041
5042
5043
5044
5045
5046
5047
5048
5049
5050
5051
5052
5053
5054
5055
5056
5057
5058
5059
5060
5061
5062
5063
5064
5065
5066
5067
5068
5069
5070
5071
5072
5073
5074
5075
5076
5077
5078
5079
5080
5081
5082
5083
5084
5085
5086
5087
5088
5089
5090
5091
5092
5093
5094
5095
5096
5097
5098
5099
5100
5101
5102
5103
5104
5105
5106
5107
5108
5109
5110
5111
5112
5113
5114
5115
5116
5117
5118
5119
5120
5121
5122
5123
5124
5125
5126
5127
5128
5129
5130
5131
5132
5133
5134
5135
5136
5137
5138
5139
5140
5141
5142
5143
5144
5145
5146
5147
5148
5149
5150
5151
5152
5153
5154
5155
5156
5157
5158
5159
5160
5161
5162
5163
5164
5165
5166
5167
5168
5169
5170
5171
5172
5173
5174
5175
5176
5177
5178
5179
5180
5181
5182
5183
5184
5185
5186
5187
5188
5189
5190
5191
5192
5193
5194
5195
5196
5197
5198
5199
5200
5201
5202
5203
5204
5205
5206
5207
5208
5209
5210
5211
5212
5213
5214
5215
5216
5217
5218
5219
5220
5221
5222
5223
5224
5225
5226
5227
5228
5229
5230
5231
5232
5233
5234
5235
5236
5237
5238
5239
5240
5241
5242
5243
5244
5245
5246
5247
5248
5249
5250
5251
5252
5253
5254
5255
5256
5257
5258
5259
5260
5261
5262
5263
5264
5265
5266
5267
5268
5269
5270
5271
5272
5273
5274
5275
5276
5277
5278
5279
5280
5281
5282
5283
5284
5285
5286
5287
5288
5289
5290
5291
5292
5293
5294
5295
5296
5297
5298
5299
5300
5301
5302
5303
5304
5305
5306
5307
5308
5309
5310
5311
5312
5313
5314
5315
5316
5317
5318
5319
5320
5321
5322
5323
5324
5325
5326
5327
5328
5329
5330
5331
5332
5333
5334
5335
5336
5337
5338
5339
5340
5341
5342
5343
5344
5345
5346
5347
5348
5349
5350
5351
5352
5353
5354
5355
5356
5357
5358
5359
5360
5361
5362
5363
5364
5365
5366
5367
5368
5369
5370
5371
5372
5373
5374
5375
5376
5377
5378
5379
5380
5381
5382
5383
5384
5385
5386
5387
5388
5389
5390
5391
5392
5393
5394
5395
5396
5397
5398
5399
5400
5401
5402
5403
5404
5405
5406
5407
5408
5409
5410
5411
5412
5413
5414
5415
5416
5417
5418
5419
5420
5421
5422
5423
5424
5425
5426
5427
5428
5429
5430
5431
5432
5433
5434
5435
5436
5437
5438
5439
5440
5441
5442
5443
5444
5445
5446
5447
5448
5449
5450
5451
5452
5453
5454
5455
5456
5457
5458
5459
5460
5461
5462
5463
5464
5465
5466
5467
5468
5469
5470
5471
5472
5473
5474
5475
5476
5477
5478
5479
5480
5481
5482
5483
5484
5485
5486
5487
5488
5489
5490
5491
5492
5493
5494
5495
5496
5497
5498
5499
5500
5501
5502
5503
5504
5505
5506
5507
5508
5509
5510
5511
5512
5513
5514
5515
5516
5517
5518
5519
5520
5521
5522
5523
5524
5525
5526
5527
5528
5529
5530
5531
5532
5533
5534
5535
5536
5537
5538
5539
5540
5541
5542
5543
5544
5545
5546
5547
5548
5549
5550
5551
5552
5553
5554
5555
5556
5557
5558
5559
5560
5561
5562
5563
5564
5565
5566
5567
5568
5569
5570
5571
5572
5573
5574
5575
5576
5577
5578
5579
5580
5581
5582
5583
5584
5585
5586
5587
5588
5589
5590
5591
5592
5593
5594
5595
5596
5597
5598
5599
5600
5601
5602
5603
5604
5605
5606
5607
5608
5609
5610
5611
5612
5613
5614
5615
5616
5617
5618
5619
5620
5621
5622
5623
5624
5625
5626
5627
5628
5629
5630
5631
5632
5633
5634
5635
5636
5637
5638
5639
5640
5641
5642
5643
5644
5645
5646
5647
5648
5649
5650
5651
5652
5653
5654
5655
5656
5657
5658
5659
5660
5661
5662
5663
5664
5665
5666
5667
5668
5669
5670
5671
5672
5673
5674
5675
5676
5677
5678
5679
5680
5681
5682
5683
5684
5685
5686
5687
5688
5689
5690
5691
5692
5693
5694
5695
5696
5697
5698
5699
5700
5701
5702
5703
5704
5705
5706
5707
5708
5709
5710
5711
5712
5713
5714
5715
5716
5717
5718
5719
5720
5721
5722
5723
5724
5725
5726
5727
5728
5729
5730
5731
5732
5733
5734
5735
5736
5737
5738
5739
5740
5741
5742
5743
5744
5745
5746
5747
5748
5749
5750
5751
5752
5753
5754
5755
5756
5757
5758
5759
5760
5761
5762
5763
5764
5765
5766
5767
5768
5769
5770
5771
5772
5773
5774
5775
5776
5777
5778
5779
5780
5781
5782
5783
5784
5785
5786
5787
5788
5789
5790
5791
5792
5793
5794
5795
5796
5797
5798
5799
5800
5801
5802
5803
5804
5805
5806
5807
5808
5809
5810
5811
5812
5813
5814
5815
5816
5817
5818
5819
5820
5821
5822
5823
5824
5825
5826
5827
5828
5829
5830
5831
5832
5833
5834
5835
5836
5837
5838
5839
5840
5841
5842
5843
5844
5845
5846
5847
5848
5849
5850
5851
5852
5853
5854
5855
5856
5857
5858
5859
5860
5861
5862
5863
5864
5865
5866
5867
5868
5869
5870
5871
5872
5873
5874
5875
5876
5877
5878
5879
5880
5881
5882
5883
5884
5885
5886
5887
5888
5889
5890
5891
5892
5893
5894
5895
5896
5897
5898
5899
5900
5901
5902
5903
5904
5905
5906
5907
5908
5909
5910
5911
5912
5913
5914
5915
5916
5917
5918
5919
5920
5921
5922
5923
5924
5925
5926
5927
5928
5929
5930
5931
5932
5933
5934
5935
5936
5937
5938
5939
5940
5941
5942
5943
5944
5945
5946
5947
5948
5949
5950
5951
5952
5953
5954
5955
5956
5957
5958
5959
5960
5961
5962
5963
5964
5965
5966
5967
5968
5969
5970
5971
5972
5973
5974
5975
5976
5977
5978
5979
5980
5981
5982
5983
5984
5985
5986
5987
5988
5989
5990
5991
5992
5993
5994
5995
5996
5997
5998
5999
6000
6001
6002
6003
6004
6005
6006
6007
6008
6009
6010
6011
6012
6013
6014
6015
6016
6017
6018
6019
6020
6021
6022
6023
6024
6025
6026
6027
6028
6029
6030
6031
6032
6033
6034
6035
6036
6037
6038
6039
6040
6041
6042
6043
6044
6045
6046
6047
6048
6049
6050
6051
6052
6053
6054
6055
6056
6057
6058
6059
6060
6061
6062
6063
6064
6065
6066
6067
6068
6069
6070
6071
6072
6073
6074
6075
6076
6077
6078
6079
6080
6081
6082
6083
6084
6085
6086
6087
6088
6089
6090
6091
6092
6093
6094
6095
6096
6097
6098
6099
6100
6101
6102
6103
6104
6105
6106
6107
6108
6109
6110
6111
6112
6113
6114
6115
6116
6117
6118
6119
6120
6121
6122
6123
6124
6125
6126
6127
6128
6129
6130
6131
6132
6133
6134
6135
6136
6137
6138
6139
6140
6141
6142
6143
6144
6145
6146
6147
6148
6149
6150
6151
6152
6153
6154
6155
6156
6157
6158
6159
6160
6161
6162
6163
6164
6165
6166
6167
6168
6169
6170
6171
6172
6173
6174
6175
6176
6177
6178
6179
6180
6181
6182
6183
6184
6185
6186
6187
6188
6189
6190
6191
6192
6193
6194
6195
6196
6197
6198
6199
6200
6201
6202
6203
6204
6205
6206
6207
6208
6209
6210
6211
6212
6213
6214
6215
6216
6217
6218
6219
6220
6221
6222
6223
6224
6225
6226
6227
6228
6229
6230
6231
6232
6233
6234
6235
6236
6237
6238
6239
6240
6241
6242
6243
6244
6245
6246
6247
6248
6249
6250
6251
6252
6253
6254
6255
6256
6257
6258
6259
6260
6261
6262
6263
6264
6265
6266
6267
6268
6269
6270
6271
6272
6273
6274
6275
6276
6277
6278
6279
6280
6281
6282
6283
6284
6285
6286
6287
6288
6289
6290
6291
6292
6293
6294
6295
6296
6297
6298
6299
6300
6301
6302
6303
6304
6305
6306
6307
6308
6309
6310
6311
6312
6313
6314
6315
6316
6317
6318
6319
6320
6321
6322
6323
6324
6325
6326
6327
6328
6329
6330
6331
6332
6333
6334
6335
6336
6337
6338
6339
6340
6341
6342
6343
6344
6345
6346
6347
6348
6349
6350
6351
6352
6353
6354
6355
6356
6357
6358
6359
6360
6361
6362
6363
6364
6365
6366
6367
6368
6369
6370
6371
6372
6373
6374
6375
6376
6377
6378
6379
6380
6381
6382
6383
6384
6385
6386
6387
6388
6389
6390
6391
6392
6393
6394
6395
6396
6397
6398
6399
6400
6401
6402
6403
6404
6405
6406
6407
6408
6409
6410
6411
6412
6413
6414
6415
6416
6417
6418
6419
6420
6421
6422
6423
6424
6425
6426
6427
6428
6429
6430
6431
6432
6433
6434
6435
6436
6437
6438
6439
6440
6441
6442
6443
6444
6445
6446
6447
6448
6449
6450
6451
6452
6453
6454
6455
6456
6457
6458
6459
6460
6461
6462
6463
6464
6465
6466
6467
6468
6469
6470
6471
6472
6473
6474
6475
6476
6477
6478
6479
6480
6481
6482
6483
6484
6485
6486
6487
6488
6489
6490
6491
6492
6493
6494
6495
6496
6497
6498
6499
6500
6501
6502
6503
6504
6505
6506
6507
6508
6509
6510
6511
6512
6513
6514
6515
6516
6517
6518
6519
6520
6521
6522
6523
6524
6525
6526
6527
6528
6529
6530
6531
6532
6533
6534
6535
6536
6537
6538
6539
6540
6541
6542
6543
6544
6545
6546
6547
6548
6549
6550
6551
6552
6553
6554
6555
6556
6557
6558
6559
6560
6561
6562
6563
6564
6565
6566
6567
6568
6569
6570
6571
6572
6573
6574
6575
6576
6577
6578
6579
6580
6581
6582
6583
6584
6585
6586
6587
6588
6589
6590
6591
6592
6593
6594
6595
6596
6597
6598
6599
6600
6601
6602
6603
6604
6605
6606
6607
6608
6609
6610
6611
6612
6613
6614
6615
6616
6617
6618
6619
6620
6621
6622
6623
6624
6625
6626
6627
6628
6629
6630
6631
6632
6633
6634
6635
6636
6637
6638
6639
6640
6641
6642
6643
6644
6645
6646
6647
6648
6649
6650
6651
6652
6653
6654
6655
6656
6657
6658
6659
6660
6661
6662
6663
6664
6665
6666
6667
6668
6669
6670
6671
6672
6673
6674
6675
6676
6677
6678
6679
6680
6681
6682
6683
6684
6685
6686
6687
6688
6689
6690
6691
6692
6693
6694
6695
6696
6697
6698
6699
6700
6701
6702
6703
6704
6705
6706
6707
6708
6709
6710
6711
6712
6713
6714
6715
6716
6717
6718
6719
6720
6721
6722
6723
6724
6725
6726
6727
6728
6729
6730
6731
6732
6733
6734
6735
6736
6737
6738
6739
6740
6741
6742
6743
6744
6745
6746
6747
6748
6749
6750
6751
6752
6753
6754
6755
6756
6757
6758
6759
6760
6761
6762
6763
6764
6765
6766
6767
6768
6769
6770
6771
6772
6773
6774
6775
6776
6777
6778
6779
6780
6781
6782
6783
6784
6785
6786
6787
6788
6789
6790
6791
6792
6793
6794
6795
6796
6797
6798
6799
6800
6801
6802
6803
6804
6805
6806
6807
6808
6809
6810
6811
6812
6813
6814
6815
6816
6817
6818
6819
6820
6821
6822
6823
6824
6825
6826
6827
6828
6829
6830
6831
6832
6833
6834
6835
6836
6837
6838
6839
6840
6841
6842
6843
6844
6845
6846
6847
6848
6849
6850
6851
6852
6853
6854
6855
6856
6857
6858
6859
6860
6861
6862
6863
6864
6865
6866
6867
6868
6869
6870
6871
6872
6873
6874
6875
6876
6877
6878
6879
6880
6881
6882
6883
6884
6885
6886
6887
6888
6889
6890
6891
6892
6893
6894
6895
6896
6897
6898
6899
6900
6901
6902
6903
6904
6905
6906
6907
6908
6909
6910
6911
6912
6913
6914
6915
6916
6917
6918
6919
6920
6921
6922
6923
6924
6925
6926
6927
6928
6929
6930
6931
6932
6933
6934
6935
6936
6937
6938
6939
6940
6941
6942
6943
6944
6945
6946
6947
6948
6949
6950
6951
6952
6953
6954
6955
6956
6957
6958
6959
6960
6961
6962
6963
6964
6965
6966
6967
6968
6969
6970
6971
6972
6973
6974
6975
6976
6977
6978
6979
6980
6981
6982
6983
6984
6985
6986
6987
6988
6989
6990
6991
6992
6993
6994
6995
6996
6997
6998
6999
7000
7001
7002
7003
7004
7005
7006
7007
7008
7009
7010
7011
7012
7013
7014
7015
7016
7017
7018
7019
7020
7021
7022
7023
7024
7025
7026
7027
7028
7029
7030
7031
7032
7033
7034
7035
7036
7037
7038
7039
7040
7041
7042
7043
7044
7045
7046
7047
7048
7049
7050
7051
7052
7053
7054
7055
7056
7057
7058
7059
7060
7061
7062
7063
7064
7065
7066
7067
7068
7069
7070
7071
7072
7073
7074
7075
7076
7077
7078
7079
7080
7081
7082
7083
7084
7085
7086
7087
7088
7089
7090
7091
7092
7093
7094
7095
7096
7097
7098
7099
7100
7101
7102
7103
7104
7105
7106
7107
7108
7109
7110
7111
7112
7113
7114
7115
7116
7117
7118
7119
7120
7121
7122
7123
7124
7125
7126
7127
7128
7129
7130
7131
7132
7133
7134
7135
7136
7137
7138
7139
7140
7141
7142
7143
7144
7145
7146
7147
7148
7149
7150
7151
7152
7153
7154
7155
7156
7157
7158
7159
7160
7161
7162
7163
7164
7165
7166
7167
7168
7169
7170
7171
7172
7173
7174
7175
7176
7177
7178
7179
7180
7181
7182
7183
7184
7185
7186
7187
7188
7189
7190
7191
7192
7193
7194
7195
7196
7197
7198
7199
7200
7201
7202
7203
7204
7205
7206
7207
7208
7209
7210
7211
7212
7213
7214
7215
7216
7217
7218
7219
7220
7221
7222
7223
7224
7225
7226
7227
7228
7229
7230
7231
7232
7233
7234
7235
7236
7237
7238
7239
7240
7241
7242
7243
7244
7245
7246
7247
7248
7249
7250
7251
7252
7253
7254
7255
7256
7257
7258
7259
7260
7261
7262
7263
7264
7265
7266
7267
7268
7269
7270
7271
7272
7273
7274
7275
7276
7277
7278
7279
7280
7281
7282
7283
7284
7285
7286
7287
7288
7289
7290
7291
7292
7293
7294
7295
7296
7297
7298
7299
7300
7301
7302
7303
7304
7305
7306
7307
7308
7309
7310
7311
7312
7313
7314
7315
7316
7317
7318
7319
7320
7321
7322
7323
7324
7325
7326
7327
7328
7329
7330
7331
7332
7333
7334
7335
7336
7337
7338
7339
7340
7341
7342
7343
7344
7345
7346
7347
7348
7349
7350
7351
7352
7353
7354
7355
7356
7357
7358
7359
7360
7361
7362
7363
7364
7365
7366
7367
7368
7369
7370
7371
7372
7373
7374
7375
7376
7377
7378
7379
7380
7381
7382
7383
7384
7385
7386
7387
7388
7389
7390
7391
7392
7393
7394
7395
7396
7397
7398
7399
7400
7401
7402
7403
7404
7405
7406
7407
7408
7409
7410
7411
7412
7413
7414
7415
7416
7417
7418
7419
7420
7421
7422
7423
7424
7425
7426
7427
7428
7429
7430
7431
7432
7433
7434
7435
7436
7437
7438
7439
7440
7441
7442
7443
7444
7445
7446
7447
7448
7449
7450
7451
7452
7453
7454
7455
7456
7457
7458
7459
7460
7461
7462
7463
7464
7465
7466
7467
7468
7469
7470
7471
7472
7473
7474
7475
7476
7477
7478
7479
7480
7481
7482
7483
7484
7485
7486
7487
7488
7489
7490
7491
7492
7493
7494
7495
7496
7497
7498
7499
7500
7501
7502
7503
7504
7505
7506
7507
7508
7509
7510
7511
7512
7513
7514
7515
7516
7517
7518
7519
7520
7521
7522
7523
7524
7525
7526
7527
7528
7529
7530
7531
7532
7533
7534
7535
7536
7537
7538
7539
7540
7541
7542
7543
7544
7545
7546
7547
7548
7549
7550
7551
7552
7553
7554
7555
7556
7557
7558
7559
7560
7561
7562
7563
7564
7565
7566
7567
7568
7569
7570
7571
7572
7573
7574
7575
7576
7577
7578
7579
7580
7581
7582
7583
7584
7585
7586
7587
7588
7589
7590
7591
7592
7593
7594
7595
7596
7597
7598
7599
7600
7601
7602
7603
7604
7605
7606
7607
7608
7609
7610
7611
7612
7613
7614
7615
7616
7617
7618
7619
7620
7621
7622
7623
7624
7625
7626
7627
7628
7629
7630
7631
7632
7633
7634
7635
7636
7637
7638
7639
7640
7641
7642
7643
7644
7645
7646
7647
7648
7649
7650
7651
7652
7653
7654
7655
7656
7657
7658
7659
7660
7661
7662
7663
7664
7665
7666
7667
7668
7669
7670
7671
7672
7673
7674
7675
7676
7677
7678
7679
7680
7681
7682
7683
7684
7685
7686
7687
7688
7689
7690
7691
7692
7693
7694
7695
7696
7697
7698
7699
7700
7701
7702
7703
7704
7705
7706
7707
7708
7709
7710
7711
7712
7713
7714
7715
7716
7717
7718
7719
7720
7721
7722
7723
7724
7725
7726
7727
7728
7729
7730
7731
7732
7733
7734
7735
7736
7737
7738
7739
7740
7741
7742
7743
7744
7745
7746
7747
7748
7749
7750
7751
7752
7753
7754
7755
7756
7757
7758
7759
7760
7761
7762
7763
7764
7765
7766
7767
7768
7769
7770
7771
7772
7773
7774
7775
7776
7777
7778
7779
7780
7781
7782
7783
7784
7785
7786
7787
7788
7789
7790
7791
7792
7793
7794
7795
7796
7797
7798
7799
7800
7801
7802
7803
7804
7805
7806
7807
7808
7809
7810
7811
7812
7813
7814
7815
7816
7817
7818
7819
7820
7821
7822
7823
7824
7825
7826
7827
7828
7829
7830
7831
7832
7833
7834
7835
7836
7837
7838
7839
7840
7841
7842
7843
7844
7845
7846
7847
7848
7849
7850
7851
7852
7853
7854
7855
7856
7857
7858
7859
7860
7861
7862
7863
7864
7865
7866
7867
7868
7869
7870
7871
7872
7873
7874
7875
7876
7877
7878
7879
7880
7881
7882
7883
7884
7885
7886
7887
7888
7889
7890
7891
7892
7893
7894
7895
7896
7897
7898
7899
7900
7901
7902
7903
7904
7905
7906
7907
7908
7909
7910
7911
7912
7913
7914
7915
7916
7917
7918
7919
7920
7921
7922
7923
7924
7925
7926
7927
7928
7929
7930
7931
7932
7933
7934
7935
7936
7937
7938
7939
7940
7941
7942
7943
7944
7945
7946
7947
7948
7949
7950
7951
7952
7953
7954
7955
7956
7957
7958
7959
7960
7961
7962
7963
7964
7965
7966
7967
7968
7969
7970
7971
7972
7973
7974
7975
7976
7977
7978
7979
7980
7981
7982
7983
7984
7985
7986
7987
7988
7989
7990
7991
7992
7993
7994
7995
7996
7997
7998
7999
8000
8001
8002
8003
8004
8005
8006
8007
8008
8009
8010
8011
8012
8013
8014
8015
8016
8017
8018
8019
8020
8021
8022
8023
8024
8025
8026
8027
8028
8029
8030
8031
8032
8033
8034
8035
8036
8037
8038
8039
8040
8041
8042
8043
8044
8045
8046
8047
8048
8049
8050
8051
8052
8053
8054
8055
8056
8057
8058
8059
8060
8061
8062
8063
8064
8065
8066
8067
8068
8069
8070
8071
8072
8073
8074
8075
8076
8077
8078
8079
8080
8081
8082
8083
8084
8085
8086
8087
8088
8089
8090
8091
8092
8093
8094
8095
8096
8097
8098
8099
8100
8101
8102
8103
8104
8105
8106
8107
8108
8109
8110
8111
8112
8113
8114
8115
8116
8117
8118
8119
8120
8121
8122
8123
8124
8125
8126
8127
8128
8129
8130
8131
8132
8133
8134
8135
8136
8137
8138
8139
8140
8141
8142
8143
8144
8145
8146
8147
8148
8149
8150
8151
8152
8153
8154
8155
8156
8157
8158
8159
8160
8161
8162
8163
8164
8165
8166
8167
8168
8169
8170
8171
8172
8173
8174
8175
8176
8177
8178
8179
8180
8181
8182
8183
8184
8185
8186
8187
8188
8189
8190
8191
8192
8193
8194
8195
8196
8197
8198
8199
8200
8201
8202
8203
8204
8205
8206
8207
8208
8209
8210
8211
8212
8213
8214
8215
8216
8217
8218
8219
8220
8221
8222
8223
8224
8225
8226
8227
8228
8229
8230
8231
8232
8233
8234
8235
8236
8237
8238
8239
8240
8241
8242
8243
8244
8245
8246
8247
8248
8249
8250
8251
8252
8253
8254
8255
8256
8257
8258
8259
8260
8261
8262
8263
8264
8265
8266
8267
8268
8269
8270
8271
8272
8273
8274
8275
8276
8277
8278
8279
8280
8281
8282
8283
8284
8285
8286
8287
8288
8289
8290
8291
8292
8293
8294
8295
8296
8297
8298
8299
8300
8301
8302
8303
8304
8305
8306
8307
8308
8309
8310
8311
8312
8313
8314
8315
8316
8317
8318
8319
8320
8321
8322
8323
8324
8325
8326
8327
8328
8329
8330
8331
8332
8333
8334
8335
8336
8337
8338
8339
8340
8341
8342
8343
8344
8345
8346
8347
8348
8349
8350
8351
8352
8353
8354
8355
8356
8357
8358
8359
8360
8361
8362
8363
8364
8365
8366
8367
8368
8369
8370
8371
8372
8373
8374
8375
8376
8377
8378
8379
8380
8381
8382
8383
8384
8385
8386
8387
8388
8389
8390
8391
8392
8393
8394
8395
8396
8397
8398
8399
8400
8401
8402
8403
8404
8405
8406
8407
8408
8409
8410
8411
8412
8413
8414
8415
8416
8417
8418
8419
8420
8421
8422
8423
8424
8425
8426
8427
8428
8429
8430
8431
8432
8433
8434
8435
8436
8437
8438
8439
8440
8441
8442
8443
8444
8445
8446
8447
8448
8449
8450
8451
8452
8453
8454
8455
8456
8457
8458
8459
8460
8461
8462
8463
8464
8465
8466
8467
8468
8469
8470
8471
8472
8473
8474
8475
8476
8477
8478
8479
8480
8481
8482
8483
8484
8485
8486
8487
8488
8489
8490
8491
8492
8493
8494
8495
8496
8497
8498
8499
8500
8501
8502
8503
8504
8505
8506
8507
8508
8509
8510
8511
8512
8513
8514
8515
8516
8517
8518
8519
8520
8521
8522
8523
8524
8525
8526
8527
8528
8529
8530
8531
8532
8533
8534
8535
8536
8537
8538
8539
8540
8541
8542
8543
8544
8545
8546
8547
8548
8549
8550
8551
8552
8553
8554
8555
8556
8557
8558
8559
8560
8561
8562
8563
8564
8565
8566
8567
8568
8569
8570
8571
8572
8573
8574
8575
8576
8577
8578
8579
8580
8581
8582
8583
8584
8585
8586
8587
8588
8589
8590
8591
8592
8593
8594
8595
8596
8597
8598
8599
8600
8601
8602
8603
8604
8605
8606
8607
8608
8609
8610
8611
8612
8613
8614
8615
8616
8617
8618
8619
8620
8621
8622
8623
8624
8625
8626
8627
8628
8629
8630
8631
8632
8633
8634
8635
8636
8637
8638
8639
8640
8641
8642
8643
8644
8645
8646
8647
8648
8649
8650
8651
8652
8653
8654
8655
8656
8657
8658
8659
8660
8661
8662
8663
8664
8665
8666
8667
8668
8669
8670
8671
8672
8673
8674
8675
8676
8677
8678
8679
8680
8681
8682
8683
8684
8685
8686
8687
8688
8689
8690
8691
8692
8693
8694
8695
8696
8697
8698
8699
8700
8701
8702
8703
8704
8705
8706
8707
8708
8709
8710
8711
8712
8713
8714
8715
8716
8717
8718
8719
8720
8721
8722
8723
8724
8725
8726
8727
8728
8729
8730
8731
8732
8733
8734
8735
8736
8737
8738
8739
8740
8741
8742
8743
8744
8745
8746
8747
8748
8749
8750
8751
8752
8753
8754
8755
8756
8757
8758
8759
8760
8761
8762
8763
8764
8765
8766
8767
8768
8769
8770
8771
8772
8773
8774
8775
8776
8777
8778
8779
8780
8781
8782
8783
8784
8785
8786
8787
8788
8789
8790
8791
8792
8793
8794
8795
8796
8797
8798
8799
8800
8801
8802
8803
8804
8805
8806
8807
8808
8809
8810
8811
8812
8813
8814
8815
8816
8817
8818
8819
8820
8821
8822
8823
8824
8825
8826
8827
8828
8829
8830
8831
8832
8833
8834
8835
8836
8837
8838
8839
8840
8841
8842
8843
8844
8845
8846
8847
8848
8849
8850
8851
8852
8853
8854
8855
8856
8857
8858
8859
8860
8861
8862
8863
8864
8865
8866
8867
8868
8869
8870
8871
8872
8873
8874
8875
8876
8877
8878
8879
8880
8881
8882
8883
8884
8885
8886
8887
8888
8889
8890
8891
8892
8893
8894
8895
8896
8897
8898
8899
8900
8901
8902
8903
8904
8905
8906
8907
8908
8909
8910
8911
8912
8913
8914
8915
8916
8917
8918
8919
8920
8921
8922
8923
8924
8925
8926
8927
8928
8929
8930
8931
8932
8933
8934
8935
8936
8937
8938
8939
8940
8941
8942
8943
8944
8945
8946
8947
8948
8949
8950
8951
8952
8953
8954
8955
8956
8957
8958
8959
8960
8961
8962
8963
8964
8965
8966
8967
8968
8969
8970
8971
8972
8973
8974
8975
8976
8977
8978
8979
8980
8981
8982
8983
8984
8985
8986
8987
8988
8989
8990
8991
8992
8993
8994
8995
8996
8997
8998
8999
9000
9001
9002
9003
9004
9005
9006
9007
9008
9009
9010
9011
9012
9013
9014
9015
9016
9017
9018
9019
9020
9021
9022
9023
9024
9025
9026
9027
9028
9029
9030
9031
9032
9033
9034
9035
9036
9037
9038
9039
9040
9041
9042
9043
9044
9045
9046
9047
9048
9049
9050
9051
9052
9053
9054
9055
9056
9057
9058
9059
9060
9061
9062
9063
9064
9065
9066
9067
9068
9069
9070
9071
9072
9073
9074
9075
9076
9077
9078
9079
9080
9081
9082
9083
9084
9085
9086
9087
9088
9089
9090
9091
9092
9093
9094
9095
9096
9097
9098
9099
9100
9101
9102
9103
9104
9105
9106
9107
9108
9109
9110
9111
9112
9113
9114
9115
9116
9117
9118
9119
9120
9121
9122
9123
9124
9125
9126
9127
9128
9129
9130
9131
9132
9133
9134
9135
9136
9137
9138
9139
9140
9141
9142
9143
9144
9145
9146
9147
9148
9149
9150
9151
9152
9153
9154
9155
9156
9157
9158
9159
9160
9161
9162
9163
9164
9165
9166
9167
9168
9169
9170
9171
9172
9173
9174
9175
9176
9177
9178
9179
9180
9181
9182
9183
9184
9185
9186
9187
9188
9189
9190
9191
9192
9193
9194
9195
9196
9197
9198
9199
9200
9201
9202
9203
9204
9205
9206
9207
9208
9209
9210
9211
9212
9213
9214
9215
9216
9217
9218
9219
9220
9221
9222
9223
9224
9225
9226
9227
9228
9229
9230
9231
9232
9233
9234
9235
9236
9237
9238
9239
9240
9241
9242
9243
9244
9245
9246
9247
9248
9249
9250
9251
9252
9253
9254
9255
9256
9257
9258
9259
9260
9261
9262
9263
9264
9265
9266
9267
9268
9269
9270
9271
9272
9273
9274
9275
9276
9277
9278
9279
9280
9281
9282
9283
9284
9285
9286
9287
9288
9289
9290
9291
9292
9293
9294
9295
9296
9297
9298
9299
9300
9301
9302
9303
9304
9305
9306
9307
9308
9309
9310
9311
9312
9313
9314
9315
9316
9317
9318
9319
9320
9321
9322
9323
9324
9325
9326
9327
9328
9329
9330
9331
9332
9333
9334
9335
9336
9337
9338
9339
9340
9341
9342
9343
9344
9345
9346
9347
9348
9349
9350
9351
9352
9353
9354
9355
9356
9357
9358
9359
9360
9361
9362
9363
9364
9365
9366
9367
9368
9369
9370
9371
9372
9373
9374
9375
9376
9377
9378
9379
9380
9381
9382
9383
9384
9385
9386
9387
9388
9389
9390
9391
9392
9393
9394
9395
9396
9397
9398
9399
9400
9401
9402
9403
9404
9405
9406
9407
9408
9409
9410
9411
9412
9413
9414
9415
9416
9417
9418
9419
9420
9421
9422
9423
9424
9425
9426
9427
9428
9429
9430
9431
9432
9433
9434
9435
9436
9437
9438
9439
9440
9441
9442
9443
9444
9445
9446
9447
9448
9449
9450
9451
9452
9453
9454
9455
9456
9457
9458
9459
9460
9461
9462
9463
9464
9465
9466
9467
9468
9469
9470
9471
9472
9473
9474
9475
9476
9477
9478
9479
9480
9481
9482
9483
9484
9485
9486
9487
9488
9489
9490
9491
9492
9493
9494
9495
9496
9497
9498
9499
9500
9501
9502
9503
9504
9505
9506
9507
9508
9509
9510
9511
9512
9513
9514
9515
9516
9517
9518
9519
9520
9521
9522
9523
9524
9525
9526
9527
9528
9529
9530
9531
9532
9533
9534
9535
9536
9537
9538
9539
9540
9541
9542
9543
9544
9545
9546
9547
9548
9549
9550
9551
9552
9553
9554
9555
9556
9557
9558
9559
9560
9561
9562
9563
9564
9565
9566
9567
9568
9569
9570
9571
9572
9573
9574
9575
9576
9577
9578
9579
9580
9581
9582
9583
9584
9585
9586
9587
9588
9589
9590
9591
9592
9593
9594
9595
9596
9597
9598
9599
9600
9601
9602
9603
9604
9605
9606
9607
9608
9609
9610
9611
9612
9613
9614
9615
9616
9617
9618
9619
9620
9621
9622
9623
9624
9625
9626
9627
9628
9629
9630
9631
9632
9633
9634
9635
9636
9637
9638
9639
9640
9641
9642
9643
9644
9645
9646
9647
9648
9649
9650
9651
9652
9653
9654
9655
9656
9657
9658
9659
9660
9661
9662
9663
9664
9665
9666
9667
9668
9669
9670
9671
9672
9673
9674
9675
9676
9677
9678
9679
9680
9681
9682
9683
9684
9685
9686
9687
9688
9689
9690
9691
9692
9693
9694
9695
9696
9697
9698
9699
9700
9701
9702
9703
9704
9705
9706
9707
9708
9709
9710
9711
9712
9713
9714
9715
9716
9717
9718
9719
9720
9721
9722
9723
9724
9725
9726
9727
9728
9729
9730
9731
9732
9733
9734
9735
9736
9737
9738
9739
9740
9741
9742
9743
9744
9745
9746
9747
9748
9749
9750
9751
9752
9753
9754
9755
9756
9757
9758
9759
9760
9761
9762
9763
9764
9765
9766
9767
9768
9769
9770
9771
9772
9773
9774
9775
9776
9777
9778
9779
9780
9781
9782
9783
9784
9785
9786
9787
9788
9789
9790
9791
9792
9793
9794
9795
9796
9797
9798
9799
9800
9801
9802
9803
9804
9805
9806
9807
9808
9809
9810
9811
9812
9813
9814
9815
9816
9817
9818
9819
9820
9821
9822
9823
9824
9825
9826
9827
9828
9829
9830
9831
9832
9833
9834
9835
9836
9837
9838
9839
9840
9841
9842
9843
9844
9845
9846
9847
9848
9849
9850
9851
9852
9853
9854
9855
9856
9857
9858
9859
9860
9861
9862
9863
9864
9865
9866
9867
9868
9869
9870
9871
9872
9873
9874
9875
9876
9877
9878
9879
9880
9881
9882
9883
9884
9885
9886
9887
9888
9889
9890
9891
9892
9893
9894
9895
9896
9897
9898
9899
9900
9901
9902
9903
9904
9905
9906
9907
9908
9909
9910
9911
9912
9913
9914
9915
9916
9917
9918
9919
9920
9921
9922
9923
9924
9925
9926
9927
9928
9929
9930
9931
9932
9933
9934
9935
9936
9937
9938
9939
9940
9941
9942
9943
9944
9945
9946
9947
9948
9949
9950
9951
9952
9953
9954
9955
9956
9957
9958
9959
9960
9961
9962
9963
9964
9965
9966
9967
9968
9969
9970
9971
9972
9973
9974
9975
9976
9977
9978
9979
9980
9981
9982
9983
9984
9985
9986
9987
9988
9989
9990
9991
9992
9993
9994
9995
9996
9997
9998
9999
10000
10001
10002
10003
10004
10005
10006
10007
10008
10009
10010
10011
10012
10013
10014
10015
10016
10017
10018
10019
10020
10021
10022
10023
10024
10025
10026
10027
10028
10029
10030
10031
10032
10033
10034
10035
10036
10037
10038
10039
10040
10041
10042
10043
10044
10045
10046
10047
10048
10049
10050
10051
10052
10053
10054
10055
10056
10057
10058
10059
10060
10061
10062
10063
10064
10065
10066
10067
10068
10069
10070
10071
10072
10073
10074
10075
10076
10077
10078
10079
10080
10081
10082
10083
10084
10085
10086
10087
10088
10089
10090
10091
10092
10093
10094
10095
10096
10097
10098
10099
10100
10101
10102
10103
10104
10105
10106
10107
10108
10109
10110
10111
10112
10113
10114
10115
10116
10117
10118
10119
10120
10121
10122
10123
10124
10125
10126
10127
10128
10129
10130
10131
10132
10133
10134
10135
10136
10137
10138
10139
10140
10141
10142
10143
10144
10145
10146
10147
10148
10149
10150
10151
10152
10153
10154
10155
10156
10157
10158
10159
10160
10161
10162
10163
10164
10165
10166
10167
10168
10169
10170
10171
10172
10173
10174
10175
10176
10177
10178
10179
10180
10181
10182
10183
10184
10185
10186
10187
10188
10189
10190
10191
10192
10193
10194
10195
10196
10197
10198
10199
10200
10201
10202
10203
10204
10205
10206
10207
10208
10209
10210
10211
10212
10213
10214
10215
10216
10217
10218
10219
10220
10221
10222
10223
10224
10225
10226
10227
10228
10229
10230
10231
10232
10233
10234
10235
10236
10237
10238
10239
10240
10241
10242
10243
10244
10245
10246
10247
10248
10249
10250
10251
10252
10253
10254
10255
10256
10257
10258
10259
10260
10261
10262
10263
10264
10265
10266
10267
10268
10269
10270
10271
10272
10273
10274
10275
10276
10277
10278
10279
10280
10281
10282
10283
10284
10285
10286
10287
10288
10289
10290
10291
10292
10293
10294
10295
10296
10297
10298
10299
10300
10301
10302
10303
10304
10305
10306
10307
10308
10309
10310
10311
10312
10313
10314
10315
10316
10317
10318
10319
10320
10321
10322
10323
10324
10325
10326
10327
10328
10329
10330
10331
10332
10333
10334
10335
10336
10337
10338
10339
10340
10341
10342
10343
10344
10345
10346
10347
10348
10349
10350
10351
10352
10353
10354
10355
10356
10357
10358
10359
10360
10361
10362
10363
10364
10365
10366
10367
10368
10369
10370
10371
10372
10373
10374
10375
10376
10377
10378
10379
10380
10381
10382
10383
10384
10385
10386
10387
10388
10389
10390
10391
10392
10393
10394
10395
10396
10397
10398
10399
10400
10401
10402
10403
10404
10405
10406
10407
10408
10409
10410
10411
10412
10413
10414
10415
10416
10417
10418
10419
10420
10421
10422
10423
10424
10425
10426
10427
10428
10429
10430
10431
10432
10433
10434
10435
10436
10437
10438
10439
10440
10441
10442
10443
10444
10445
10446
10447
10448
10449
10450
10451
10452
10453
10454
10455
10456
10457
10458
10459
10460
10461
10462
10463
10464
10465
10466
10467
10468
10469
10470
10471
10472
10473
10474
10475
10476
10477
10478
10479
10480
10481
10482
10483
10484
10485
10486
10487
10488
10489
10490
10491
10492
10493
10494
10495
10496
10497
10498
10499
10500
10501
10502
10503
10504
10505
10506
10507
10508
10509
10510
10511
10512
10513
10514
10515
10516
10517
10518
10519
10520
10521
10522
10523
10524
10525
10526
10527
10528
10529
10530
10531
10532
10533
10534
10535
10536
10537
10538
10539
10540
10541
10542
10543
10544
10545
10546
10547
10548
10549
10550
10551
10552
10553
10554
10555
10556
10557
10558
10559
10560
10561
10562
10563
10564
10565
10566
10567
10568
10569
10570
10571
10572
10573
10574
10575
10576
10577
10578
10579
10580
10581
10582
10583
10584
10585
10586
10587
10588
10589
10590
10591
10592
10593
10594
10595
10596
10597
10598
10599
10600
10601
10602
10603
10604
10605
10606
10607
10608
10609
10610
10611
10612
10613
10614
10615
10616
10617
10618
10619
10620
10621
10622
10623
10624
10625
10626
10627
10628
10629
10630
10631
10632
10633
10634
10635
10636
10637
10638
10639
10640
10641
10642
10643
10644
10645
10646
10647
10648
10649
10650
10651
10652
10653
10654
10655
10656
10657
10658
10659
10660
10661
10662
10663
10664
10665
10666
10667
10668
10669
10670
10671
10672
10673
10674
10675
10676
10677
10678
10679
10680
10681
10682
10683
10684
10685
10686
10687
10688
10689
10690
10691
10692
10693
10694
10695
10696
10697
10698
10699
10700
10701
10702
10703
10704
10705
10706
10707
10708
10709
10710
10711
10712
10713
10714
10715
10716
10717
10718
10719
10720
10721
10722
10723
10724
10725
10726
10727
10728
10729
10730
10731
10732
10733
10734
10735
10736
10737
10738
10739
10740
10741
10742
10743
10744
10745
10746
10747
10748
10749
10750
10751
10752
10753
10754
10755
10756
10757
10758
10759
10760
10761
10762
10763
10764
10765
10766
10767
10768
10769
10770
10771
10772
10773
10774
10775
10776
10777
10778
10779
10780
10781
10782
10783
10784
10785
10786
10787
10788
10789
10790
10791
10792
10793
10794
10795
10796
10797
10798
10799
10800
10801
10802
10803
10804
10805
10806
10807
10808
10809
10810
10811
10812
10813
10814
10815
10816
10817
10818
10819
10820
10821
10822
10823
10824
10825
10826
10827
10828
10829
10830
10831
10832
10833
10834
10835
10836
10837
10838
10839
10840
10841
10842
10843
10844
10845
10846
10847
10848
10849
10850
10851
10852
10853
10854
10855
10856
10857
10858
10859
10860
10861
10862
10863
10864
10865
10866
10867
10868
10869
10870
10871
10872
10873
10874
10875
10876
10877
10878
10879
10880
10881
10882
10883
10884
10885
10886
10887
10888
10889
10890
10891
10892
10893
10894
10895
10896
10897
10898
10899
10900
10901
10902
10903
10904
10905
10906
10907
10908
10909
10910
10911
10912
10913
10914
10915
10916
10917
10918
10919
10920
10921
10922
10923
10924
10925
10926
10927
10928
10929
10930
10931
10932
10933
10934
10935
10936
10937
10938
10939
10940
10941
10942
10943
10944
10945
10946
10947
10948
10949
10950
10951
10952
10953
10954
10955
10956
10957
10958
10959
10960
10961
10962
10963
10964
10965
10966
10967
10968
10969
10970
10971
10972
10973
10974
10975
10976
10977
10978
10979
10980
10981
10982
10983
10984
10985
10986
10987
10988
10989
10990
10991
10992
10993
10994
10995
10996
10997
10998
10999
11000
11001
11002
11003
11004
11005
11006
11007
11008
11009
11010
11011
11012
11013
11014
11015
11016
11017
11018
11019
11020
11021
11022
11023
11024
11025
11026
11027
11028
11029
11030
11031
11032
11033
11034
11035
11036
11037
11038
11039
11040
11041
11042
11043
11044
11045
11046
11047
11048
11049
11050
11051
11052
11053
11054
11055
11056
11057
11058
11059
11060
11061
11062
11063
11064
11065
11066
11067
11068
11069
11070
11071
11072
11073
11074
11075
11076
11077
11078
11079
11080
11081
11082
11083
11084
11085
11086
11087
11088
11089
11090
11091
11092
11093
11094
11095
11096
11097
11098
11099
11100
11101
11102
11103
11104
11105
11106
11107
11108
11109
11110
11111
11112
11113
11114
11115
11116
11117
11118
11119
11120
11121
11122
11123
11124
11125
11126
11127
11128
11129
11130
11131
11132
11133
11134
11135
11136
11137
11138
11139
11140
11141
11142
11143
11144
11145
11146
11147
11148
11149
11150
11151
11152
11153
11154
11155
11156
11157
11158
11159
11160
11161
11162
11163
11164
11165
11166
11167
11168
11169
11170
11171
11172
11173
11174
11175
11176
11177
11178
11179
11180
11181
11182
11183
11184
11185
11186
11187
11188
11189
11190
11191
11192
11193
11194
11195
11196
11197
11198
11199
11200
11201
11202
11203
11204
11205
11206
11207
11208
11209
11210
11211
11212
11213
11214
11215
11216
11217
11218
11219
11220
11221
11222
11223
11224
11225
11226
11227
11228
11229
11230
11231
11232
11233
11234
11235
11236
11237
11238
11239
11240
11241
11242
11243
11244
11245
11246
11247
11248
11249
11250
11251
11252
11253
11254
11255
11256
11257
11258
11259
11260
11261
11262
11263
11264
11265
11266
11267
11268
11269
11270
11271
11272
11273
11274
11275
11276
11277
11278
11279
11280
11281
11282
11283
11284
11285
11286
11287
11288
11289
11290
11291
11292
11293
11294
11295
11296
11297
11298
11299
11300
11301
11302
11303
11304
11305
11306
11307
11308
11309
11310
11311
11312
11313
11314
11315
11316
11317
11318
11319
11320
11321
11322
11323
11324
11325
11326
11327
11328
11329
11330
11331
11332
11333
11334
11335
11336
11337
11338
11339
11340
11341
11342
11343
11344
11345
11346
11347
11348
11349
11350
11351
11352
11353
11354
11355
11356
11357
11358
11359
11360
11361
11362
11363
11364
11365
11366
11367
11368
11369
11370
11371
11372
11373
11374
11375
11376
11377
11378
11379
11380
11381
11382
11383
11384
11385
11386
11387
11388
11389
11390
11391
11392
11393
11394
11395
11396
11397
11398
11399
11400
11401
11402
11403
11404
11405
11406
11407
11408
11409
11410
11411
11412
11413
11414
11415
11416
11417
11418
11419
11420
11421
11422
11423
11424
11425
11426
11427
11428
11429
11430
11431
11432
11433
11434
11435
11436
11437
11438
11439
11440
11441
11442
11443
11444
11445
11446
11447
11448
11449
11450
11451
11452
11453
11454
11455
11456
11457
11458
11459
11460
11461
11462
11463
11464
11465
11466
11467
11468
11469
11470
11471
11472
11473
11474
11475
11476
11477
11478
11479
11480
11481
11482
11483
11484
11485
11486
11487
11488
11489
11490
11491
11492
11493
11494
11495
11496
11497
11498
11499
11500
11501
11502
11503
11504
11505
11506
11507
11508
11509
11510
11511
11512
11513
11514
11515
11516
11517
11518
11519
11520
11521
11522
11523
11524
11525
11526
11527
11528
11529
11530
11531
11532
11533
11534
11535
11536
11537
11538
11539
11540
11541
11542
11543
11544
11545
11546
11547
11548
11549
11550
11551
11552
11553
11554
11555
11556
11557
11558
11559
11560
11561
11562
11563
11564
11565
11566
11567
11568
11569
11570
11571
11572
11573
11574
11575
11576
11577
11578
11579
11580
11581
11582
11583
11584
11585
11586
11587
11588
11589
11590
11591
11592
11593
11594
11595
11596
11597
11598
11599
11600
11601
11602
11603
11604
11605
11606
11607
11608
11609
11610
11611
11612
11613
11614
11615
11616
11617
11618
11619
11620
11621
11622
11623
11624
11625
11626
11627
11628
11629
11630
11631
11632
11633
11634
11635
11636
11637
11638
11639
11640
11641
11642
11643
11644
11645
11646
11647
11648
11649
11650
11651
11652
11653
11654
11655
11656
11657
11658
11659
11660
11661
11662
11663
11664
11665
11666
11667
11668
11669
11670
11671
11672
11673
11674
11675
11676
11677
11678
11679
11680
11681
11682
11683
11684
11685
11686
11687
11688
11689
11690
11691
11692
11693
11694
11695
11696
11697
11698
11699
11700
11701
11702
11703
11704
11705
11706
11707
11708
11709
11710
11711
11712
11713
11714
11715
11716
11717
11718
11719
11720
11721
11722
11723
11724
11725
11726
11727
11728
11729
11730
11731
11732
11733
11734
11735
11736
11737
11738
11739
11740
11741
11742
11743
11744
11745
11746
11747
11748
11749
11750
11751
11752
11753
11754
11755
11756
11757
11758
11759
11760
11761
11762
11763
11764
11765
11766
11767
11768
11769
11770
11771
11772
11773
11774
11775
11776
11777
11778
11779
11780
11781
11782
11783
11784
11785
11786
11787
11788
11789
11790
11791
11792
11793
11794
11795
11796
11797
11798
11799
11800
11801
11802
11803
11804
11805
11806
11807
11808
11809
11810
11811
11812
11813
11814
11815
11816
11817
11818
11819
11820
11821
11822
11823
11824
11825
11826
11827
11828
11829
11830
11831
11832
11833
11834
11835
11836
11837
11838
11839
11840
11841
11842
11843
11844
11845
11846
11847
11848
11849
11850
11851
11852
11853
11854
11855
11856
11857
11858
11859
11860
11861
11862
11863
11864
11865
11866
11867
11868
11869
11870
11871
11872
11873
11874
11875
11876
11877
11878
11879
11880
11881
11882
11883
11884
11885
11886
11887
11888
11889
11890
11891
11892
11893
11894
11895
11896
11897
11898
11899
11900
11901
11902
11903
11904
11905
11906
11907
11908
11909
11910
11911
11912
11913
11914
11915
11916
11917
11918
11919
11920
11921
11922
11923
11924
11925
11926
11927
11928
11929
11930
11931
11932
11933
11934
11935
11936
11937
11938
11939
11940
11941
11942
11943
11944
11945
11946
11947
11948
11949
11950
11951
11952
11953
11954
11955
11956
11957
11958
11959
11960
11961
11962
11963
11964
11965
11966
11967
11968
11969
11970
11971
11972
11973
11974
11975
11976
11977
11978
11979
11980
11981
11982
11983
11984
11985
11986
11987
11988
11989
11990
11991
11992
11993
11994
11995
11996
11997
11998
11999
12000
12001
12002
12003
12004
12005
12006
12007
12008
12009
12010
12011
12012
12013
12014
12015
12016
12017
12018
12019
12020
12021
12022
12023
12024
12025
12026
12027
12028
12029
12030
12031
12032
12033
12034
12035
12036
12037
12038
12039
12040
12041
12042
12043
12044
12045
12046
12047
12048
12049
12050
12051
12052
12053
12054
12055
12056
12057
12058
12059
12060
12061
12062
12063
12064
12065
12066
12067
12068
12069
12070
12071
12072
12073
12074
12075
12076
12077
12078
12079
12080
12081
12082
12083
12084
12085
12086
12087
12088
12089
12090
12091
12092
12093
12094
12095
12096
12097
12098
12099
12100
12101
12102
12103
12104
12105
12106
12107
12108
12109
12110
12111
12112
12113
12114
12115
12116
12117
12118
12119
12120
12121
12122
12123
12124
12125
12126
12127
12128
12129
12130
12131
12132
12133
12134
12135
12136
12137
12138
12139
12140
12141
12142
12143
12144
12145
12146
12147
12148
12149
12150
12151
12152
12153
12154
12155
12156
12157
12158
12159
12160
12161
12162
12163
12164
12165
12166
12167
12168
12169
12170
12171
12172
12173
12174
12175
12176
12177
12178
12179
12180
12181
12182
12183
12184
12185
12186
12187
12188
12189
12190
12191
12192
12193
12194
12195
12196
12197
12198
12199
12200
12201
12202
12203
12204
12205
12206
12207
12208
12209
12210
12211
12212
12213
12214
12215
12216
12217
12218
12219
12220
12221
12222
12223
12224
12225
12226
12227
12228
12229
12230
12231
12232
12233
12234
12235
12236
12237
12238
12239
12240
12241
12242
12243
12244
12245
12246
12247
12248
12249
12250
12251
12252
12253
12254
12255
12256
12257
12258
12259
12260
12261
12262
12263
12264
12265
12266
12267
12268
12269
12270
12271
12272
12273
12274
12275
12276
12277
12278
12279
12280
12281
12282
12283
12284
12285
12286
12287
12288
12289
12290
12291
12292
12293
12294
12295
12296
12297
12298
12299
12300
12301
12302
12303
12304
12305
12306
12307
12308
12309
12310
12311
12312
12313
12314
12315
12316
12317
12318
12319
12320
12321
12322
12323
12324
12325
12326
12327
12328
12329
12330
12331
12332
12333
12334
12335
12336
12337
12338
12339
12340
12341
12342
12343
12344
12345
12346
12347
12348
12349
12350
12351
12352
12353
12354
12355
12356
12357
12358
12359
12360
12361
12362
12363
12364
12365
12366
12367
12368
12369
12370
12371
12372
12373
12374
12375
12376
12377
12378
12379
12380
12381
12382
12383
12384
12385
12386
12387
12388
12389
12390
12391
12392
12393
12394
12395
12396
12397
12398
12399
12400
12401
12402
12403
12404
12405
12406
12407
12408
12409
12410
12411
12412
12413
12414
12415
12416
12417
12418
12419
12420
12421
12422
12423
12424
12425
12426
12427
12428
12429
12430
12431
12432
12433
12434
12435
12436
12437
12438
12439
12440
12441
12442
12443
12444
12445
12446
12447
12448
12449
12450
12451
12452
12453
12454
12455
12456
12457
12458
12459
12460
12461
12462
12463
12464
12465
12466
12467
12468
12469
12470
12471
12472
12473
12474
12475
12476
12477
12478
12479
12480
12481
12482
12483
12484
12485
12486
12487
12488
12489
12490
12491
12492
12493
12494
12495
12496
12497
12498
12499
12500
12501
12502
12503
12504
12505
12506
12507
12508
12509
12510
12511
12512
12513
12514
12515
12516
12517
12518
12519
12520
12521
12522
12523
12524
12525
12526
12527
12528
12529
12530
12531
12532
12533
12534
12535
12536
12537
12538
12539
12540
12541
12542
12543
12544
12545
12546
12547
12548
12549
12550
12551
12552
12553
12554
12555
12556
12557
12558
12559
12560
12561
12562
12563
12564
12565
12566
12567
12568
12569
12570
12571
12572
12573
12574
12575
12576
12577
12578
12579
12580
12581
12582
12583
12584
12585
12586
12587
12588
12589
12590
12591
12592
12593
12594
12595
12596
12597
12598
12599
12600
12601
12602
12603
12604
12605
12606
12607
12608
12609
12610
12611
12612
12613
12614
12615
12616
12617
12618
12619
12620
12621
12622
12623
12624
12625
12626
12627
12628
12629
12630
12631
12632
12633
12634
12635
12636
12637
12638
12639
12640
12641
12642
12643
12644
12645
12646
12647
12648
12649
12650
12651
12652
12653
12654
12655
12656
12657
12658
12659
12660
12661
12662
12663
12664
12665
12666
12667
12668
12669
12670
12671
12672
12673
12674
12675
12676
12677
12678
12679
12680
12681
12682
12683
12684
12685
12686
12687
12688
12689
12690
12691
12692
12693
12694
12695
12696
12697
12698
12699
12700
12701
12702
12703
12704
12705
12706
12707
12708
12709
12710
12711
12712
12713
12714
12715
12716
12717
12718
12719
12720
12721
12722
12723
12724
12725
12726
12727
12728
12729
12730
12731
12732
12733
12734
12735
12736
12737
12738
12739
12740
12741
12742
12743
12744
12745
12746
12747
12748
12749
12750
12751
12752
12753
12754
12755
12756
12757
12758
12759
12760
12761
12762
12763
12764
12765
12766
12767
12768
12769
12770
12771
12772
12773
12774
12775
12776
12777
12778
12779
12780
12781
12782
12783
12784
12785
12786
12787
12788
12789
12790
12791
12792
12793
12794
12795
12796
12797
12798
12799
12800
12801
12802
12803
12804
12805
12806
12807
12808
12809
12810
12811
12812
12813
12814
12815
12816
12817
12818
12819
12820
12821
12822
12823
12824
12825
12826
12827
12828
12829
12830
12831
12832
12833
12834
12835
12836
12837
12838
12839
12840
12841
12842
12843
12844
12845
12846
12847
12848
12849
12850
12851
12852
12853
12854
12855
12856
12857
12858
12859
12860
12861
12862
12863
12864
12865
12866
12867
12868
12869
12870
12871
12872
12873
12874
12875
12876
12877
12878
12879
12880
12881
12882
12883
12884
12885
12886
12887
12888
12889
12890
12891
12892
12893
12894
12895
12896
12897
12898
12899
12900
12901
12902
12903
12904
12905
12906
12907
12908
12909
12910
12911
12912
12913
12914
12915
12916
12917
12918
12919
12920
12921
12922
12923
12924
12925
12926
12927
12928
12929
12930
12931
12932
12933
12934
12935
12936
12937
12938
12939
12940
12941
12942
12943
12944
12945
12946
12947
12948
12949
12950
12951
12952
12953
12954
12955
12956
12957
12958
12959
12960
12961
12962
12963
12964
12965
12966
12967
12968
12969
12970
12971
12972
12973
12974
12975
12976
12977
12978
12979
12980
12981
12982
12983
12984
12985
12986
12987
12988
12989
12990
12991
12992
12993
12994
12995
12996
12997
12998
12999
13000
13001
13002
13003
13004
13005
13006
13007
13008
13009
13010
13011
13012
13013
13014
13015
13016
13017
13018
13019
13020
13021
13022
13023
13024
13025
13026
13027
13028
13029
13030
13031
13032
13033
13034
13035
13036
13037
13038
13039
13040
13041
13042
13043
13044
13045
13046
13047
13048
13049
13050
13051
13052
13053
13054
13055
13056
13057
13058
13059
13060
13061
13062
13063
13064
13065
13066
13067
13068
13069
13070
13071
13072
13073
13074
13075
13076
13077
13078
13079
13080
13081
13082
13083
13084
13085
13086
13087
13088
13089
13090
13091
13092
13093
13094
13095
13096
13097
13098
13099
13100
13101
13102
13103
13104
13105
13106
13107
13108
13109
13110
13111
13112
13113
13114
13115
13116
13117
13118
13119
13120
13121
13122
13123
13124
13125
13126
13127
13128
13129
13130
13131
13132
13133
13134
13135
13136
13137
13138
13139
13140
13141
13142
13143
13144
13145
13146
13147
13148
13149
13150
13151
13152
13153
13154
13155
13156
13157
13158
13159
13160
13161
13162
13163
13164
13165
13166
13167
13168
13169
13170
13171
13172
13173
13174
13175
13176
13177
13178
13179
13180
13181
13182
13183
13184
13185
13186
13187
13188
13189
13190
13191
13192
13193
13194
13195
13196
13197
13198
13199
13200
13201
13202
13203
13204
13205
13206
13207
13208
13209
13210
13211
13212
13213
13214
13215
13216
13217
13218
13219
13220
13221
13222
13223
13224
13225
13226
13227
13228
13229
13230
13231
13232
13233
13234
13235
13236
13237
13238
13239
13240
13241
13242
13243
13244
13245
13246
13247
13248
13249
13250
13251
13252
13253
13254
13255
13256
13257
13258
13259
13260
13261
13262
13263
13264
13265
13266
13267
13268
13269
13270
13271
13272
13273
13274
13275
13276
13277
13278
13279
13280
13281
13282
13283
13284
13285
13286
13287
13288
13289
13290
13291
13292
13293
13294
13295
13296
13297
13298
13299
13300
13301
13302
13303
13304
13305
13306
13307
13308
13309
13310
13311
13312
13313
13314
13315
13316
13317
13318
13319
13320
13321
13322
13323
13324
13325
13326
13327
13328
13329
13330
13331
13332
13333
13334
13335
13336
13337
13338
13339
13340
13341
13342
13343
13344
13345
13346
13347
13348
13349
13350
13351
13352
13353
13354
13355
13356
13357
13358
13359
13360
13361
13362
13363
13364
13365
13366
13367
13368
13369
13370
13371
13372
13373
13374
13375
13376
13377
13378
13379
13380
13381
13382
13383
13384
13385
13386
13387
13388
13389
13390
13391
13392
13393
13394
13395
13396
13397
13398
13399
13400
13401
13402
13403
13404
13405
13406
13407
13408
13409
13410
13411
13412
13413
13414
13415
13416
13417
13418
13419
13420
13421
13422
13423
13424
13425
13426
13427
13428
13429
13430
13431
13432
13433
13434
13435
13436
13437
13438
13439
13440
13441
13442
13443
13444
13445
13446
13447
13448
13449
13450
13451
13452
13453
13454
13455
13456
13457
13458
13459
13460
13461
13462
13463
13464
13465
13466
13467
13468
13469
13470
13471
13472
13473
13474
13475
13476
13477
13478
13479
13480
13481
13482
13483
13484
13485
13486
13487
13488
13489
13490
13491
13492
13493
13494
13495
13496
13497
13498
13499
13500
13501
13502
13503
13504
13505
13506
13507
13508
13509
13510
13511
13512
13513
13514
13515
13516
13517
13518
13519
13520
13521
13522
13523
13524
13525
13526
13527
13528
13529
13530
13531
13532
13533
13534
13535
13536
13537
13538
13539
13540
13541
13542
13543
13544
13545
13546
13547
13548
13549
13550
13551
13552
13553
13554
13555
13556
13557
13558
13559
13560
13561
13562
13563
13564
13565
13566
13567
13568
13569
13570
13571
13572
13573
13574
13575
13576
13577
13578
13579
13580
13581
13582
13583
13584
13585
13586
13587
13588
13589
13590
13591
13592
13593
13594
13595
13596
13597
13598
13599
13600
13601
13602
13603
13604
13605
13606
13607
13608
13609
13610
13611
13612
13613
13614
13615
13616
13617
13618
13619
13620
13621
13622
13623
13624
13625
13626
13627
13628
13629
13630
13631
13632
13633
13634
13635
13636
13637
13638
13639
13640
13641
13642
13643
13644
13645
13646
13647
13648
13649
13650
13651
13652
13653
13654
13655
13656
13657
13658
13659
13660
13661
13662
13663
13664
13665
13666
13667
13668
13669
13670
13671
13672
13673
13674
13675
13676
13677
13678
13679
13680
13681
13682
13683
13684
13685
13686
13687
13688
13689
13690
13691
13692
13693
13694
13695
13696
13697
13698
13699
13700
13701
13702
13703
13704
13705
13706
13707
13708
13709
13710
13711
13712
13713
13714
13715
13716
13717
13718
13719
13720
13721
13722
13723
13724
13725
13726
13727
13728
13729
13730
13731
13732
13733
13734
13735
13736
13737
13738
13739
13740
13741
13742
13743
13744
13745
13746
13747
13748
13749
13750
13751
13752
13753
13754
13755
13756
13757
13758
13759
13760
13761
13762
13763
13764
13765
13766
13767
13768
13769
13770
13771
13772
13773
13774
13775
13776
13777
13778
13779
13780
13781
13782
13783
13784
13785
13786
13787
13788
13789
13790
13791
13792
13793
13794
13795
13796
13797
13798
13799
13800
13801
13802
13803
13804
13805
13806
13807
13808
13809
13810
13811
13812
13813
13814
13815
13816
13817
13818
13819
13820
13821
13822
13823
13824
13825
13826
13827
13828
13829
13830
13831
13832
13833
13834
13835
13836
13837
13838
13839
13840
13841
13842
13843
13844
13845
13846
13847
13848
13849
13850
13851
13852
13853
13854
13855
13856
13857
13858
13859
13860
13861
13862
13863
13864
13865
13866
13867
13868
13869
13870
13871
13872
13873
13874
13875
13876
13877
13878
13879
13880
13881
13882
13883
13884
13885
13886
13887
13888
13889
13890
13891
13892
13893
13894
13895
13896
13897
13898
13899
13900
13901
13902
13903
13904
13905
13906
13907
13908
13909
13910
13911
13912
13913
13914
13915
13916
13917
13918
13919
13920
13921
13922
13923
13924
13925
13926
13927
13928
13929
13930
13931
13932
13933
13934
13935
13936
13937
13938
13939
13940
13941
13942
13943
13944
13945
13946
13947
13948
13949
13950
13951
13952
13953
13954
13955
13956
13957
13958
13959
13960
13961
13962
13963
13964
13965
13966
13967
13968
13969
13970
13971
13972
13973
13974
13975
13976
13977
13978
13979
13980
13981
13982
13983
13984
13985
13986
13987
13988
13989
13990
13991
13992
13993
13994
13995
13996
13997
13998
13999
14000
14001
14002
14003
14004
14005
14006
14007
14008
14009
14010
14011
14012
14013
14014
14015
14016
14017
14018
14019
14020
14021
14022
14023
14024
14025
14026
14027
14028
14029
14030
14031
14032
14033
14034
14035
14036
14037
14038
14039
14040
14041
14042
14043
14044
14045
14046
14047
14048
14049
14050
14051
14052
14053
14054
14055
14056
14057
14058
14059
14060
14061
14062
14063
14064
14065
14066
14067
14068
14069
14070
14071
14072
14073
14074
14075
14076
14077
14078
14079
14080
14081
14082
14083
14084
14085
14086
14087
14088
14089
14090
14091
14092
14093
14094
14095
14096
14097
14098
14099
14100
14101
14102
14103
14104
14105
14106
14107
14108
14109
14110
14111
14112
14113
14114
14115
14116
14117
14118
14119
14120
14121
14122
14123
14124
14125
14126
14127
14128
14129
14130
14131
14132
14133
14134
14135
14136
14137
14138
14139
14140
14141
14142
14143
14144
14145
14146
14147
14148
14149
14150
14151
14152
14153
14154
14155
14156
14157
14158
14159
14160
14161
14162
14163
14164
14165
14166
14167
14168
14169
14170
14171
14172
14173
14174
14175
14176
14177
14178
14179
14180
14181
14182
14183
14184
14185
14186
14187
14188
14189
14190
14191
14192
14193
14194
14195
14196
14197
14198
14199
14200
14201
14202
14203
14204
14205
14206
14207
14208
14209
14210
14211
14212
14213
14214
14215
14216
14217
14218
14219
14220
14221
14222
14223
14224
14225
14226
14227
14228
14229
14230
14231
14232
14233
14234
14235
14236
14237
14238
14239
14240
14241
14242
14243
14244
14245
14246
14247
14248
14249
14250
14251
14252
14253
14254
14255
14256
14257
14258
14259
14260
14261
14262
14263
14264
14265
14266
14267
14268
14269
14270
14271
14272
14273
14274
14275
14276
14277
14278
14279
14280
14281
14282
14283
14284
14285
14286
14287
14288
14289
14290
14291
14292
14293
14294
14295
14296
14297
14298
14299
14300
14301
14302
14303
14304
14305
14306
14307
14308
14309
14310
14311
14312
14313
14314
14315
14316
14317
14318
14319
14320
14321
14322
14323
14324
14325
14326
14327
14328
14329
14330
14331
14332
14333
14334
14335
14336
14337
14338
14339
14340
14341
14342
14343
14344
14345
14346
14347
14348
14349
14350
14351
14352
14353
14354
14355
14356
14357
14358
14359
14360
14361
14362
14363
14364
14365
14366
14367
14368
14369
14370
14371
14372
14373
14374
14375
14376
14377
14378
14379
14380
14381
14382
14383
14384
14385
14386
14387
14388
14389
14390
14391
14392
14393
14394
14395
14396
14397
14398
14399
14400
14401
14402
14403
14404
14405
14406
14407
14408
14409
14410
14411
14412
14413
14414
14415
14416
14417
14418
14419
14420
14421
14422
14423
14424
14425
14426
14427
14428
14429
14430
14431
14432
14433
14434
14435
14436
14437
14438
14439
14440
14441
14442
14443
14444
14445
14446
14447
14448
14449
14450
14451
14452
14453
14454
14455
14456
14457
14458
14459
14460
14461
14462
14463
14464
14465
14466
14467
14468
14469
14470
14471
14472
14473
14474
14475
14476
14477
14478
14479
14480
14481
14482
14483
14484
14485
14486
14487
14488
14489
14490
14491
14492
14493
14494
14495
14496
14497
14498
14499
14500
14501
14502
14503
14504
14505
14506
14507
14508
14509
14510
14511
14512
14513
14514
14515
14516
14517
14518
14519
14520
14521
14522
14523
14524
14525
14526
14527
14528
14529
14530
14531
14532
14533
14534
14535
14536
14537
14538
14539
14540
14541
14542
14543
14544
14545
14546
14547
14548
14549
14550
14551
14552
14553
14554
14555
14556
14557
14558
14559
14560
14561
14562
14563
14564
14565
14566
14567
14568
14569
14570
14571
14572
14573
14574
14575
14576
14577
14578
14579
14580
14581
14582
14583
14584
14585
14586
14587
14588
14589
14590
14591
14592
14593
14594
14595
14596
14597
14598
14599
14600
14601
14602
14603
14604
14605
14606
14607
14608
14609
14610
14611
14612
14613
14614
14615
14616
14617
14618
14619
14620
14621
14622
14623
14624
14625
14626
14627
14628
14629
14630
14631
14632
14633
14634
14635
14636
14637
14638
14639
14640
14641
14642
14643
14644
14645
14646
14647
14648
14649
14650
14651
14652
14653
14654
14655
14656
14657
14658
14659
14660
14661
14662
14663
14664
14665
14666
14667
14668
14669
14670
14671
14672
14673
14674
14675
14676
14677
14678
14679
14680
14681
14682
14683
14684
14685
14686
14687
14688
14689
14690
14691
14692
14693
14694
14695
14696
14697
14698
14699
14700
14701
14702
14703
14704
14705
14706
14707
14708
14709
14710
14711
14712
14713
14714
14715
14716
14717
14718
14719
14720
14721
14722
14723
14724
14725
14726
14727
14728
14729
14730
14731
14732
14733
14734
14735
14736
14737
14738
14739
14740
14741
14742
14743
14744
14745
14746
14747
14748
14749
14750
14751
14752
14753
14754
14755
14756
14757
14758
14759
14760
14761
14762
14763
14764
14765
14766
14767
14768
14769
14770
14771
14772
14773
14774
14775
14776
14777
14778
14779
14780
14781
14782
14783
14784
14785
14786
14787
14788
14789
14790
14791
14792
14793
14794
14795
14796
14797
14798
14799
14800
14801
14802
14803
14804
14805
14806
14807
14808
14809
14810
14811
14812
14813
14814
14815
14816
14817
14818
14819
14820
14821
14822
14823
14824
14825
14826
14827
14828
14829
14830
14831
14832
14833
14834
14835
14836
14837
14838
14839
14840
14841
14842
14843
14844
14845
14846
14847
14848
14849
14850
14851
14852
14853
14854
14855
14856
14857
14858
14859
14860
14861
14862
14863
14864
14865
14866
14867
14868
14869
14870
14871
14872
14873
14874
14875
14876
14877
14878
14879
14880
14881
14882
14883
14884
14885
14886
14887
14888
14889
14890
14891
14892
14893
14894
14895
14896
14897
14898
14899
14900
14901
14902
14903
14904
14905
14906
14907
14908
14909
14910
14911
14912
14913
14914
14915
14916
14917
14918
14919
14920
14921
14922
14923
14924
14925
14926
14927
14928
14929
14930
14931
14932
14933
14934
14935
14936
14937
14938
14939
14940
14941
14942
14943
14944
14945
14946
14947
14948
14949
14950
14951
14952
14953
14954
14955
14956
14957
14958
14959
14960
14961
14962
14963
14964
14965
14966
14967
14968
14969
14970
14971
14972
14973
14974
14975
14976
14977
14978
14979
14980
14981
14982
14983
14984
14985
14986
14987
14988
14989
14990
14991
14992
14993
14994
14995
14996
14997
14998
14999
15000
15001
15002
15003
15004
15005
15006
15007
15008
15009
15010
15011
15012
15013
15014
15015
15016
15017
15018
15019
15020
15021
15022
15023
15024
15025
15026
15027
15028
15029
15030
15031
15032
15033
15034
15035
15036
15037
15038
15039
15040
15041
15042
15043
15044
15045
15046
15047
15048
15049
15050
15051
15052
15053
15054
15055
15056
15057
15058
15059
15060
15061
15062
15063
15064
15065
15066
15067
15068
15069
15070
15071
15072
15073
15074
15075
15076
15077
15078
15079
15080
15081
15082
15083
15084
15085
15086
15087
15088
15089
15090
15091
15092
15093
15094
15095
15096
15097
15098
15099
15100
15101
15102
15103
15104
15105
15106
15107
15108
15109
15110
15111
15112
15113
15114
15115
15116
15117
15118
15119
15120
15121
15122
15123
15124
15125
15126
15127
15128
15129
15130
15131
15132
15133
15134
15135
15136
15137
15138
15139
15140
15141
15142
15143
15144
15145
15146
15147
15148
15149
15150
15151
15152
15153
15154
15155
15156
15157
15158
15159
15160
15161
15162
15163
15164
15165
15166
15167
15168
15169
15170
15171
15172
15173
15174
15175
15176
15177
15178
15179
15180
15181
15182
15183
15184
15185
15186
15187
15188
15189
15190
15191
15192
15193
15194
15195
15196
15197
15198
15199
15200
15201
15202
15203
15204
15205
15206
15207
15208
15209
15210
15211
15212
15213
15214
15215
15216
15217
15218
15219
15220
15221
15222
15223
15224
15225
15226
15227
15228
15229
15230
15231
15232
15233
15234
15235
15236
15237
15238
15239
15240
15241
15242
15243
15244
15245
15246
15247
15248
15249
15250
15251
15252
15253
15254
15255
15256
15257
15258
15259
15260
15261
15262
15263
15264
15265
15266
15267
15268
15269
15270
15271
15272
15273
15274
15275
15276
15277
15278
15279
15280
15281
15282
15283
15284
15285
15286
15287
15288
15289
15290
15291
15292
15293
15294
15295
15296
15297
15298
15299
15300
15301
15302
15303
15304
15305
15306
15307
15308
15309
15310
15311
15312
15313
15314
15315
15316
15317
15318
15319
15320
15321
15322
15323
15324
15325
15326
15327
15328
15329
15330
15331
15332
15333
15334
15335
15336
15337
15338
15339
15340
15341
15342
15343
15344
15345
15346
15347
15348
15349
15350
15351
15352
15353
15354
15355
15356
15357
15358
15359
15360
15361
15362
15363
15364
15365
15366
15367
15368
15369
15370
15371
15372
15373
15374
15375
15376
15377
15378
15379
15380
15381
15382
15383
15384
15385
15386
15387
15388
15389
15390
15391
15392
15393
15394
15395
15396
15397
15398
15399
15400
15401
15402
15403
15404
15405
15406
15407
15408
15409
15410
15411
15412
15413
15414
15415
15416
15417
15418
15419
15420
15421
15422
15423
15424
15425
15426
15427
15428
15429
15430
15431
15432
15433
15434
15435
15436
15437
15438
15439
15440
15441
15442
15443
15444
15445
15446
15447
15448
15449
15450
15451
15452
15453
15454
15455
15456
15457
15458
15459
15460
15461
15462
15463
15464
15465
15466
15467
15468
15469
15470
15471
15472
15473
15474
15475
15476
15477
15478
15479
15480
15481
15482
15483
15484
15485
15486
15487
15488
15489
15490
15491
15492
15493
15494
15495
15496
15497
15498
15499
15500
15501
15502
15503
15504
15505
15506
15507
15508
15509
15510
15511
15512
15513
15514
15515
15516
15517
15518
15519
15520
15521
15522
15523
15524
15525
15526
15527
15528
15529
15530
15531
15532
15533
15534
15535
15536
15537
15538
15539
15540
15541
15542
15543
15544
15545
15546
15547
15548
15549
15550
15551
15552
15553
15554
15555
15556
15557
15558
15559
15560
15561
15562
15563
15564
15565
15566
15567
15568
15569
15570
15571
15572
15573
15574
15575
15576
15577
15578
15579
15580
15581
15582
15583
15584
15585
15586
15587
15588
15589
15590
15591
15592
15593
15594
15595
15596
15597
15598
15599
15600
15601
15602
15603
15604
15605
15606
15607
15608
15609
15610
15611
15612
15613
15614
15615
15616
15617
15618
15619
15620
15621
15622
15623
15624
15625
15626
15627
15628
15629
15630
15631
15632
15633
15634
15635
15636
15637
15638
15639
15640
15641
15642
15643
15644
15645
15646
15647
15648
15649
15650
15651
15652
15653
15654
15655
15656
15657
15658
15659
15660
15661
15662
15663
15664
15665
15666
15667
15668
15669
15670
15671
15672
15673
15674
15675
15676
15677
15678
15679
15680
15681
15682
15683
15684
15685
15686
15687
15688
15689
15690
15691
15692
15693
15694
15695
15696
15697
15698
15699
15700
15701
15702
15703
15704
15705
15706
15707
15708
15709
15710
15711
15712
15713
15714
15715
15716
15717
15718
15719
15720
15721
15722
15723
15724
15725
15726
15727
15728
15729
15730
15731
15732
15733
15734
15735
15736
15737
15738
15739
15740
15741
15742
15743
15744
15745
15746
15747
15748
15749
15750
15751
15752
15753
15754
15755
15756
15757
15758
15759
15760
15761
15762
15763
15764
15765
15766
15767
15768
15769
15770
15771
15772
15773
15774
15775
15776
15777
15778
15779
15780
15781
15782
15783
15784
15785
15786
15787
15788
15789
15790
15791
15792
15793
15794
15795
15796
15797
15798
15799
15800
15801
15802
15803
15804
15805
15806
15807
15808
15809
15810
15811
15812
15813
15814
15815
15816
15817
15818
15819
15820
15821
15822
15823
15824
15825
15826
15827
15828
15829
15830
15831
15832
15833
15834
15835
15836
15837
15838
15839
15840
15841
15842
15843
15844
15845
15846
15847
15848
15849
15850
15851
15852
15853
15854
15855
15856
15857
15858
15859
15860
15861
15862
15863
15864
15865
15866
15867
15868
15869
15870
15871
15872
15873
15874
15875
15876
15877
15878
15879
15880
15881
15882
15883
15884
15885
15886
15887
15888
15889
15890
15891
15892
15893
15894
15895
15896
15897
15898
15899
15900
15901
15902
15903
15904
15905
15906
15907
15908
15909
15910
15911
15912
15913
15914
15915
15916
15917
15918
15919
15920
15921
15922
15923
15924
15925
15926
15927
15928
15929
15930
15931
15932
15933
15934
15935
15936
15937
15938
15939
15940
15941
15942
15943
15944
15945
15946
15947
15948
15949
15950
15951
15952
15953
15954
15955
15956
15957
15958
15959
15960
15961
15962
15963
15964
15965
15966
15967
15968
15969
15970
15971
15972
15973
15974
15975
15976
15977
15978
15979
15980
15981
15982
15983
15984
15985
15986
15987
15988
15989
15990
15991
15992
15993
15994
15995
15996
15997
15998
15999
16000
16001
16002
16003
16004
16005
16006
16007
16008
16009
16010
16011
16012
16013
16014
16015
16016
16017
16018
16019
16020
16021
16022
16023
16024
16025
16026
16027
16028
16029
16030
16031
16032
16033
16034
16035
16036
16037
16038
16039
16040
16041
16042
16043
16044
16045
16046
16047
16048
16049
16050
16051
16052
16053
16054
16055
16056
16057
16058
16059
16060
16061
16062
16063
16064
16065
16066
16067
16068
16069
16070
16071
16072
16073
16074
16075
16076
16077
16078
16079
16080
16081
16082
16083
16084
16085
16086
16087
16088
16089
16090
16091
16092
16093
16094
16095
16096
16097
16098
16099
16100
16101
16102
16103
16104
16105
16106
16107
16108
16109
16110
16111
16112
16113
16114
16115
16116
16117
16118
16119
16120
16121
16122
16123
16124
16125
16126
16127
16128
16129
16130
16131
16132
16133
16134
16135
16136
16137
16138
16139
16140
16141
16142
16143
16144
16145
16146
16147
16148
16149
16150
16151
16152
16153
16154
16155
16156
16157
16158
16159
16160
16161
16162
16163
16164
16165
16166
16167
16168
16169
16170
16171
16172
16173
16174
16175
16176
16177
16178
16179
16180
16181
16182
16183
16184
16185
16186
16187
16188
16189
16190
16191
16192
16193
16194
16195
16196
16197
16198
16199
16200
16201
16202
16203
16204
16205
16206
16207
16208
16209
16210
16211
16212
16213
16214
16215
16216
16217
16218
16219
16220
16221
16222
16223
16224
16225
16226
16227
16228
16229
16230
16231
16232
16233
16234
16235
16236
16237
16238
16239
16240
16241
16242
16243
16244
16245
16246
16247
16248
16249
16250
16251
16252
16253
16254
16255
16256
16257
16258
16259
16260
16261
16262
16263
16264
16265
16266
16267
16268
16269
16270
16271
16272
16273
16274
16275
16276
16277
16278
16279
16280
16281
16282
16283
16284
16285
16286
16287
16288
16289
16290
16291
16292
16293
16294
16295
16296
16297
16298
16299
16300
16301
16302
16303
16304
16305
16306
16307
16308
16309
16310
16311
16312
16313
16314
16315
16316
16317
16318
16319
16320
16321
16322
16323
16324
16325
16326
16327
16328
16329
16330
16331
16332
16333
16334
16335
16336
16337
16338
16339
16340
16341
16342
16343
16344
16345
16346
16347
16348
16349
16350
16351
16352
16353
16354
16355
16356
16357
16358
16359
16360
16361
16362
16363
16364
16365
16366
16367
16368
16369
16370
16371
16372
16373
16374
16375
16376
16377
16378
16379
16380
16381
16382
16383
16384
16385
16386
16387
16388
16389
16390
16391
16392
16393
16394
16395
16396
16397
16398
16399
16400
16401
16402
16403
16404
16405
16406
16407
16408
16409
16410
16411
16412
16413
16414
16415
16416
16417
16418
16419
16420
16421
16422
16423
16424
16425
16426
16427
16428
16429
16430
16431
16432
16433
16434
16435
16436
16437
16438
16439
16440
16441
16442
16443
16444
16445
16446
16447
16448
16449
16450
16451
16452
16453
16454
16455
16456
16457
16458
16459
16460
16461
16462
16463
16464
16465
16466
16467
16468
16469
16470
16471
16472
16473
16474
16475
16476
16477
16478
16479
16480
16481
16482
16483
16484
16485
16486
16487
16488
16489
16490
16491
16492
16493
16494
16495
16496
16497
16498
16499
16500
16501
16502
16503
16504
16505
16506
16507
16508
16509
16510
16511
16512
16513
16514
16515
16516
16517
16518
16519
16520
16521
16522
16523
16524
16525
16526
16527
16528
16529
16530
16531
16532
16533
16534
16535
16536
16537
16538
16539
16540
16541
16542
16543
16544
16545
16546
16547
16548
16549
16550
16551
16552
16553
16554
16555
16556
16557
16558
16559
16560
16561
16562
16563
16564
16565
16566
16567
16568
16569
16570
16571
16572
16573
16574
16575
16576
16577
16578
16579
16580
16581
16582
16583
16584
16585
16586
16587
16588
16589
16590
16591
16592
16593
16594
16595
16596
16597
16598
16599
16600
16601
16602
16603
16604
16605
16606
16607
16608
16609
16610
16611
16612
16613
16614
16615
16616
16617
16618
16619
16620
16621
16622
16623
16624
16625
16626
16627
16628
16629
16630
16631
16632
16633
16634
16635
16636
16637
16638
16639
16640
16641
16642
16643
16644
16645
16646
16647
16648
16649
16650
16651
16652
16653
16654
16655
16656
16657
16658
16659
16660
16661
16662
16663
16664
16665
16666
16667
16668
16669
16670
16671
16672
16673
16674
16675
16676
16677
16678
16679
16680
16681
16682
16683
16684
16685
16686
16687
16688
16689
16690
16691
16692
16693
16694
16695
16696
16697
16698
16699
16700
16701
16702
16703
16704
16705
16706
16707
16708
16709
16710
16711
16712
16713
16714
16715
16716
16717
16718
16719
16720
16721
16722
16723
16724
16725
16726
16727
16728
16729
16730
16731
16732
16733
16734
16735
16736
16737
16738
16739
16740
16741
16742
16743
16744
16745
16746
16747
16748
16749
16750
16751
16752
16753
16754
16755
16756
16757
16758
16759
16760
16761
16762
16763
16764
16765
16766
16767
16768
16769
16770
16771
16772
16773
16774
16775
16776
16777
16778
16779
16780
16781
16782
16783
16784
16785
16786
16787
16788
16789
16790
16791
16792
16793
16794
16795
16796
16797
16798
16799
16800
16801
16802
16803
16804
16805
16806
16807
16808
16809
16810
16811
16812
16813
16814
16815
16816
16817
16818
16819
16820
16821
16822
16823
16824
16825
16826
16827
16828
16829
16830
16831
16832
16833
16834
16835
16836
16837
16838
16839
16840
16841
16842
16843
16844
16845
16846
16847
16848
16849
16850
16851
16852
16853
16854
16855
16856
16857
16858
16859
16860
16861
16862
16863
16864
16865
16866
16867
16868
16869
16870
16871
16872
16873
16874
16875
16876
16877
16878
16879
16880
16881
16882
16883
16884
16885
16886
16887
16888
16889
16890
16891
16892
16893
16894
16895
16896
16897
16898
16899
16900
16901
16902
16903
16904
16905
16906
16907
16908
16909
16910
16911
16912
16913
16914
16915
16916
16917
16918
16919
16920
16921
16922
16923
16924
16925
16926
16927
16928
16929
16930
16931
16932
16933
16934
16935
16936
16937
16938
16939
16940
16941
16942
16943
16944
16945
16946
16947
16948
16949
16950
16951
16952
16953
16954
16955
16956
16957
16958
16959
16960
16961
16962
16963
16964
16965
16966
16967
16968
16969
16970
16971
16972
16973
16974
16975
16976
16977
16978
16979
16980
16981
16982
16983
16984
16985
16986
16987
16988
16989
16990
16991
16992
16993
16994
16995
16996
16997
16998
16999
17000
17001
17002
17003
17004
17005
17006
17007
17008
17009
17010
17011
17012
17013
17014
17015
17016
17017
17018
17019
17020
17021
17022
17023
17024
17025
17026
17027
17028
17029
17030
17031
17032
17033
17034
17035
17036
17037
17038
17039
17040
17041
17042
17043
17044
17045
17046
17047
17048
17049
17050
17051
17052
17053
17054
17055
17056
17057
17058
17059
17060
17061
17062
|
%global _empty_manifest_terminate_build 0
Name: python-Automunge
Version: 8.32
Release: 1
Summary: platform for preparing tabular data for machine learning
License: BSD License
URL: https://github.com/Automunge/AutoMunge
Source0: https://mirrors.nju.edu.cn/pypi/web/packages/d4/44/443527e8c214c82b0b449d1907a911c4acec9bb30c1ec175f450ccb02756/Automunge-8.32.tar.gz
BuildArch: noarch
Requires: python3-numpy
Requires: python3-pandas
Requires: python3-scikit-learn
Requires: python3-scipy
%description
# Automunge

#
## Table of Contents
* [Introduction](https://github.com/Automunge/AutoMunge#introduction)
* [Install, Initialize, and Basics](https://github.com/Automunge/AutoMunge#install-initialize-and-basics)
___
* [automunge(.)](https://github.com/Automunge/AutoMunge#automunge-1)
* [automunge(.) returned sets](https://github.com/Automunge/AutoMunge#automunge-returned-sets)
* [automunge(.) passed parameters](https://github.com/Automunge/AutoMunge#automunge-passed-parameters)
___
* [postmunge(.)](https://github.com/Automunge/AutoMunge#postmunge)
* [postmunge(.) returned sets](https://github.com/Automunge/AutoMunge#postmunge-returned-sets)
* [postmunge(.) passed parameters](https://github.com/Automunge/AutoMunge#postmunge-passed-parameters)
___
* [Default Transformations](https://github.com/Automunge/AutoMunge#default-transformations)
* [Library of Transformations](https://github.com/Automunge/AutoMunge#library-of-transformations)
* [Custom Transformation Functions](https://github.com/Automunge/AutoMunge#custom-transformation-functions)
* [Custom ML Infill Functions](https://github.com/Automunge/AutoMunge#custom-ml-infill-functions)
* [Final Model Training](https://github.com/Automunge/AutoMunge#final-model-training)
___
* [Conclusion](https://github.com/Automunge/AutoMunge#conclusion)
___
## Introduction
[Automunge](https://automunge.com) is an open source python library that has formalized and automated the data preparations for tabular learning in between the workflow boundaries of received “tidy data” (one column per feature and one row per sample) and returned dataframes suitable for the direct application of machine learning. Under automation numeric features are normalized, categoric features are binarized, and missing data is imputed. Data transformations are fit to properties of a training set for a consistent basis on any partitioned “validation data” or additional “test data”. When preparing training data, a compact python dictionary is returned recording the steps and parameters of transformation, which then may serve as a key for preparing additional data on a consistent basis.
> In other words, put simply:<br/>
> - **automunge(.)** prepares tabular data for machine learning with encodings, missing data infill, and may channel stochastic perturbations into features<br/>
> - **postmunge(.)** consistently prepares additional data very efficiently<br/>
>
> We make machine learning easy.
In addition to data preparations under automation, Automunge may also serve as a platform for engineering data pipelines. An extensive internal library of univariate transformations includes options like numeric translations, bin aggregations, date-time encodings, noise injections, categoric encodings, and even “parsed categoric encodings” in which categoric strings are vectorized based on shared grammatical structure between entries. Feature transformations may be mixed and matched in sets that include generations and branches of derivations by use of our “family tree primitives”. Feature transformations fit to properties of a training set may be custom defined from a very simple template for incorporation into a pipeline. Dimensionality reductions may be applied, such as by principal component analysis, feature importance rankings, or categoric consolidations. Missing data receives “ML infill”, in which models are trained for a feature to impute missing entries based on properties of the surrounding features. Random sampling may be channeled into features as stochastic perturbations.
Be sure to check out our [Tutorial Notebooks](https://github.com/Automunge/AutoMunge/tree/master/Tutorials). If you are looking for something to cite, our paper [Tabular Engineering with Automunge](https://datacentricai.org/papers/15_CameraReady_TabularEngineering_102621_Final.pdf) was accepted to the Data-Centric AI workshop at NeurIPS 2021.
## Install, Initialize, and Basics
Automunge is now available for pip install:
```
pip install Automunge
```
Or to upgrade:
```
pip install Automunge --upgrade
```
Once installed, run this in a local session to initialize:
```
from Automunge import *
am = AutoMunge()
```
Where e.g. for train set processing with default parameters run:
```
train, train_ID, labels, \
val, val_ID, val_labels, \
test, test_ID, test_labels, \
postprocess_dict = \
am.automunge(df_train)
```
Importantly, if the df_train set passed to automunge(.) includes a column
intended for use as labels, it should be designated with the labels_column
parameter.
Or for subsequent consistent processing of train or test data, using the
dictionary returned from original application of automunge(.), run:
```
test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict, df_test)
```
I find it helpful to pass these functions with the full range of arguments
included for reference, thus a user may simply copy and past this form.
```
#for automunge(.) function on original train and test data
train, train_ID, labels, \
val, val_ID, val_labels, \
test, test_ID, test_labels, \
postprocess_dict = \
am.automunge(df_train, df_test = False,
labels_column = False, trainID_column = False, testID_column = False,
valpercent=0.0, floatprecision = 32, cat_type = False, shuffletrain = True, noise_augment = 0,
dupl_rows = False, TrainLabelFreqLevel = False, powertransform = False, binstransform = False,
MLinfill = True, infilliterate=1, randomseed = False, eval_ratio = .5,
numbercategoryheuristic = 255, pandasoutput = 'dataframe', NArw_marker = True,
featureselection = False, featurethreshold = 0., inplace = False, orig_headers = False,
Binary = False, PCAn_components = False, PCAexcl = [], excl_suffix = False,
ML_cmnd = {'autoML_type':'randomforest',
'MLinfill_cmnd':{'RandomForestClassifier':{}, 'RandomForestRegressor':{}},
'PCA_type':'default',
'PCA_cmnd':{}},
assigncat = {'1010':[], 'onht':[], 'ordl':[], 'bnry':[], 'hash':[], 'hsh2':[],
'DP10':[], 'DPoh':[], 'DPod':[], 'DPbn':[], 'DPhs':[], 'DPh2':[],
'nmbr':[], 'mnmx':[], 'retn':[], 'DPnb':[], 'DPmm':[], 'DPrt':[],
'bins':[], 'pwr2':[], 'bnep':[], 'bsor':[], 'por2':[], 'bneo':[],
'ntgr':[], 'srch':[], 'or19':[], 'tlbn':[], 'excl':[], 'exc2':[]},
assignparam = {'global_assignparam' : {'(parameter)': 42},
'default_assignparam' : {'(category)' : {'(parameter)' : 42}},
'(category)' : {'(column)' : {'(parameter)' : 42}}},
assigninfill = {'stdrdinfill':[], 'MLinfill':[], 'zeroinfill':[], 'oneinfill':[],
'adjinfill':[], 'meaninfill':[], 'medianinfill':[], 'negzeroinfill':[],
'interpinfill':[], 'modeinfill':[], 'lcinfill':[], 'naninfill':[]},
assignnan = {'categories':{}, 'columns':{}, 'global':[]},
transformdict = {}, processdict = {}, evalcat = False, ppd_append = False,
entropy_seeds = False, random_generator = False, sampling_dict = False,
privacy_encode = False, encrypt_key = False, printstatus = 'summary', logger = {})
```
Please remember to save the automunge(.) returned object postprocess_dict
such as using pickle library, which can then be later passed to the postmunge(.)
function to consistently prepare subsequently available data.
```
#Sample pickle code:
#sample code to download postprocess_dict dictionary returned from automunge(.)
import pickle
with open('filename.pickle', 'wb') as handle:
pickle.dump(postprocess_dict, handle, protocol=pickle.HIGHEST_PROTOCOL)
#to upload for later use in postmunge(.) in another notebook
import pickle
with open('filename.pickle', 'rb') as handle:
postprocess_dict = pickle.load(handle)
#Please note that if you included externally initialized functions in an automunge(.) call
#like for custom_train transformation functions or customML inference functions
#they will need to be reinitialized prior to uploading the postprocess_dict with pickle.
```
We can then apply the postprocess_dict saved from a prior application of automunge
for consistent processing of additional data.
```
#for postmunge(.) function on additional available train or test data
#using the postprocess_dict object returned from original automunge(.) application
test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict, df_test,
testID_column = False,
pandasoutput = 'dataframe', printstatus = 'summary',
dupl_rows = False, TrainLabelFreqLevel = False,
featureeval = False, traindata = False, noise_augment = 0,
driftreport = False, inversion = False,
returnedsets = True, shuffletrain = False,
entropy_seeds = False, random_generator = False, sampling_dict = False,
randomseed = False, encrypt_key = False, logger = {})
```
The functions accept pandas dataframe or numpy array input and return encoded dataframes
with consistent order of columns between train and test data.
(For input numpy arrays any label column should be positioned as final column in set.)
The functions return data with categoric features translated to numerical encodings
and normalized numeric such as to make them suitable for direct application to a
machine learning model in the framework of a user's choice, including sets for
the various activities of a generic machine learning project such as training (train),
validation (val), and inference (test). The automunge(.) function also returns a
python dictionary (the "postprocess_dict") that can be used as a key to prepare additional
data with postmunge(.).
When left to automation, automunge(.) evaluates properties of a feature to select
the type of encoding, for example whether a column is numeric, categoric, high cardinality,
binary, date time, etc. Alternately, a user can
assign specific processing functions to distinct columns (via assigncat parameter) -
which may be pulled from the internal [Library of Transformations](https://github.com/Automunge/AutoMunge#library-of-transformations) or alternately [custom
defined](https://github.com/Automunge/AutoMunge#custom-transformation-functions).
The feature engineering transformations are recorded with suffixes
appended to the column header title in the returned sets, for one example the
application of z-score normalization returns a column with header origname + '\_nmbr'.
As another example, for binary encoded sets the set of columns are returned with
header origname + '\_1010_#' where # is integer to distinguish columns in same set.
In most cases, the suffix appenders are derived from the transformation category
identifier (which is by convention a 4 letter string).
The default transforms applied under automation are detailed below in section
[Default Transforms](https://github.com/Automunge/AutoMunge#default-transformations).
Missing data receives ML infill (defaulting to random forest models) and missing marker aggregation.
Other features of the library are detailed in the [tutorial notebooks](https://github.com/Automunge/AutoMunge/tree/master/Tutorials)
and with their associated parameters below.
Other options available in the library include feature importance (via featureselection parameter),
oversampling (via the TrainLabelFreqLevel parameter), dimensionality reductions (via PCAn_components, Binary, or featurethreshold parameters), and stochastic perturbations (by the DP family of transformations detailed in the library of transformations and tutorials). Further detail provided with parameter writeups below.
Note that there is a potential source of error if the returned column header
title strings, which will include suffix appenders based on transformations applied,
match any of the original column header titles passed to automunge. This is an edge
case not expected to occur in common practice and will return error message at
conclusion of printouts and a logged validation result as postprocess_dict['miscparameters_results']['suffixoverlap_aggregated_result']. This channel can
be eliminated by omitting the underscore character in received column headers.
Please note that we consider the postmunge(.) latency a key performance
metric since it is the function that may be called under repetition in production.
The automunge(.) latency can be improved by manual assignment of root categories with the assigncat parameter
or by deactivating ML infill with the MLinfill parameter.
## automunge(.)
The application of the automunge and postmunge functions requires the
assignment of the function to a series of named sets. We suggest using
consistent naming convention as follows:
```
#first you'll need to initialize
from Automunge import *
am = AutoMunge()
#then to run with default parameters
train, train_ID, labels, \
val, val_ID, val_labels, \
test, test_ID, test_labels, \
postprocess_dict = \
am.automunge(df_train)
```
The full set of parameters available to be passed are given here, with
explanations provided below:
```
#first you'll need to initialize
from Automunge import *
am = AutoMunge()
#then if you want you can copy paste following to view all of parameter options
#where df_train is the target training data set to be prepared
train, train_ID, labels, \
val, val_ID, val_labels, \
test, test_ID, test_labels, \
postprocess_dict = \
am.automunge(df_train, df_test = False,
labels_column = False, trainID_column = False, testID_column = False,
valpercent=0.0, floatprecision = 32, cat_type = False, shuffletrain = True, noise_augment = 0,
dupl_rows = False, TrainLabelFreqLevel = False, powertransform = False, binstransform = False,
MLinfill = True, infilliterate=1, randomseed = False, eval_ratio = .5,
numbercategoryheuristic = 255, pandasoutput = 'dataframe', NArw_marker = True,
featureselection = False, featurethreshold = 0., inplace = False, orig_headers = False,
Binary = False, PCAn_components = False, PCAexcl = [], excl_suffix = False,
ML_cmnd = {'autoML_type':'randomforest',
'MLinfill_cmnd':{'RandomForestClassifier':{}, 'RandomForestRegressor':{}},
'PCA_type':'default',
'PCA_cmnd':{}},
assigncat = {'1010':[], 'onht':[], 'ordl':[], 'bnry':[], 'hash':[], 'hsh2':[],
'DP10':[], 'DPoh':[], 'DPod':[], 'DPbn':[], 'DPhs':[], 'DPh2':[],
'nmbr':[], 'mnmx':[], 'retn':[], 'DPnb':[], 'DPmm':[], 'DPrt':[],
'bins':[], 'pwr2':[], 'bnep':[], 'bsor':[], 'por2':[], 'bneo':[],
'ntgr':[], 'srch':[], 'or19':[], 'tlbn':[], 'excl':[], 'exc2':[]},
assignparam = {'global_assignparam' : {'(parameter)': 42},
'default_assignparam' : {'(category)' : {'(parameter)' : 42}},
'(category)' : {'(column)' : {'(parameter)' : 42}}},
assigninfill = {'stdrdinfill':[], 'MLinfill':[], 'zeroinfill':[], 'oneinfill':[],
'adjinfill':[], 'meaninfill':[], 'medianinfill':[],
'interpinfill':[], 'modeinfill':[], 'lcinfill':[], 'naninfill':[]},
assignnan = {'categories':{}, 'columns':{}, 'global':[]},
transformdict = {}, processdict = {}, evalcat = False, ppd_append = False,
entropy_seeds = False, random_generator = False, sampling_dict = False,
privacy_encode = False, encrypt_key = False, printstatus = 'summary', logger = {})
```
Or for the postmunge function:
```
#for postmunge(.) function on additional or subsequently available test (or train) data
#using the postprocess_dict object returned from original automunge(.) application
#first you'll need to initialize
from Automunge import *
am = AutoMunge()
#then to run with default parameters
test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict, df_test)
```
With the full set of arguments available to be passed as:
```
#first you'll need to initialize
from Automunge import *
am = AutoMunge()
#then if you want you can copy paste following to view all of parameter options
#here postprocess_dict was returned from corresponding automunge(.) call
#and df_test is the target data set to be prepared
test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict, df_test,
testID_column = False,
pandasoutput = 'dataframe', printstatus = 'summary', inplace = False,
dupl_rows = False, TrainLabelFreqLevel = False,
featureeval = False, traindata = False, noise_augment = 0,
driftreport = False, inversion = False,
returnedsets = True, shuffletrain = False,
entropy_seeds = False, random_generator = False, sampling_dict = False,
randomseed = False, encrypt_key = False, logger = {})
```
Note that the only required argument to the automunge function is the
train set dataframe, the other arguments all have default values if
nothing is passed. The postmunge function requires as minimum the
postprocess_dict object (a python dictionary returned from the application of
automunge) and a dataframe test set consistently formatted as those sets
that were originally applied to automunge.
...
Here now are descriptions for the returned sets from automunge, which
will be followed by descriptions of the parameters which can be passed to
the function, followed by similar treatment for postmunge returned sets
and arguments. Further below is documentation for the library of transformations.
...
## automunge(.) returned sets:
Automunge defaults to returning data sets as pandas dataframes, or for
single column sets as pandas series.
For dataframes, data types of returned columns are based on the transformation applied,
for example columns with boolean integers are cast as int8, ordinal encoded
columns are given a conditional type based on the size of encoding space as either
uint8, uint16, or uint32. Continuous sets are cast as float16, float32, or float64
based on the automunge(.) floatprecision parameter. And direct passthrough columns
via excl transform retain the received data type.
* train: a numerically encoded set of data intended to be used to train a
downstream machine learning model in the framework of a user's choice
* train_ID: the set of ID values corresponding to the train set if a ID
column(s) was passed to the function. This set may be useful if the shuffle
option was applied. Note that an ID column may serve multiple purposes such
as row identifiers or for pairing tabular data rows with a corresponding
image file for instance. Also included in this set is a derived column
titled 'Automunge_index', this column serves as an index identifier for order
of rows as they were received in passed data, such as may be beneficial
when data is shuffled. If the received df_train had a non-ranged integer index,
it is extracted and returned in this set. For more information please refer to writeup for the
trainID_column parameter.
* labels: a set of numerically encoded labels corresponding to the
train set if a label column was passed. Note that the function
assumes the label column is originally included in the train set. Note
that if the labels set is a single column a returned dataframe is flattened
to a pandas Series or a returned Numpy array is also
flattened (e.g. [[1,2,3]] converted to [1,2,3] ).
* val: a set of training data carved out from the train set
that is intended for use in hyperparameter tuning of a downstream model.
* val_ID: the set of ID values corresponding to the val
set. Comparable to columns returned in train_ID.
* val_labels: the set of labels corresponding to the val
set
* test: the set of features, consistently encoded and normalized as the
training data, that can be used to generate predictions from a
downstream model trained with train. Note that if no test data is
available during initial address this processing will take place in the
postmunge(.) function.
* test_ID: the set of ID values corresponding to the test set. Comparable
to columns returned in train_ID unless otherwise specified. For more
information please refer to writeup for the testID_column parameter.
* test_labels: a set of numerically encoded labels corresponding to the
test set if a label column was passed.
* postprocess_dict: a returned python dictionary that includes
normalization parameters and trained ML infill models used to
generate consistent processing of additional train or test data such as
may not have been available at initial application of automunge. It is
recommended that this dictionary be externally saved on each application
used to train a downstream model so that it may be passed to postmunge(.)
to consistently process subsequently available test data, such as
demonstrated with the pickle library above.
A few useful entries in the postprocess_dict include:
- postprocess_dict['finalcolumns_train']: list of returned column headers for train set including suffix appenders
- postprocess_dict['columntype_report']: a report classifying the returned column types, including lists of all categoric and all numeric returned columns
- postprocess_dict['column_map']: a report mapping the input columns to their associated returned columns (excluding those consolidated as part of a dimensionality reduction). May be useful to inspect sets returned for a specific feature e.g. train[postprocess_dict['column_map']['input_column_header']]
- postprocess_dict['FS_sorted]: sorted results of feature importance evaluation if elected
- postprocess_dict['miscparameters_results']: reporting results of validation tests performed on parameters and passed data
...
## automunge(.) passed parameters
```
train, train_ID, labels, \
val, val_ID, val_labels, \
test, test_ID, test_labels, \
postprocess_dict = \
am.automunge(df_train, df_test = False,
labels_column = False, trainID_column = False, testID_column = False,
valpercent=0.0, floatprecision = 32, cat_type = False, shuffletrain = True, noise_augment = 0,
dupl_rows = False, TrainLabelFreqLevel = False, powertransform = False, binstransform = False,
MLinfill = True, infilliterate=1, randomseed = False, eval_ratio = .5,
numbercategoryheuristic = 255, pandasoutput = 'dataframe', NArw_marker = True,
featureselection = False, featurethreshold = 0., inplace = False, orig_headers = False,
Binary = False, PCAn_components = False, PCAexcl = [], excl_suffix = False,
ML_cmnd = {'autoML_type':'randomforest',
'MLinfill_cmnd':{'RandomForestClassifier':{}, 'RandomForestRegressor':{}},
'PCA_type':'default',
'PCA_cmnd':{}},
assigncat = {'1010':[], 'onht':[], 'ordl':[], 'bnry':[], 'hash':[], 'hsh2':[],
'DP10':[], 'DPoh':[], 'DPod':[], 'DPbn':[], 'DPhs':[], 'DPh2':[],
'nmbr':[], 'mnmx':[], 'retn':[], 'DPnb':[], 'DPmm':[], 'DPrt':[],
'bins':[], 'pwr2':[], 'bnep':[], 'bsor':[], 'por2':[], 'bneo':[],
'ntgr':[], 'srch':[], 'or19':[], 'tlbn':[], 'excl':[], 'exc2':[]},
assignparam = {'global_assignparam' : {'(parameter)': 42},
'default_assignparam' : {'(category)' : {'(parameter)' : 42}},
'(category)' : {'(column)' : {'(parameter)' : 42}}},
assigninfill = {'stdrdinfill':[], 'MLinfill':[], 'zeroinfill':[], 'oneinfill':[],
'adjinfill':[], 'meaninfill':[], 'medianinfill':[], 'negzeroinfill':[],
'interpinfill':[], 'modeinfill':[], 'lcinfill':[], 'naninfill':[]},
assignnan = {'categories':{}, 'columns':{}, 'global':[]},
transformdict = {}, processdict = {}, evalcat = False, ppd_append = False,
entropy_seeds = False, random_generator = False, sampling_dict = False,
privacy_encode = False, encrypt_key = False, printstatus = 'summary', logger = {})
```
* df_train: a pandas dataframe or numpy array containing a structured
dataset intended for use to subsequently train a machine learning model.
The set at a minimum should be 'tidy' meaning a single column per feature
and a single row per observation, with all unique string column headers. If
desired the set may include one are more
"ID" columns (intended to be carved out and consistently shuffled or partitioned
such as an index column) and zero or one column intended to be used as labels
for a downstream training operation. The tool supports the inclusion of
non-index-range column as index or multicolumn index (requires named index
columns). Such index types are added to the returned "ID" sets which are
consistently shuffled and partitioned as the train and test sets. For passed
numpy array any label column should be the final column.
* df_test: a pandas dataframe or numpy array containing a structured
dataset intended for use to generate predictions from a downstream machine
learning model trained from the automunge returned sets. The set must be
consistently formatted as the train set with consistent column headers and
order of columns. (This set may optionally contain a labels column if one
was included in the train set although its inclusion is not required). If
desired the set may include one or more ID column(s) or column(s) intended
for use as labels. A user may pass False if this set is not available. The tool
supports the inclusion of non-index-range column as index or multicolumn index
(requires named index columns). Such index types are added to the returned
"ID" sets which are consistently shuffled and partitioned as the train and
test sets.
* labels_column: a string of the column title for the column from the
df_train set intended for use as labels in training a downstream machine
learning model. The function defaults to False for cases where the
train set does not include a label column. An integer column index may
also be passed such as if the source dataset was a numpy array. A user can
also pass True in which case the label set will be taken from the final
column of the train set (including cases of single column in train set).
A label column for df_train data is partitioned and returned in the labels set.
Note that a designated labels column will automatically be checked for in
corresponding df_test data and partitioned to the returned test_labels set when
included. Note that labels_column can also be passed as a list of multiple
label columns. Note that when labels_column is passed as a list, a first entry
set bracket specification comparable to as available for the Binary parameter
can be applied to designate that multiple categoric labels in the list may be consolidated to a
single categoric label, such as to train a single classification model for multiple classification targets,
which form may then be recovered in a postmunge inversion='labels' operation, such as to convert the
consolidated form after an inference operation back to the form of separate inferred labels.
When passing data as numpy arrays the label column needs to be the final column (on far right of dataframe).
* trainID_column: defaults to False, user can pass a column header or list of column headers
for columns that are to be segregated from the df_train set for return in the train_ID
set (consistently shuffled and partitioned when applicable). For example this may
be desired for an index column or any other column that the user wishes to exclude from
the ML infill basis. Defaults to False for cases where no ID columns are desired. Note
that when designating ID columns for df_train if that set of ID columns is present in df_test
they will automatically be given comparable treatment unless otherwise specified. An integer
column index or list of integer column indexes may also be passed such as if the source dataset
was a numpy array. Note that the returned ID sets (such as train_ID, val_ID, and test_ID) are automatically
populated with an additional column with header 'Automunge_index' which may serve as an
index column in cases of shuffling, validation partitioning, or oversampling. In cases of unnamed
non-range integer indexes, they are automatically extracted and returned in the ID sets as 'Orig_index'.
If a user would like to include a column both in the features for encoding and the ID sets for original form
retention, they can pass trainID_column as a list of two lists, e.g. [list1, list2], where the first
list may include ID columns to be struck from the features and the second list may include ID columns
to be retained in the features.
* testID_column: defaults to False, user can pass a column header or list of column headers
for columns that are to be segregated from the df_test set for return in the test_ID
set (consistently shuffled and partitioned when applicable). For example this may
be desired for an index column or any other column that the user wishes to exclude from
the ML infill basis. Defaults to False, which can be used for cases where the df_test
set does not contain any ID columns, or may also be passed as the default of False when
the df_test ID columns match those passed in the trainID_column parameter,
in which case they are automatically given comparable treatment. Thus, the primary intended use
of the testID_column parameter is for cases where a df_test has ID columns
different from those passed with df_train. Note that an integer column index
or list of integer column indexes may also be passed such as if the source dataset was a numpy array.
(When passing data as numpy arrays one should match ID partitioning between df_test and df_train.) In cases of unnamed
non-range integer indexes, they are automatically extracted and returned in the ID sets as 'Orig_index'.
If a user would like to include a column both in the features for encoding and the ID sets for original form
retention, they can pass testID_column as a list of two lists, e.g. [list1, list2], where the first
list may include ID columns to be struck from the features and the second list may include ID columns
to be retained in the features. (We recommend only using testID_column specification for cases where df_test
includes columns that aren't present in df_train, otehrwise it is automatic.)
* valpercent: a float value between 0 and 1 which designates the percent
of the training data which will be set aside for the validation
set (generally used for hyperparameter tuning of a downstream model).
This value defaults to 0 for no validation set returned. Note that when
shuffletrain parameter is activated (which is default for train sets) validation
sets will contain random rows. If shuffletrain parameter is set to False then any
validation set will be pulled from the bottom sequential rows of the df_train dataframe.
valpercent can also be passed as a two entry tuple in the form valpercent=(start, end),
where start is a float in the range 0<=start<1, end is a float in the range 0<end<=1, and start < end.
For example, if specified as valpercent=(0.2, 0.4), the returned training data would consist of the first 20% of rows and the last 60% of rows, while the validation set would consist of the remaining rows, and
where the train and validation sets may then be subsequently individually shuffled when activated by the shuffletrain parameter. The purpose of this valpercent tuple option is to support integration into a cross validation operation, for example for a cross validation with k=3, automunge(.) could be called three times with valpercent passed for each as (0,0.33), (0.33,0.66), (0.66,1) respectively. Please note that when using automunge(.) in a cross-validation operation, we recommend using the postprocess_dict['final_assigncat'] entry populated in the first automunge(.) call associated with the first train/validation split as the assigncat entry passed to the automunge(.) assigncat parameter in each subsequent automunge(.) call associated with the remaining train/validation splits, which will speed up the remaining calls by eliminating the automated evaluation of data properties as well as mitigate risk of (remote) edge case when category assignment to a column under automation may differ between different validation set partitions due to deviations in aggregate data properties associated with a column.
```
#example of preparing k folds in a cross validation:
k=3
for i in range(k):
print('processing fold #', i)
#valpercent accepts a tuple of float ratios to set boundaries of validation split
valpercent = (i/k, (i+1)/k)
if i == 0:
#can also populate any manual assignments here
assigncat = {}
elif i > 0:
#after first fold use the final assigncat from prior
#to turn off automated category assignments
#which will speed it up and eliminate an edge case
assigncat = postprocess_dict['final_assigncat']
train, train_ID, labels, \
val, val_ID, val_labels, \
test, test_ID, test_labels, \
postprocess_dict = \
am.automunge(df_train,
labels_column = labels_column,
valpercent = valpercent,
assigncat = assigncat)
#train and evaluate model with train/labels and val/val_labels
#note that in edge case number of columns may vary between folds
#which could arrise from e.g. 1010 binarization exposed to different range of entries in a feature
#if this becomes an obstacle can manually specify the range of activation targets in assignparam
#e.g. assignparam = {'1010' : {'<targetfeature>' : {'all_activations' : list_of_unique_values_for_targetfeature}}}
#or by just manually specifying ordinal encoding to categoric features in assigncat
#e.g. assigncat = {'ordl' : list_of_categoric_features}
#it is also possible to process folds for i>0 with train and validation data prepared seperately in postmunge
#this would run faster e.g. by eliminating redundant ML infill model training
#and ensure that each fold has same number of columns
#albeit with tradeoff of not strictly adhering to segregation of train/validation basis
#for avoidance of data leakage
```
* floatprecision: an integer with acceptable values of _16/32/64_ designating
the memory precision for returned float values. (A tradeoff between memory
usage and floating point precision, smaller for smaller footprint.)
This currently defaults to 32 for 32-bit precision of float values. Note
that there may be energy efficiency benefits at scale to basing this to 16.
Note that integer data types are still retained with this option.
* cat_type: accepts boolean defaulting to False, when True returned integer encoded categoric
features are converted to pandas categorical data type based on the transform's MLinfill_type.
In some cases this may actually slightly increase dataframe memory usage and
is redundant with information stored in the postprocess_dict, however we expect there
are potential downstream workflows where a user may prefer categoric data type which
is the reason for the option. Note that for cases where a categoric transform feature
did not have full representation in the training data set (e.g. as could be the case for fixed width bins with bnwd/bnwo/variants),
it is possible that this option will result in test data returned with missing values designated
as NaN entries (which is partly why this is not the default). Note that this same basis is carried through to postmunge.
* shuffletrain: can be passed as one of _{True, False, 'traintest'}_ which
indicates if the returned sets will have their rows shuffled. Defaults to True
for shuffling the train data but not the test data. False deactivates. To shuffle
both train and test data can pass as 'traintest'. Note that this impacts the
validation split if a valpercent was passed, where under the default of True
validation data will be randomly sampled and shuffled, or when shuffletrain is
deactivated validation data will be based on a partition of sequential rows from
the bottom of the train set. Note that row correspondence with shuffling is
maintained between train / ID / label sets. Note that we recommend deactivating
shuffletrain for sequential (time-series) data.
* noise_augment: accepts type int or float(int) >=0, defaults to 0. Used to specify
a count of additional duplicates of training data prepared and concatenated with the
original train set. Intended for use in conjunction with noise injection, such that
the increased size of training corpus can be a form of data augmentation. (Noise injection
still needs to be assigned, e.g. by assigning root categories in assigncat or could
turn on automated noise with powertransform = 'DP1'). Note that
injected noise will be uniquely randomly sampled with each duplicate. When noise_augment
is received as a dtype of int, one of the duplicates will be prepared without noise. When
noise_augment is received as a dtype of float(int), all of the duplicates will be prepared
with noise. When shuffletrain is activated the duplicates are collectively shuffled, and can distinguish
between duplicates by the original df_train.shape in comparison to the ID set's Automunge_index.
Please be aware that with large dataframes a large duplicate count may run into memory constraints,
in which case additional duplicates can be prepared separately in postmunge(.). Note that the entropy seed budget only accounts for preparing one set of data, for the noise_augment option with entropy seeding we recommend passing a custom extra_seed_generator with a sampling_type specification, which will result in internal samplings of additional entropy seeds for each additional noise_augment duplicate (or for the bulk_seeds case with external sampling can increase entropy_seed budget proportional to the number of additional duplicates with noise).
* dupl_rows: can be passed as _(True/False/'traintest'/'test')_ which indicates
if duplicate rows will be consolidated to single instance in returned sets. (In
other words, if same row included more than once, it will only be returned once.)
Defaults to False for not activated. True applies consolidation to train set only,
'test' applies consolidation to test set only, 'traintest' applies consolidation
to both train and test sets separately. Note this is applied prior to
TrainLabelFreqLevel if elected. As implemented this does not take into account
duplicate rows in train/test data which have different labels, only one version
of features/label pair is returned.
* TrainLabelFreqLevel: can be passed as _(True/False/'traintest'/'test')_
which indicates if the TrainLabelFreqLevel method will be applied to prepare for
oversampling training data associated with underrepresented labels (aka class
imbalance). The method adds multiples of training data rows for those labels with
lower frequency resulting in an (approximately) levelized frequency. This defaults
to False. Note that this feature may be applied to numerical label sets if
the processing applied to the set includes aggregated bins, such as for example
by passing a label column to the 'exc3' category in assigncat for pass-through
force to numeric with inclusion of standard deviation bins or to 'exc4' for
inclusion of powers of ten bins. For cases where labels are included in the
test set, this may also be passed as _'traintest'_ to apply levelizing to both
train and test sets or be passed as _'test'_ to only apply levelizing to test set.
(If a label set includes multiple configurations of the labels, the levelizing
will be based on the first categoric / binned set (either one-hot or ordinal)
based on order of columns.) For more on the class imbalance problem see "A
systematic study of the class imbalance problem in convolutional neural
networks" - Buda, Maki, Mazurowski.
* powertransform: _(False/True/'excl'/'exc2'/'infill'/'infill2'/'DP1'/'DP2'/'DT1'/'DT2'/'DB1'/'DB2')_, defaults to False.
The powertransform parameter is used to select between options for derived
category assignments under automation based on received feature set properties.
- Under the default scenario, category assignments under automation are consistent with section
[Default Transformations](https://github.com/Automunge/AutoMunge#default-transformations).
- Under the True scenario, an evaluation will be performed of distribution properties to select between
box-cox (bxcx), z-score (nmbr), min-max scaling (mnmx), or mean absolute deviation scaling (MAD3) normalization
of numerical data. Please note that under automation label columns do not receive this treatment, if desired they can be assigned to category ptfm in assigncat.
- Under the 'excl' scenario, columns not explicitly assigned in assigncat are subject to excl transform
for full pass-through, including data type retention and exclusion from ML infill basis.
- Under the 'exc2' scenario, columns not explicitly assigned in assigncat are subject to exc2 transform
for pass-through with force to numeric and adjinfill, and included in ML infill basis.
- The 'infill' scenario may be used when data is already numerically encoded and user just desires
ML infill without transformations. 'infill' treats sets with any non-integer
floats with exc2 (pass-through numeric), integer sets with any negative entries or unique ratio >0.75 with exc8
(for pass-through continuous integer sets subject to ml infill regression), and otherwise
integer sets with exc5 (pass-through integer subject to ml infill classification). Of course the rule of treating
integer sets with >0.75 ratio of unique entries as targets for ML infill regression or otherwise
for classification is an imperfect heuristic. If some particular
feature set has integers intended for regression below this threshold, the defaults under
automation can be overwritten to a specific column with the assigncat parameter, such as to
assign the column to exc8 instead of exc5. Note that 'infill'
includes support for NArw aggregation with NArw_marker parameter.
- The 'infill2' scenario is similar to the 'infill' scenario, with added allowance for inclusion of
non-numeric sets, which are given an excl pass-through and excluded from ML infill basis. (May return sets not suitable for direct application of ML.)
DP1 and DP2 are used for defaulting to noise injection for numeric and (non-hashed) categoric
- 'DP1' is similar to the defaults but default numerical replaced with DPnb, categoric with DP10, binary with DPbn, hash with DPhs, hsh2 with DPh2 (labels do not receive noise in this configuration)
- 'DP2' is similar to the defaults but default numerical replaced with DPrt, categoric with DPod, binary with DPbn, hash with DPhs, hsh2 with DPh2 (labels do not receive noise in this configuration)
- 'DT1'/'DT2' are comparable to 'DP1'/'DP2' but inject noise to just test data instead of just train data
- 'DB1'/'DB2' are comparable to 'DP1'/'DP2' but inject noise to both train and test data instead of just train data
* binstransform: a boolean identifier _(True/False)_ which indicates if all
default numerical sets will receive bin processing such as to generate child
columns with boolean identifiers for number of standard deviations from
the mean, with groups for values <-2, -2-1, -10, 01, 12, and >2. This value
defaults to False.
* MLinfill: a boolean identifier _(True/False)_ defaulting to True which indicates if the ML
infill method will be applied (to columns not otherwise designated in assigninfill) to predict infill for missing
or improperly formatted data using machine learning models trained on the
rest of the df\_train set. ML infill may alternatively
be assigned to distinct columns in assigninfill when MLinfill passed as False. Note that even if sets passed
to automunge(.) have no points needing infill, when activated ML infill models will still be trained for potential use
to subsequent data passed through postmunge(.). ML infill
by default applies scikit-learn random forest machine learning models to predict infill,
which may be changed to other available auto ML frameworks via the ML_cmnd parameter.
Parameters and tuning may also be passed to the model training as demonstrated
with ML_cmnd parameter below. Order of infill model training is based on a
reverse sorting of columns by count of missing entries in the df_train set.
(As a helpful hint, if data is already numerically encoded and just want to perform
ML infill without preprocessing transformations, can pass in conjunction parameter
powertransform = 'infill')
To bidirectionally exclude particular features from each other's imputation model bases
(such as may be desired in expectation of data leakage), a user can designate via
entries to ML_cmnd['leakage_sets'], documented further below with ML_cmnd parameter.
Or to unidirectionally exclude features from another's basis, a user can designate
via entries to ML_cmnd['leakage_dict'], also documented below. To exclude a feature from
all ML infill and PCA basis, can pass as entries to a list in ML_cmnd['full_exclude'].
Please note that columns returned from transforms with MLinfilltype 'totalexclude' (such as
for the excl passthrough transform) are automatically excluded from ML infill basis.
Please note that an assessment is performed to evaluate for cases of a kind of data
leakage across features associated with correlated presence of missing data
across rows for exclusion, documented further below with ML_cmnd parameter. This assessment
can be deactivated by passing ML_cmnd['leakage_tolerance'] = False.
Please note that for incorporating stochastic injections into the derived imputations, an
option is on by default which is further documented below in the ML_cmnd entries for 'stochastic_impute_categoric'
and 'stochastic_impute_numeric'. Please note that by default the random seed passed to model
training is stochastic between applications, as further documented below in the ML_cmnd entry for
'stochastic_training_seed'.
Further detail on ML infill provided in the paper [Missing Data Infill with Automunge](https://medium.com/automunge/missing-data-infill-with-automunge-ec94d6b13433).
* infilliterate: an integer indicating how many applications of the ML
infill processing are to be performed for purposes of predicting infill.
The assumption is that for sets with high frequency of missing values
that multiple applications of ML infill may improve accuracy although
note this is not an extensively tested hypothesis. This defaults to 1.
Note that due to the sequence of model training / application, a comparable
set prepared in automunge and postmunge with this option may vary slightly in
output (as automunge(.) will train separate models on each iteration and
postmunge will just apply the final model on each iteration).
Please note that early stopping is available for infilliterate based on a comparison
on imputations of a current iteration to the preceding, with a halt when reaching both
of tolerances associated with numeric features in aggregate and categoric
features in aggregate.
Early stopping evaluation can be activated by passing to ML_cmnd
ML_cmnd['halt_iterate']=True. The tolerances can be updated from the shown defaults
as ML_cmnd['categoric_tol']=0.05 and ML_cmnd['numeric_tol']=0.03. Further detail
on early stopping criteria is that the numeric halting criteria is based on comparing
for each numeric feature the ratio of mean(abs(delta)) between imputation iterations to
the mean(abs(entries)) of the current iteration, which are then weighted between features
by the quantity of imputations associated with each feature and compared to a numeric
tolerance value, and the categoric halting criteria is based on comparing the ratio of
number of inequal imputations between iterations to the total number of imputations across
categoric features to a categoric tolerance value. Early stopping is applied as soon as
the tolerances are met for both numeric and categoric features. If early stopping criteria
is not reached the specified infilliterate will serve as the maximum number of iterations.
(Be aware that stochastic noise from stochastic_impute_numeric
and stochastic_impute_categoric has potential to interfere with early stopping criteria.
Each of these can be deactivated in ML_cmnd if desired.)
* randomseed: defaults as False, also accepts integers within 0:2\*\*31-1. When not specified,
randomseed is based on a uniform randomly sampled integer within that range using an entropy_seeds when available.
Can be manually specified such as for repeatable data set shuffling, feature importance, and other algorithms.
Although ML infill by default samples a new random seed with each model training, to apply this random seed
to all model training operations can set a ML_cmnd entry as ML_cmnd['stochastic_training_seed']=False.
* eval_ratio: a 0-1 float or integer for number of rows, defaults to 0.5, serves
to reduce the overhead of the category evaluation functions under automation by only
evaluating this sampled ratio of rows instead from the full set. Makes automunge faster.
To accommodate small data sets, the convention is that eval_ratio is only applied
when training set has > 2,000 rows.
* numbercategoryheuristic: an integer used as a heuristic. When a
categorical set has more unique values than this heuristic, it defaults
to categorical treatment via hashing processing via 'hsh2', otherwise
categorical sets default to binary encoding via '1010'. This defaults to 255.
Heuristic can be deactivated by passing as False.
* pandasoutput: selects format of returned sets. Defaults to _'dataframe'_
for returned pandas dataframe for all sets. Dataframes index is not always preserved, non-integer indexes are extracted to the ID sets,
and automunge(.) generates an application specific range integer index in ID sets
corresponding to the order of rows as they were passed to function). If set to _True_, features and ID sets are comparable, and single column label sets are converted to Pandas Series instead of dataframe. If set to _False_
returns numpy arrays instead of dataframes. Note that the dataframes will have column
specific data types, or returned numpy arrays will have a single data type.
* NArw_marker: a boolean identifier _(True/False)_ which indicates if the
returned sets will include columns with markers for source column entries subject to
infill (columns with suffix '\_NArw'). This value defaults to True. Note
that the properties of cells qualifying as candidate for infill are based
on the 'NArowtype' of the root category of transformations associated with
the column, see Library of Transformations section below for catalog, the
various NArowtype options (such as justNaN, numeric, positivenumeric, etc)
are also further clarified below in discussion around the processdict parameter.
* featureselection: applied to activate a feature importance evaluation.
Defaults to False, accepts {False, True, 'pct', 'metric', 'report'}.
If selected automunge will return a summary of feature importance findings in the featureimportance
returned dictionary. False turns off, True turns on, 'pct' performs the evaluation followed by
a dimensionality reduction based on the featurethreshold parameter to retain a % of top features.
'metric' performs the evaluation followed by a dimensionality reduction to retain features above a metric value based on featurethreshold parameter. 'report' performs the evaluation and returns a report with no
further processing of data. Feature importance evaluation requires the inclusion of a
designated label column in the train set. Note that sorted
feature importance results are returned in postprocess_dict['FS_sorted'],
including columns sorted by metric and metric2. Note that feature importance
model training inspects same ML_cmnd parameters as ML infill. (Note that any user-specified size of validationratios
if passed are used in this method, otherwise defaults to 0.2.) Note that as currently implemented
feature selection does not take into account dimensionality reductions (like PCA or Binary).
Permutation importance method was inspired by a fast.ai lecture and more information can be found in
the paper "Beware Default Random Forest Importances" by Terrence Parr, Kerem
Turgutlu, Christopher Csiszar, and Jeremy Howard. This method currently makes
use of Scikit-Learn's Random Forest predictors.
* featurethreshold: defaults to 0., accepts float in range of 0-1. Inspected when
featureselection passed as 'pct' or 'metric'. Used to designate the threshold for feature
importance dimensionality reduction. Where e.g. for 'pct' 0.9 would retain 90% of top
features, or e.g. for 'metric' 0.03 would retain features whose metric was >0.03. Note that
NArw columns are only retained for those sets corresponding to columns that "made the cut".
* inplace: defaults to False, when True the df_train (and df_test) passed to automunge(.)
are overwritten with the returned train and test sets. This reduces memory overhead.
For example, to take advantage with reduced memory overhead you could call automunge(.) as:
```
df_train, train_ID, labels, \
val, val_ID, val_labels, \
df_test, test_ID, test_labels, \
postprocess_dict = \
am.automunge(df_train, df_test=df_test, inplace=True)
```
Note that this "inplace" option is not to be confused with the default inplace conduction of transforms
that may impact grouping coherence of columns derived from same feature.
That other inplace option can be deactivated in assignparam, as may be desired for grouping coherence.
Note that all custom_train transforms have built in support for optional deactivating of inplace parameter
through assignparam which is applied external to function call. Further detail on this other inplace
option is provided in the essay [Automunge Inplace](https://medium.com/automunge/automunge-inplace-a85766404bb7).
```
assignparam = {'global_assignparam' : {'inplace' : False}}
```
* Binary: a dimensionality reduction technique whereby the set of columns from
categoric encodings are collectively encoded with binary encoding such
as may reduce the column count. This has many benefits such as
memory bandwidth and energy cost for inference I suspect, however, there
may be tradeoffs associated with ability of the model to handle outliers,
as for any new combination of boolean set in the test data the collection
will be subject to zeroinfill.
Defaults to _False_, can be passed as one of
_{False, True, 'retain', 'ordinal', 'ordinalretain', 'onehot', 'onehotretain', [list of column headers]}_.
- False: the default, Binary dimensionality reduction not performed
- True: consolidates Boolean integer sets into a single common binarization encoding with replacement
- 'retain': comparable to True, but original columns are retained instead of replaced
- 'ordinal': comparable to True, but consolidates into an ordinal encoding instead of binarization
- 'ordinalretain': comparable to 'ordinal', but original columns are retained instead of replaced
- 'onehot': comparable to True, but consolidates into a one hot encoding instead of binarization
- 'ordinalretain': comparable to 'onehot', but original columns are retained instead of replaced
A user can also pass a list of target column headers if consolidation is only desired on
a subset of the categoric features. The column headers may be as received column headers or returned column headers with suffix appenders included. To allow distinguishing between the other conventions
such as 'retain', 'ordinal', etc. in conjunction with passing a subset list of column headers,
a user may optionally include the specification embedded in set brackets {} as the first entry to the list, e.g. [{'ordinal'}, 'targetcolumn', ...], where specification may be one of
True, 'retain', 'ordinal', etc. Otherwise when the first value in list is just a column
header string the binarization convention consistent with Binary=True is applied.
In order to separately consolidate multiple sets of categoric features, one
can pass Binary as a list of lists, with the sub lists matching criteria noted preceding (such as allowance for first entry to embed specification in set brackets). For cases where a consolidation with replacement is performed these sets should be nonoverlapping. Note that each sub list may include a distinct specification convention.
Note that postmunge(.) inversion is supported in conjunction with any of these Binary options. When applying inversion based on a specified list of columns (as opposed to inversion='test' for instance), if the specification includes a Binary returned column it should include the entire set of Binary columns associated with that consolidation, and if the Binary application was in the retain convention the inversion list should specify the Binary input columns instead of the Binary output columns.
(One may wish to abstain from stochastic_impute_categoric in conjunction with Binary since it may
interfere with the extent of contraction by expanding the number of activation sets.)
Some additional detail on Binary provided in the essay [Tabular Engineering with Automunge](https://medium.com/automunge/tabular-engineering-with-automunge-4cf9c43510e).
* PCAn_components: defaults to False for no PCA dimensionality reduction performed.
A user can pass _an integer_ to define the number of PCA returned features for
purposes of dimensionality reduction, such integer to be less than the otherwise
returned number of sets. Function will default to kernel PCA for all non-negative
sets or otherwise Sparse PCA. Also if this value is passed as a _float <1.0_ then
linear PCA will be applied such that the returned number of sets are the minimum
number that can reproduce that percent of the variance.
Note this can also be passed in conjunction with assigned PCA type or parameters in
the ML_cmnd object. Note that by default boolean integer and ordinal encoded returned
columns are excluded from PCA, which convention can be updated in ML_cmnd if desired.
These methods apply PCA with the scikit-learn library.
As a special convention, if PCAn_components passed as _None_ PCA is performed when # features exceeds 0.5 # rows (as a heuristic).
(The 0.5 value can also be updated in ML_cmnd by passing to ML_cmnd['PCA_cmnd']['col_row_ratio'].)
Note that inversion as can be performed with postmunge(.) is not currently supported for columns returned from PCA.
* PCAexcl: a _list_ of column headers for columns that are to be excluded from
any application of PCA, defaults to _[]_ (an empty list) for cases where no numeric columns are desired to
be excluded from PCA. Note that column headers can be passed as consistent with the passed df_train
to exclude from PCA all columns derived from a particular input column or alternatively can be
passed with the returned column headers which include the suffix appenders to exclude just those
specific columns from PCA.
* orig_headers: accepts boolean defaults to False, when activated the returned columns have suffix appenders stripped to return consistent column headers as input. Note that this may result in redundent column headers in the returned dataframe and privacy_encode when activated takes precedence. Was created for use in workflows supporting integration of noise injection into existing data pipelines. Consistent basis applied in postmunge.
* excl_suffix: boolean selector _{True, False}_ for whether columns headers from 'excl'
transform are returned with suffix appender '\_excl' included. Defaults to False for
no suffix. For advanced users setting this to True makes navigating data structures a
little easier at small cost of aesthetics of any 'excl' pass-through column headers.
('excl' transform is for direct pass-through with no transforms, no infill, and no data type conversion.
Note that 'excl' can be cast as the default category under automation to columns not otherwise assigned by setting powertransform='excl'.)
* ML_cmnd:
The ML_cmnd allows a user to set options or pass parameters to model training
operations associated with ML infill, feature importance, or PCA. ML_cmnd is passed
as a dictionary with first tier valid keys of:
{'autoML_type', 'MLinfill_cmnd', 'customML', 'PCA_type', 'PCA_cmnd', 'PCA_retain', 'leakage_tolerance',
'leakage_sets', 'leakage_dict', 'full_exclude', 'hyperparam_tuner', 'randomCV_n_iter',
'stochastic_training_seed', 'stochastic_impute_numeric', 'stochastic_impute_numeric_mu',
'stochastic_impute_numeric_sigma', 'stochastic_impute_numeric_flip_prob', 'stochastic_impute_numeric_noisedistribution', 'stochastic_impute_categoric', 'stochastic_impute_categoric_flip_prob', 'stochastic_impute_categoric_weighted', 'halt_iterate', 'categoric_tol', 'numeric_tol', 'automungeversion', 'optuna_n_iter', 'optuna_timeout', 'optuna_kfolds', 'optuna_fasttune', 'optuna_early_stop', 'optuna_max_depth_tuning_stepsize', 'xgboost_gpu_id'}
When a user passed ML_cmnd as an empty dictionary, any default values are populated internally.
The most relevant entries here are 'autoML_type' to choose the autoML framework for predictive
models, and ML_cmnd to pass parameters to the models. The default option for 'autoML_type' is 'randomforest' which uses a Scikit-learn Random
Forest implementation, other options are supported as one of {'randomforest', 'customML',
'catboost', 'flaml'}, each discussed further below. The customML scenario is for user defined
machine learning algorithms, and documented separately later in this document in the section [Custom ML Infill Functions](https://github.com/Automunge/AutoMunge#custom-ml-infill-functions).
(Other ML_cmnd options beside autoML_type, like for early stopping through iterations, stochastic noise injections, hyperparpameter tuning, leakage assessment, etc, are documented a few paragraphs down after discussing the autoML_type scenarios.)
Here is an example of the core components of specification, which include the
autoML_type to specify the learning library, the MLinfill_cmnd to pass parameters
to the learning library, and similar options for PCA via PCA_type and PCA_cmnd.
```
ML_cmnd = {'autoML_type':'randomforest',
'MLinfill_cmnd':{'RandomForestClassifier':{}, 'RandomForestRegressor':{}},
'PCA_type':'default',
'PCA_cmnd':{}}
```
For example, a user who doesn't mind a little extra training time for ML infill
could increase the passed n_estimators beyond the scikit default of 100.
```
ML_cmnd = {'autoML_type':'randomforest',
'MLinfill_cmnd':{'RandomForestClassifier':{'n_estimators':1000},
'RandomForestRegressor':{'n_estimators':1000}}}
```
A user can also perform hyperparameter tuning of the parameters passed to the
predictive algorithms by instead of passing distinct values passing lists or
range of values. This is currently supported for randomforest.
The hyperparameter tuning defaults to grid search for cases
where user passes any of fit parameters as lists or ranges, for example:
```
ML_cmnd = {'autoML_type':'randomforest',
'hyperparam_tuner':'gridCV',
'MLinfill_cmnd':{'RandomForestClassifier':{'max_depth':range(4,6)},
'RandomForestRegressor' :{'max_depth':[3,6,12]}}}
```
A user can also perform randomized search via ML_cmnd, and pass parameters as
distributions via scipy stats module such as:
```
from scipy import stats
ML_cmnd = {'autoML_type':'randomforest',
'hyperparam_tuner' : 'randomCV',
'randomCV_n_iter' : 15,
'MLinfill_cmnd':{'RandomForestClassifier':{'max_depth':stats.randint(3,6)},
'RandomForestRegressor' :{'max_depth':[3,6,12]}}}
```
Other autoML options besides random forest are also supported, each of which requires installing
the associated library (which aren't listed in the automunge dependencies). Citations associated with each
of these libraries are provided for reference.
One autoML option for ML infill and feature importance is by the CatBoost library.
Requires externally installing CatBoost library. Uses early stopping by default for regression
and no early stopping by default for classifier. Note that the random_seed
parameter is already passed based on the automunge(.) randomseed. Further information
on the CatBoost library is available on arxiv as Anna Veronika Dorogush, Vasily Ershov, Andrey Gulin. CatBoost: gradient
boosting with categorical features support [arXiv:1810.11363](https://arxiv.org/abs/1810.11363).
```
#CatBoost available by passing ML_cmnd as
ML_cmnd = {'autoML_type':'catboost'}
```
Can pass parameters to model initialization and fit operation as:
```
#example of turning on early stopping for classifier
#by passing a eval_ratio for validation set which defaults to 0.15 for regressor
#note eval_ratio is an Automunge parameter, other parameters accepted are those from CatBoost library
ML_cmnd = {'autoML_type':'catboost',
'MLinfill_cmnd' : {'catboost_classifier_model' : {},
'catboost_classifier_fit' : {'eval_ratio' : 0.15 },
'catboost_regressor_model' : {},
'catboost_regressor_fit' : {}}}
```
Another ML infill option is available by the FLAML library. Further information
on the FLAML library is available on arxiv as Chi Wang, Qingyun Wu, Markus Weimer,
Erkang Zhu. FLAML: A Fast and Lightweight AutoML Library [arXiv:1911.04706](https://arxiv.org/abs/1911.04706).
```
#FLAML available by passing ML_cmnd as
ML_cmnd = {'autoML_type':'flaml'}
```
Can pass parameters to fit operation as:
```
#example of setting time budget in seconds for training
ML_cmnd = {'autoML_type':'flaml',
'MLinfill_cmnd' : {'flaml_classifier_fit' : {'time_budget' : 15 },
'flaml_regressor_fit' : {'time_budget' : 15}}}
```
Another option is available for gradient boosting via the XGBoost library. Further information
on the XGBoost library is available on arxiv as Tianqi Chen, Carlos Guestrin. XGBoost: A Scalable
Tree Boosting System [arXiv:1603.02754](https://arxiv.org/abs/1603.02754).
```
#XGboost available by passing ML_cmnd as
ML_cmnd = {'autoML_type':'xgboost'}
```
The XGBoost implementation has Bayesian hyperparameter tuning available by way of the Optuna library by activating ML_cmnd['hyperparam_tuner'] = 'optuna_XGB1'. Optuna tuning accepts parameters for designating the max number of tuning iterations ('optuna_n_iter'), max tuning time in seconds ('optuna_timeout'), selecting a count for k-fold cross validation for tuning ('optuna_kfolds'), activating only evaluating one k-fold per trial ('optuna_fasttune'), selecting an early stopping criteria for max number of tuning cycles without improved performance ('optuna_early_stop'), and selecting a step size for max_depth tuning (with longer tuning times it may be beneficial to change from 2 to 1) ('optuna_max_depth_tuning_stepsize'). The early stopping criteria optuna_n_iter/optuna_timeout/optuna_early_stop are the values applied per target feature (tuning for a feature is halted when one of these conditions are met). Can pass specific parameters (such as selecting whether to run inference with GPU or CPU with 'predictor'), activate GPU training, tune other hyperparameters with optuna, and set tuning options from the shown defaults as:
```
ML_cmnd = {'autoML_type' : 'xgboost',
'MLinfill_cmnd' : {'xgboost_classifier_fit' : {'predictor' : 'cpu_predictor' },
'xgboost_regressor_fit' : {'predictor' : 'cpu_predictor' }},
'xgboost_gpu_id' : 0,
'hyperparam_tuner' : 'optuna_XG1',
'optuna_n_iter' : 100,
'optuna_timeout' : 600,
'optuna_kfolds' : 5,
'optuna_fasttune' : True,
'optuna_early_stop': 50,
'optuna_max_depth_tuning_stepsize' : 2,
}
```
The implementation makes of XGBoost's "scikit-learn API", so accepted parameters are consistent with XGBClassifier and XGBRegressor. Please note that we recommend setting the gpu_id with ML_cmnd['xgboost_gpu_id'] (rather than passing through parameters) for consistent treatment between tuning and training, which automatically sets tree_method as gpu_hist. (If you intend to put the automunge(.) returned postprocess_dict into production you may want to set the predicter to cpu_predictor as shown so can run ML infill inference without a GPU.) If you don't know your gpu device id, they are usually integers (e.g. if you have one CUDA gpu the device id is usually the integer 0, you can verify this by passing "nvidia-smi" in a terminal window). 'xgboost_gpu_id' defaults to False when not specified, meaning training and inference are conducted on CPU.
Further information on the Optuna library is available on arxiv as Takuya Akiba, Shotaro Sano, Toshihiko Yanase, Takeru Ohta, Masanori Koyama. Optuna: A Next-generation Hyperparameter Optimization Framework. [arXiv:1907.10902](https://arxiv.org/abs/1907.10902#). Our tuning implementation owes a thank you to a tutorial provided by Optuna.
Please note that model training by default incorporates a random random seed with each application,
as can be deactivated by passing ML_cmnd['stochastic_training_seed'] = False to defer to the
automunge(.) randomseed parameter.
Please note that there is a defaulted option to inject stochastic noise into derived imputations that
can be deactivated for numeric features by passing ML_cmnd['stochastic_impute_numeric'] = False
and/or categoric features by passing ML_cmnd['stochastic_impute_categoric'] = False.
Numeric noise injections sample from either a default laplace distribution or optionally a normal
distribution. Default noise profile is mu=0, sigma=0.03, and flip_prob=0.06 (where flip_prob is ratio
of a feature set's imputations receiving injections). Please note that this scale is based on a
min/max scaled representation of the imputations. Parameters can be configured by passing
ML_cmnd entries as floats to ML_cmnd['stochastic_impute_numeric_mu'],
ML_cmnd['stochastic_impute_numeric_sigma'],
ML_cmnd['stochastic_impute_numeric_flip_prob'] or as a string to
ML_cmnd['stochastic_impute_numeric_noisedistribution'] as one of {'normal', 'laplace', 'abs_normal', 'negabs_normal', 'abs_laplace', 'negabs_laplace'}.
Categoric noise injections sample from a uniform random draw from the set of unique
activation sets in the training data (as may include one or more columns for
categoric representations), such that for a ratio of a feature's set's imputations based on
the flip_prob (defaulting to 0.03 for categoric), each target imputation activation set is replaced with
the randomly drawn activation set. Parameter can be configured by passing
an ML_cmnd entry as a float to ML_cmnd['stochastic_impute_categoric_flip_prob'].
Categoric noise injections by default weight injections per distribution of activations as found in train set.
This can be deactivated by setting ML_cmnd['stochastic_impute_categoric_weighted'] as False.
(Please note that we suspect stochastic injections to imputations may have potential to interfere
with infilliterate early stopping criteria associated with ML_cmnd['halt_iterate'] documented
above with the infilliterate parameter.)
To bidirectionally exclude particular features from each other's imputation model bases
(such as may be desired in expectation of data leakage), a user can designate via
entries to ML_cmnd['leakage_sets'], which accepts entry of a list of column headers
or as a list of lists of column headers, where for each list of column headers,
entries will be excluded from each other's imputation model basis. We suggest
populating with column headers in form of data passed to automunge(.) (before suffix
appenders) although specific returned column headers can also be included if desired.
To unidirectionally exclude particular features from another feature's imputation model basis,
a user can designate via entries to ML_cmnd['leakage_dict'], which accepts entry of a dictionary
with target feature keys and values of a set of features to exclude from the target feature's
basis. This also accepts headers in either of input or returned convention.
To exclude a feature from ML infill basis of all other features, can pass as a list of entries to
ML_cmnd['full_exclude']. This also accepts headers in either of input or returned convention.
Please note that columns returned from transforms with MLinfilltype 'totalexclude' (such as
for the excl passthrough transform) are automatically excluded from model training basis.
Note that entries to 'full_exclude' are also excluded from PCA.
Please note that an operation is performed to evaluate for cases of a kind of data
leakage across features associated with correlated presence of missing data
across rows. Leakage tolerance is associated with an automated evaluation for a
potential source of data leakage across features in their respective imputation
model basis. The method compares aggregated NArw activations from a target feature
in a train set to the surrounding features in a train set and for cases where
separate features share a high correlation of missing data based on the shown
formula we exclude those surrounding features from the imputation model basis
for the target feature.
((Narw1 + Narw2) == 2).sum() / NArw1.sum() > leakage_tolerance
Where target features are those input columns with some returned column serving
as target for ML infill. ML_cmnd['leakage_tolerance'] defaults to 0.85 when not
specified, and can be set as 1 or False to deactivate the assessment.
If no ML infill model is trained due to insufficient features remaining after leakage carveouts for a target feature, a validation result is recorded in postprocess_dict['miscparameters_results']['not_enough_samples_or_features_for_MLinfill_result']['(feature)'].
A user can also assign specific methods for PCA transforms. Current PCA_types
supported include one of {'PCA', 'SparsePCA', 'KernelPCA'}, all via Scikit-Learn.
Note that the n_components are passed separately with the PCAn_components
argument noted above. A user can also pass parameters to the PCA functions
through the PCA_cmnd, for example one could pass a kernel type for KernelPCA
as:
```
ML_cmnd = {'PCA_type':'KernelPCA',
'PCA_cmnd':{'kernel':'sigmoid'}}
```
Note that for the default of ML_cmnd['PCA_type'] = 'default', PCA will default to KernelPCA
for all non-negative sets or otherwise Sparse PCA (unless PCAn_components was passed as float
between 0-1 in which case will apply as 'PCA'.
By default, ML_cmnd['PCA_cmnd'] is initialized internal to library with {'bool_ordl_PCAexcl':True},
which designates that returned ordinal and boolean encoded columns are to be excluded from PCA.
This convention by be turned off by passing as False, or to only exclude boolean integer but
not ordinal encoded columns can pass ML_cmnd['PCA_cmnd'] as {'bool_PCA_excl':True}.
For the PCA aggregation to be performed without replacement, can pass ML_cmnd['PCA_retain']=True.
* assigncat: assigncat accepts a dictionary used to assign root categories of transformation to
input features. The keys of the dictionary accept root transformation categories and the corresponding
values should be assigned as a string or list of strings representing column headers of input features.
```
#Here are a few representative root categories.
#first row: categoric encodings
#second row: corresponding categoric encodings with noise injection
#third row: numeric normalizaitons and corresponding normalizations with noise
#fourth row: examples of binning transforms (as could be added to a normalization family tree)
#fifth row: miscellaneous, including integer sets, search, string parsing, explainability support, and passthrough
assigncat = {'1010':[], 'onht':[], 'ordl':[], 'bnry':[], 'hash':[], 'hsh2':[],
'DP10':[], 'DPoh':[], 'DPod':[], 'DPbn':[], 'DPhs':[], 'DPh2':[],
'nmbr':[], 'mnmx':[], 'retn':[], 'DPnb':[], 'DPmm':[], 'DPrt':[],
'bins':[], 'pwr2':[], 'bnep':[], 'bsor':[], 'por2':[], 'bneo':[],
'ntgr':[], 'srch':[], 'or19':[], 'tlbn':[], 'excl':[], 'exc2':[]}
```
Full options are provided in document below (in section
titled "Library of Transformations"). [Library of Transformations](https://github.com/Automunge/AutoMunge#library-of-transformations)
A user may add column header identifier strings to each of these lists to assign
a distinct specific processing approach to any column (including labels). Note
that this processing category will serve as the "root" of the tree of transforms
as defined in the transformdict. Note that additional categories may be passed if
defined in the passed transformdict and processdict. An example of usage here
could be to assign the numeric noise injection transform 'DPnb' to two input features
we'll call 'input_column_1' and 'input_column_2'.
```
assigncat = {'DPnb':['input_column_1', 'input_column_2']}
```
Note that for single entry column assignments a user can just pass the string or integer
of the column header without the list brackets.
Note tht a small number of transforms, such as DPmp or DPse, support assigncat specification
with multiple input columns treated as a single feature, available by in the assigncat
specification replacing a single input header string with a {set} of input header strings.
```
assigncat = {'DPmp':[{'input_column_1', 'input_column_2'}]}
```
* assignparam:
A user may pass column-specific or category specific parameters to those transformation
functions that accept parameters. Any parameters passed to automunge(.) will be saved in
the postprocess_dict and consistently applied in postmunge(.). assignparam is
a dictionary that should be formatted per following example:
```
#template:
assignparam = {'global_assignparam' : {'(parameter)': 42},
'default_assignparam' : {'(category)' : {'(parameter)' : 42}},
'(category)' : {'(column)' : {'(parameter)' : 42}}}
#example:
assignparam = {'category1' : {'column1' : {'param1' : 123}, 'column2' : {'param1' : 456}},
'category2' : {'column3' : {'param2' : 'abc', 'param3' : 'def'}}}
```
In other words: The first layer keys are the transformation category for
which parameters are intended. The second layer keys are string identifiers
for the columns for which the parameters are intended. The third layer keys
are the parameters whose values are to be passed. To specify new default
parameters for a given transformation category 'default_assignparam' can
be applied, or to specify global parameters for all transformation functions
'global_assignparam' can be applied. Transforms that do not accept a particular
parameter will just ignore the specification.
As an example with actual parameters, consider the transformation category
'splt' intended for 'column1', which accepts parameter 'minsplit' for minimum
character length of detected overlaps. If we wanted to pass 4 instead of the
default of 5:
```
assignparam = {'splt' : {'column1' : {'minsplit' : 4}}}
```
Note that the category identifier should be the category entry to the family
tree primitive associated with the transform, which may be different than the
root category of the family tree assigned in assigncat. The set of family
tree definitions for root categories are included below for reference. Generally
speaking, the transformation category to serve as a target for asisgnparam
assignment will match the recorded suffix appender of the returned column headers.
As an example, to demonstrate edge case for cases where the transformation category does not match
the transformation function (based on entries to transformdict and
processdict), if we want to pass a parameter to turn off UPCS transform included
in or19 family tree and associated with the or19 transformation category for
instance, we would pass the parameter to or19 instead of UPCS because assignparam
inspects the transformation category associated with the transformation function,
and UPCS function is the processdict entry for or19 category entry in the family
tree primitives associated with the or19 root category, even though 'activate' is
an UPCS transformation function parameter. A helpful rule of thumb to help distinguish is that
the suffix appender recorded in the returned column associated with an applied transformation
function should match the transformation category serving as target for assignparam assignment,
as in this case the UPCS transform records a 'or19' suffix appender. (This clarification
intended for advanced users to avoid ambiguity.)
```
assignparam = {'or19' : {'column1' : {'activate' : False}}}
```
Note that column string identifiers may just be the source column string or may
include the suffix appenders for downstream columns serving as input to the
target transformation function, such as may be useful if multiple versions of
the same transformation are applied within the same family tree. If more than
one column identifier matches a column in assignparam entry to a transformation
category (such as both the source column and the derived column serving as input
to the transformation function), the derived column (such as may include suffix
appenders) will take precedence.
Note that if a user wishes to overwrite the default parameters associated with a
particular category for all columns without specifying them individually they can
pass a 'default_assignparam' entry as follows (this only overwrites those parameters
that are not otherwise specified in assignparam).
```
assignparam = {'category1' : {'column1' : {'param1' : 123}, 'column2' : {'param1' : 456}},
'category2' : {'column3' : {'param2' : 'abc', 'param3' : 'def'}},
'default_assignparam' : {'category3' : {'param4' : 789}}}
```
Or to pass the same parameter to all transformations to all columns, can use the
'global_assignparam'. The global_assignparam may be useful for instance to turn off
inplace transformations such as to retain family tree column grouping correspondence
in returned set. Transformations that do not accept a particular parameter will just
ignore.
```
assignparam = {'global_assignparam' : {'inplace' : False}}
```
In order of precedence, parameter assignments may be designated targeting a transformation
category as applied to a specific column header with suffix appenders, a transformation
category as applied to an input column header (which may include multiple instances),
all instances of a specific transformation category, all transformation categories, or may
be initialized as default parameters when defining a transformation category.
See the Library of Transformations section below for those transformations that
accept parameters.
* assigninfill
```
#Here are the current infill options built into our library, which
#we are continuing to build out.
assigninfill = {'stdrdinfill':[], 'MLinfill':[], 'zeroinfill':[], 'oneinfill':[],
'adjinfill':[], 'meaninfill':[], 'medianinfill':[], 'negzeroinfill':[],
'modeinfill':[], 'lcinfill':[], 'naninfill':[]}
```
A user may add column identifier strings to each of these lists to designate the
column-specific infill approach for missing or improperly formatted values. The
source column identifier strings may be passed for assignment of common infill
approach to all columns derived from same source column, or derived column identifier
strings (including the suffix appenders from transformations) may be passed to assign
infill approach to a specific derived column. Note that passed derived column headers
take precedence in case of overlap with passed source column headers. Note that infill
defaults to MLinfill if nothing assigned and the MLinfill argument to automunge is set
to True. Note that for single entry column assignments a user can just pass the string
or integer of the column header without the list brackets. Note that the infilled cells
are based on the rows corresponding to activations from the NArw_marker parameter.
```
# - stdrdinfill : the default infill specified in the library of transformations for
# each transform below.
# - MLinfill : for MLinfill to distinct columns when MLinfill parameter not activated
# - zeroinfill : inserting the integer 0 to missing cells.
# - oneinfill : inserting the integer 1.
# - negzeroinfill : inserting the float -0.
# - adjinfill : passing the value from the preceding row to missing cells.
# - meaninfill : inserting the mean derived from the train set to numeric columns.
# - medianinfill : inserting the median derived from the train set to numeric columns.
# (Note currently boolean columns derived from numeric are not supported
# for mean/median and for those cases default to those infill from stdrdinfill.)
# - interpinfill : performs linear interpolation to numeric sets, based on pandas interpolate
# - modeinfill : inserting the most common value for a set, note that modeinfill
# supports multi-column boolean encodings, such as one-hot encoded sets or
# binary encoded sets.
# - lcinfill : comparable to modeinfill but with least common value instead of most.
# - naninfill : inserting NaN to missing cells.
#an example of passing columns to assign infill via assigninfill:
#for source column 'column1', which hypothetically is returned through automunge(.) as
#'column1_nmbr', 'column1_mnmx', 'column1_bxcx_nmbr'
#we can assign MLinfill to 'column1_bxcx_nmbr' and meaninfill to the other two by passing
#to an automunge call:
assigninfill = {'MLinfill':['column1_bxcx_nmbr'], 'meaninfill':['column1']}
```
* assignnan: for use to designate data set entries that will be targets for infill, such as
may be entries not covered by NArowtype definitions from processdict. For example, we have
general convention that NaN (as np.nan) is a target for infill, but a data set may be passed with a custom
string signal for infill, such as 'unknown'. This assignment operator saves the step of manual
munging prior to passing data to functions by allowing user to specify custom targets for infill.
assignnan accepts following form, populated in first tier with any of 'categories'/'columns'/'global'
```
assignnan = {'categories':{}, 'columns':{}, 'global':[]}
```
Note that global takes entry as a list, while categories and columns take entries as a dictionary
with values of the target assignments and corresponding lists of terms, which could be populated
with entries as e.g.:
```
assignnan = {'categories' : {'cat1' : ['unknown1']},
'columns' : {'col1' : ['unknown2']},
'global' : ['unknown3']}
```
Where 'cat1' is example of root category, 'col1' is example of source column header, and 'unknown1'/2/3
are examples of entries intended for infill corresponding to each. In cases of redundant specification,
global takes precedence over columns which takes precedence over categories. Note that lists of terms
can also be passed as single values such as string / number for internal conversion to list.
assignnan also supports stochastic and range based injections, such as to target for infill specific
segments of a set's distribution. 'injections' can be passed to assignnan as:
```
assignnan = {'injections' : {'(column)' : {'inject_ratio' : (float),
'range' : {'ratio' : (float),
'ranges' : [[min1, max1], [min2, max2]]},
'minmax_range' : {'ratio' : (float),
'ranges' : [[min1, max1], [min2, max2]]},
'entries' : ['(entry1)', '(entry2)'],
'entry_ratio' : {'(entry1)' : (float),
'(entry2)' : (float)}
}
}
}
#where injections may be specified for each source column passed to automunge(.)
#- inject_ratio is uniform randomly injected nan points to ratio of entries
#- range is injection within a specified range based on ratio float defaulting to 1.0
#- minmax_range is injection within scaled range (accepting floats 0-1 based on received
#column max and min (returned column is not scaled)
#- entries are full replacement of specific entries to a categoric set
#- entry_ratio are partial injection to specific entries to a categoric set per specified float ratio
```
* transformdict: a dictionary allowing a user to pass a custom tree of transformations or to overwrite
family trees defined in the transform_dict internal to the library. Defaults to _{}_ (an empty dictionary).
Note that a user may define their own (traditionally 4 character) string "root categories"
by populating a "family tree" of transformation categories associated with that root category,
which are a way of specifying the type and order of transformation functions to be applied.
Each category populated in a family tree requires its own transformdict root category family tree definition
as well as an entry in the processdict described below for assigning associated transformation functions and data properties.
Note that the library has an internally defined library of transformation categories prepopulated in the
internal transform_dict which are detailed below in the Library of Transformations section of this document.
For clarity transformdict refers to the user passed data structure which is subsequently consolidated into the internal "transform_dict" (with underscore) data structure. The returned version in postprocess_dict['transform_dict'] records entries that were inspected in the associated automunge(.) call.
```
#transform_dict is for purposes of populating
#for each transformation category's use as a root category
#a "family tree" set of associated transformation categories
#which are for purposes of specifying the type and order of transformation functions
#to be applied when a transformation category is assigned as a root category
#we'll refer to the category key to a family as the "root category"
#we'll refer to a transformation category entered into
#a family tree primitive as a "tree category"
#a transformation category may serve as both a root category
#and a tree category
#each transformation category will have a set of properties assigned
#in the corresponding process_dict data structure
#including associated transformation functions, data properties, and etc.
#a root category may be assigned to a column with the user passed assigncat
#or when not specified may be determined under automation via _evalcategory
#when applying transformations
#the transformation functions associated with a root category
#will not be applied unless that same category is populated as a tree category
#the family tree primitives are for purposes of specifying order of transformations
#as may include generations and branches of derivations
#as well as for managing column retentions in the returned data
#(as in some cases intermediate stages of transformations may or may not have desired retention)
#the family tree primitives can be distinguished by types of
#upstream/downstream, supplement/replace, offsping/no offspring
#___________
#'parents' :
#upstream / first generation / replaces column / with offspring
#'siblings':
#upstream / first generation / supplements column / with offspring
#'auntsuncles' :
#upstream / first generation / replaces column / no offspring
#'cousins' :
#upstream / first generation / supplements column / no offspring
#'children' :
#downstream parents / offspring generations / replaces column / with offspring
#'niecesnephews' :
#downstream siblings / offspring generations / supplements column / with offspring
#'coworkers' :
#downstream auntsuncles / offspring generations / replaces column / no offspring
#'friends' :
#downstream cousins / offspring generations / supplements column / no offspring
#___________
#each of the family tree primitives associated with a root category
#may have entries of zero, one, or more transformation categories
#when a root category is assigned to a column
#the upstream primitives are inspected
#when a tree category is found
#as an entry to an upstream primitive associated with the root category
#the transformation functions associated with the tree category are performed
#if any tree categories are populated in the upstream replacement primitives
#their inclusion supersedes supplement primitive entries
#and so the input column to the transformation is not retained in the returned set
#with the column replacement either achieved by an inplace transformation
#or subsequent deletion operation
#when a tree category is found
#as an entry to an upstream primitive with offspring
#after the associated transformation function is performed
#the downstream primitives of the family tree of the tree category is inspected
#and those downstream primitives are treated as a subsequent generation's upstream primitives
#where the input column to that subsequent generation is the column returned
#from the transformation function associated with the upstream tree category
#this is an easy point of confusion so as further clarification on this point
#the downstream primitives associated with a root category
#will not be inspected when root category is applied
#unless that root category is also entered as a tree category entry
#in one of the root category's upstream primitives with offspring
```
Once a root category has been defined, it can be assigned to a received column in assigncat.
For example, a user wishing to define a new set of transformations for a numerical set can define a new root category 'newt'
that combines NArw, min-max, box-cox, z-score, and standard deviation bins by passing a
transformdict as:
```
transformdict = {'newt' : {'parents' : ['bxc4'],
'siblings': [],
'auntsuncles' : ['mnmx', 'bins'],
'cousins' : ['NArw'],
'children' : [],
'niecesnephews' : [],
'coworkers' : [],
'friends' : []}}
#Where since bxc4 is passed as a parent, this will result in pulling
#offspring keys from the bxc4 family tree, which has a nbr2 key as children.
#from automunge internal library:
transform_dict.update({'bxc4' : {'parents' : ['bxcx'],
'siblings': [],
'auntsuncles' : [],
'cousins' : ['NArw'],
'children' : [],
'niecesnephews' : [],
'coworkers' : ['nbr2'],
'friends' : []}})
#note that 'nbr2' is passed as a coworker primitive meaning no downstream
#primitives would be accessed from the nbr2 family tree. If we wanted nbr2 to
#incorporate any offspring from the nbr2 tree we could instead assign as children
#or niecesnephews.
#Having defined this root category 'newt', we can then assign to a column in assigncat
#(Noting that we still need a corresponding processdict entry unless overwriting an internal transform_dict entry.)
assigncat = {'newt':['targetcolumn']}
#Note that optionally primitives without entries can be omitted,
#and list brackets can be omitted for single entries to a primitive
#the following is an equivalent specification to the 'newt' entry above
transformdict = {'newt' : {'parents' : 'bxc4',
'auntsuncles' : ['mnmx', 'bins'],
'cousins' : 'NArw'}}
```
Basically here 'newt' is the root category key and once defined can be assigned as a root category in assigncat
to be applied to a column or can also be passed to one of the family primitives associated with itself or some other root category
to apply the corresponding transformation functions populated in the processdict entry. Once a transformation category is accessed
based on an entry to a family tree primitive associated with a root category assigned to a column,
the corresponding processdict transformation function is applied, and if it was accessed as a family tree
primitive with downstream offspring then those offspring keys are pulled from
that key's family tree. For example, here mnmx is passed as an auntsuncles which
means the mnmx processing function is applied with no downstream offspring. The
bxc4 key is passed as a parent which means the transform associated with the bxc4 category is applied followed
by any downstream transforms from the bxc4 key family tree, which we also show.
Note the family primitives tree can be summarized as:
```
'parents' : upstream / first generation / replaces column / with offspring
'siblings': upstream / first generation / supplements column / with offspring
'auntsuncles' : upstream / first generation / replaces column / no offspring
'cousins' : upstream / first generation / supplements column / no offspring
'children' : downstream parents / offspring generations / replaces column / with offspring
'niecesnephews' : downstream siblings / offspring generations / supplements column / with offspring
'coworkers' : downstream auntsuncles / offspring generations / replaces column / no offspring
'friends' : downstream cousins / offspring generations / supplements column / no offspring
```

Note that a user should avoid redundant entries across a set of upstream or downstream primitives.
If a redundant transformation function is desired to a distinct upstream or downstream inputcolumn (such as may be desired
to apply same transform but with different parameters), each of the redundant applications needs a distinct transformation category defined in
the processdict (and a distinct suffix appender which is automatic based on the transformation category).
Since there is recursion involved a user should be careful of creating infinite loops from passing
downstream primitive entries with offspring whose own offspring coincide with an earlier generation.
(The presence of infinite loops is tested for to a max depth of 1111 offspring, an arbitrary figure.)
Note that transformdict entries can be defined to overwrite existing root category entries defined in the internal library.
For example, if we wanted our default numerical scaling to be by min-max instead of z-score normalization, one way we could accomplish
that is to overwrite the 'nmbr' family tree which is the default root category applied to numeric sets under automation. (Other default
root categories under automation are detailed further below in the
"[Default Tranformations](https://github.com/Automunge/AutoMunge#default-transformations)" section.) An alternate approach could be to
overwrite the nmbr processdict entry which we'll demonstrate shortly.
```
transformdict = {'nmbr' : {'auntsuncles' : 'mnmx',
'cousins' : 'NArw'}}
```
Note that when we define a new root category family tree such as the 'newt' example shown above, we also need
to define a corresponding processdict entry for the new category, which we detail next.
Further detail on the transformdict data format provided in the essay [Data Structure](https://medium.com/automunge/data-structure-59e52f141dd6). For tutorials on defining a family tree, see also the essay [Specification of Derivations with Automunge](https://medium.com/automunge/specification-of-derivations-with-automunge-6174ca227184).
* processdict: a dictionary allowing a user to specify transformation category properties corresponding
to new categories defined in transformdict or to overwrite process_dict entries defined internal to the library.
Defaults to _{}_ (an empty dictionary). The types of properties specified include the associated transformation
functions, types of data that will be targets for infill, a classification of data types (such as between numeric, integer, categoric, etc),
and more detailed below. All transformation categories used in transformdict, including
those used as root categories as well as transformation category entries to family tree primitives associated
with a root category, require a corresponding entry in the processdict to define transformation category
properties. Only in cases where a transformdict entry is being passed to overwrite an existing category internal
to the library is a corresponding processdict entry not required. However note that a processdict entry can be passed
without a corresponding root category definition in transformdict, which may be used when passing a custom transformation category to a family tree primitive without offspring.
We'll describe the options for processdict entries here. For clarity processdict refers to the user passed data structure which is subsequently consolidated into the internal "process_dict" (with underscore) data structure.
The returned version in postprocess_dict['process_dict'] records entries that were inspected in the
associated automunge(.) call.
```
#A user should pass either a pair of processing functions to both
#dualprocess and postprocess, or alternatively just a single processing
#function to singleprocess, and omit or pass None to those not used.
#A user can also pass an inversion function to inverseprocess if available.
#Most of the transforms defined internal to the library follow this convention.
#dualprocess: for passing a processing function in which normalization
# parameters are derived from properties of the training set
# and jointly process the train set and if available corresponding test set
#singleprocess: for passing a processing function in which no normalization
# parameters are needed from the train set to process the
# test set, such that train and test sets processed separately
#postprocess: for passing a processing function in which normalization
# parameters originally derived from the train set are applied
# to separately process a corresponding test set
# An entry should correspond to the dualprocess entry.
#inverseprocess: for passing a processing function used to invert
# a corresponding forward pass transform
# An entry should correspond to the dualprocess or singleprocess entry.
#__________________________________________________________________________
#Alternative streamlined processing function conventions are also available
#which may be populated as entries to custom_train / custom_test / custom_inversion.
#These conventions are documented in the readme section "Custom Transformation Functions".
#In cases of redundancy custom_train entry specifications take precedence
#over dualprocess/singleprocess/postprocess entries.
#custom_train: for passing a train set processing function in which normalization parameters
# are derived from properties of the training set. Will be used to process both
# train and test data when custom_test not provided (in which case similar to singleprocess convention).
#custom_test: for passing a test set processing function in which normalization parameters
# that were derived from properties of the training set are used to process the test data.
# When omitted custom_train will be used to process both the train and test data.
# An entry should correspond to the custom_train entry.
#custom_inversion: for passing a processing function used to invert
# a corresponding forward pass transform
# An entry should correspond to the custom_train entry.
#___________________________________________________________________________
#The processdict also specifies various properties associated with the transformations.
#At a minimum, a user needs to specify NArowtype and MLinfilltype or otherwise
#include a functionpointer entry.
#___________________________________________________________________________
#NArowtype: classifies the type of entries that are targets for infill.
# can be entries of {'numeric', 'integer', 'justNaN', 'exclude',
# 'positivenumeric', 'nonnegativenumeric',
# 'nonzeronumeric', 'parsenumeric', 'datetime'}
# Note that in the custom_train convention this is used to apply data type casting prior to the transform.
# - 'numeric' for source columns with expected numeric entries
# - 'integer' for source columns with expected integer entries
# - 'justNaN' for source columns that may have expected entries other than numeric
# - 'binary' similar to justNaN but only the top two most frequent entries are considered valid
# - 'exclude' for source columns that aren't needing NArow columns derived
# - 'totalexclude' for source columns that aren't needing NArow columns derived,
# also excluded from assignnan global option and nan conversions for missing data
# - 'positivenumeric' for source columns with expected positive numeric entries
# - 'nonnegativenumeric' for source columns with expected non-negative numeric (zero allowed)
# - 'nonzeronumeric' for source columns with allowed positive and negative but no zero
# - 'parsenumeric' marks for infill strings that don't contain any numeric characters
# - 'datetime' marks for infill cells that aren't recognized as datetime objects
# ** Note that NArowtype also is used as basis for metrics evaluated in drift assessment of source columns
# ** Note that by default any np.inf values are converted to NaN for infill
# ** Note that by default python None entries are treated as targets for infill
#___________________________________________________________________________
#MLinfilltype: classifies data types of the returned set,
# as may determine what types of models are trained for ML infill
# can be entries {'numeric', 'singlct', 'binary', 'multirt', 'concurrent_act', 'concurrent_nmbr',
# '1010', 'exclude', 'boolexclude', 'ordlexclude', 'totalexclude'}
# 'numeric' single columns with numeric entries for regression (signed floats)
# 'singlct' for single column sets with ordinal entries (nonnegative integer classification)
# 'integer' for single column sets with integer entries (signed integer regression)
# 'binary' single column sets with boolean entries (0/1)
# 'multirt' categoric multicolumn sets with boolean entries (0/1), up to one activation per row
# '1010' for multicolumn sets with binary encoding via 1010, boolean integer entries (0/1),
# with distinct encoding representations by the set of activations
# 'concurrent_act' for multicolumn sets with boolean integer entries as may have
# multiple entries in the same row, different from 1010
# in that columns are independent
# 'concurrent_ordl' for multicolumn sets with ordinal encoded entries (nonnegative integer classification)
# 'concurrent_nmbr' for multicolumn sets with numeric entries (signed floats)
# 'exclude' for columns which will be excluded from infill, included in other features' ML infill bases
# returned data should be numerically encoded
# 'boolexclude' boolean integer set suitable for Binary transform but excluded from all infill
# (e.g. NArw entries), included in other features' ML infill bases
# 'ordlexclude' ordinal set excluded from infill (note that in some cases in library
# ordlexclude may return a multi-column set), included in other features' ML infill bases
# 'totalexclude' for complete passthroughs (excl) without datatype conversions, infill,
# excluded from other features' ML infill bases
#___________________________________________________________________________
#Other optional entries for processdict include:
#info_retention, inplace_option, defaultparams, labelctgy,
#defaultinfill, dtype_convert, functionpointer, and noise_transform.
#___________________________________________________________________________
#info_retention: boolean marker associated with an inversion operation that helps inversion prioritize
#transformation paths with full information recovery. (May pass as True when there is no information loss.)
#___________________________________________________________________________
#inplace_option: boolean marker indicating whether a transform supports the inplace parameter received in params.
# When not specified this is assumed as True (which is always valid for the custom_train convention).
# In other words, in dualprocess/singleprocess convention, if your transform does not support inplace,
# need to specify inplace_option as False
#___________________________________________________________________________
#defaultparams: a dictionary recording any default assignparam assignments associated with the category.
# Note that deviations in user specifications to assignparam as part of an automunge(.) call
# take precedence over defaultparams. Note that when applying functionpointer defaultparams
# from the pointer target are also populated when not previously specified.
#___________________________________________________________________________
#defaultinfill: this option serves to specify a default infill
# applied after NArowtype data type casting and preceding the transformation function.
# (defaultinfill is a precursor to ML infill or other infills applied based on assigninfill)
# defaults to 'adjinfill' when not specified, can also pass as one of
# {'adjinfill', 'meaninfill', 'medianinfill', 'modeinfill', 'lcinfill',
# 'interpinfill', 'zeroinfill', 'oneinfill', 'naninfill', 'negzeroinfill'}
# Note that 'meaninfill' and 'medianinfill' only work with numeric data (based on NArowtype).
# Note that for 'datetime' NArowtype, defaultinfill only supports 'adjinfill' or 'naninfill'
# Note that 'naninfill' is intended for cases where user wishes to apply their own default infill
# as part of a custom_train entry
#___________________________________________________________________________
#dtype_convert: this option is intended for the custom_train convention, accepts boolean entries,
# defaults to True when not specified, False turns off a data type conversion
# that is applied after custom_train transformation functions based on MLinfilltype.
# May also be used to deactivate a floatprecision conversion for any category.
# This option primarily included to support special cases and not intended for wide use.
#___________________________________________________________________________
#labelctgy: an optional entry, should be a string entry of a single transformation category
# as entered in the family tree when the category of the processdict entry is used as a root category.
# Used to determine a basis of feature selection for cases where root
# category is applied to a label set resulting in a set returned in multiple configurations.
# Also used in label frequency levelizer.
# Note that since this is only used for small edge case populating a labelctgy entry is optional.
# If one is not assigned, an arbitrary entry will be accessed from the family tree.
# This option primarily included to support special cases.
#___________________________________________________________________________
#functionpointer: A functionpointer entry
# may be entered in lieu of any or all of these other entries **.
# The functionpointer should be populated with a category that has its own processdict entry
# (or a category that has its own process_dict entry internal to the library)
# The functionpointer inspects the pointer target and passes those specifications
# to the origin processdict entry unless previously specified.
# The functionpointer is intended as a shortcut for specifying processdict entries
# that may be helpful in cases where a new entry is very similar to some existing entry.
# (**As the exception labelctgy not accessed from functionpointer
# since it is specific to a root category's family tree.)
#___________________________________________________________________________
#noise_transform: this option serves to specify the noise injection types for noise transforms
# used to support an entropy seeding based on sampling_dict['sampling_type'] specification
# defaults to False when not specified, can also pass as one of
# {'numeric', 'categoric', 'binary', False}
# numeric is for transforms similar to DPnb/DPmm/DPrt which have a binomial and distribution sampling
# categoric is for transforms similar to DPod/DPmc which have a binomial and a choice sampling
# binary is for transforms similar to an alternate DPbn configuration which only have a binomial sampling
# False is for transforms without sampling_dict['sampling_type'] specification support
#___________________________________________________________________________
#Other clarifications:
#Note that NArowtype is associated with transformation inputs
#including for a category's use as a root category and as a tree category
#MLinfilltype is associated with transformation outputs
#for a category's use as a tree category
```
For example, to populate a custom transformation category 'newt' that uses internally defined transformation functions _process_mnmx and _postprocess_mnmx:
```
processdict = {'newt' : {'dualprocess' : am._process_mnmx,
'singleprocess' : None,
'postprocess' : am._postprocess_mnmx,
'NArowtype' : 'numeric',
'MLinfilltype' : 'numeric'}}
```
Note that these processing functions won't be applied when 'newt' is assigned as a root category to a column in assigncat, unless the category is also populated as an entry to one of the associated family tree primitives in the transformdict entry.
Note that all of the processing functions can be omitted or populated with values of None, as may be desired when the category is primarily intended for use as a root category and not a tree category. (If in such case the category is applied as a tree category when accessed no transforms will be applied and no downstream offspring will be inspected when applicable).
Optionally, some additional values can be incorporated into the processdict to
support inversion for a transformation category:
```
#for example
processdict = {'newt' : {'dualprocess' : am._process_mnmx,
'singleprocess' : None,
'postprocess' : am._postprocess_mnmx,
'inverseprocess' : am._inverseprocess_mnmx,
'info_retention' : True,
'NArowtype' : 'numeric',
'MLinfilltype' : 'numeric'}}
#Where 'inverseprocess' is a function to invert the forward pass transformation.
#And 'info_retention' is boolean to signal True when there is full information retention
#in recovered data from inversion.
```
Optionally, a user can set alternate default assignparam parameters to be passed to the associated
transformation functions by including the 'defaultparams' key. These updates to default
parameters will still be overwritten if user manually specifies parameters in assignparam.
```
#for example to default to an alternate noise profile for DPmm
processdict = {'DLmm' : {'dualprocess' : am._process_DPmm,
'singleprocess' : None,
'postprocess' : am._postprocess_DPmm,
'inverseprocess' : am._inverseprocess_UPCS,
'info_retention' : True,
'defaultparams' : {'noisedistribution' : 'laplace'},
'NArowtype' : 'numeric',
'MLinfilltype' : 'numeric'}}
```
Since specification of transformation functions and other processdict entries can be kind of cumbersome in order
to dig out from the codebase naming conventions e.g. for internally defined functions, a
simplification is available when populating a processdict for a user passed entry by
way of the 'functionpointer' entry. When a functionpointer category entry is included,
the transformation functions and other entries that are not already specified are
automatically populated based on entries found in processdict entries of the pointer.
For cases where a functionpointer points to a processdict entry that itself has a functionpointer
entry, chains of pointers are followed until an entry without functionpointer is reached.
defaultparams entries of each pointer link are also accessed for update, and if the prior category
specification contains any redundant defaultparams entries with those found in a pointer target
category the prior category entries take precedence. Similarly for chains of pointers the entries
specified in nearer links take precedence over entries further down the chain.
In other words, if you are populating a new processdict transformation
category and you want the transformation functions and other entries to match an existing category, you
can simply pass the existing category as a functionpointer entry to the new category.
Here is an example if we want to match the DLmm category demonstrated above for a new
category 'newt' but with an alternate 'NArowtype' as an arbitrary example, such as would be useful if we
wanted to define an alternate DLmm family tree in a corresponding newt transformdict entry.
```
processdict = {'newt' : {'functionpointer' : 'DLmm',
'NArowtype' : 'positivenumeric'}}
```
Or an even simpler approach if no overwrites are desired could just be to copy everything.
```
processdict = {'newt' : {'functionpointer' : 'DLmm'}}
```
We can also use functionpointer when overwriting a category defined internal to library. For
example, if we wanted to change the default parameters applied with the mnmx category, we
could overwrite the mnmx process_dict entry such as to match the current entry but with
updated defaultparams.
```
processdict = {'mnmx' : {'functionpointer' : 'mnmx',
'defaultparams' : {'floor' : True}}}
```
Note that processdict entries can be defined to overwrite existing category entries defined in the internal library.
For example, if we wanted our default numerical scaling to be by min-max instead of z-score normalization, one way we could accomplish
this is to overwrite the 'nmbr' transformation functions accessed from processdict, where nmbr is the default root category applied to
numeric sets under automation, whose family tree has nmbr as a tree category entry for accessing the transformation functions.
(Other default root categories under automation are detailed further below in the
"[Default Tranformations](https://github.com/Automunge/AutoMunge#default-transformations)" section.) This approach differs
from overwriting the nmbr transformdict entry as demonstrated above in that the update would be carried through to all instances where nmbr is
accessed as a tree category across the library of family trees.
```
processdict = {'nmbr' : {'functionpointer' : 'mnmx'}}
```
Processing functions following the conventions of those defined internal to the library
can be passed to dualprocess / singleprocess / postprocess / inverseprocess
Or for the greatly simplified conventions available
for custom externally defined transformation functions
can be passed to custom_train / custom_test / custom_inversion.
Demonstrations for custom transformation functions are documented further below in the
section Custom Transformation Functions. (Note that in cases of redundancy, populated
custom_train functions take precedence over the dualprocess / singleprocess conventions).
Note that the defaultinfill option is specific to the custom_train convention and also documented below.
Note that many of the transformation functions in the library have support for distinguishing between
inplace operations vs returning a column copied from the input. Inplace operations are expected to
reduce memory overhead. When not specified the library assumes a function supports the inplace option. Function passed in the custom_train convention automatically support inplace so specification is not required with user defined functions. For functions following the dualprocess/singleprocess conventions, some transforms may not support inplace, in which case a user will need to specify (although if using functionpointer to access the transforms this will be automatic).
```
#for example
processdict = {'newt' : {'dualprocess' : am._process_text,
'singleprocess' : None,
'postprocess' : am._postprocess_text,
'inverseprocess' : am._inverseprocess_text,
'info_retention' : True,
'inplace_option' : False,
'NArowtype' : 'justNaN',
'MLinfilltype' : 'multirt'}}
```
The optional labelctgy specification for a category's processdict entry is intended for use in featureselection when the category is applied as a root category to a label set and the category's family tree returns the labels in multiple configurations. The labelcty entry serves as a specification of a specific primitive entry category either as entered in the upstream primitives of the root category or one of the downstream primitives of subsequent generations, which primitive entry category will serve as the label basis when applying feature selection. (labelctgy is also inspected with oversampling in current implementation.)
Further detail on the processdict data format provided in the essay [Data Structure](https://medium.com/automunge/data-structure-59e52f141dd6).
* evalcat: modularizes the automated evaluation of column properties for assignment
of root transformation categories, allowing user to pass custom functions for this
purpose. Passed functions should follow format:
```
def evalcat(df, column, randomseed, eval_ratio, numbercategoryheuristic, powertransform, labels = False):
"""
#user defined function that takes as input a dataframe df and column id string column
#evaluates the contents of cells and classifies the column for root category of
#transformation (e.g. comparable to categories otherwise assigned in assigncat)
#returns category id as a string
"""
...
return category
```
And could then be passed to automunge function call such as:
```
evalcat = evalcat
```
I recommend using the \_evalcategory function defined in master file as starting point.
(Minus the 'self' parameter since defining external to class.) Note that the
parameters eval_ratio, numbercategoryheuristic, powertransform, and labels are passed as user
parameters in automunge(.) call and only used in \_evalcategory function, so if user wants
to repurpose them totally can do so. (They default to .5, 255, False, False.) Note evalcat
defaults to False to use built-in \_evalcategory function. Note evalcat will only be
applied to columns not assigned in assigncat. (Note that columns assigned to 'eval' / 'ptfm'
in assigncat will be passed to this function for evaluation with powertransform = False / True
respectively.) Note that function currently uses python collections library and datetime as dt.
* ppd_append: defaults to False, accepts as input a prior populated postprocess_dict for
purposes of adding new features to a prior trained model. Basically the intent is that there
are some specialized workflows where models in decision tree paradigms may have new features
incorporated without retraining the model with the prior training data.
In such cases a user may desire to add new features to a prior populated postprocess_dict to enable
pushbutton preprocessing including the original training data basis coupled with basis of newly added features.
In order to do so, automunge(.) should be called with just the new features passed as df_train, and the prior
populated postprocess_dict passed to ppd_append. This will result in the newly populated postprocess_dict being saved
as a new subentry in the returned original postprocess_dict, such that to prepare additional data including the original
features and new features, they combined features can be colletively passed as df_test to postmunge(.) (which should
have new features appended on right side of original features). postmunge(.) will prepare the original features
and new features seperately, including a seperate basis for ML infill, Binary, and etc, and will return a
combined prepared test data. Includes inversion support and support for performing more than one round of new
feature appendings. Note that newly added features are
limited to training features, labels and ID input should be excluded. Note that inversion numpy support not available with
combined features and test feature inversion support is limited to the inversion='test' case. (If it is desired to include
new features in the prior features' ML infill basis and visa versa, instead of applying ppd_append just pass everything
to automunge(.) and populate a new postprocess_dict - noting this might justify retraining the original model due to
a new ML infill basis of original features). (Note that when applied in conjunction with entropy_seeding for noise injection the same seeds will be applied with each set, for sampling_type's other than default we recommend sampling internally with a custom generator as opposed to passing externally sampled seeds.). Please note that ppd_append not supported in conjunction with activating dupl_rows postmunge parameter.
* entropy_seeds: defaults to False, accepts integer or list / flattened array of integers which may serve as supplemental sources of entropy for noise injections with DP transforms, we suggest integers in range {0:(2 \*\* 31 - 1)} to align with int32 dtype. entropy_seeds are specific to an automunge(.) or postmunge(.) call, in other words they are not returned in the populated postprocess_dict. Please note that for determinatino of how many entropy seeds are needed for various sampling_dict['sampling_type'] scenarios, can inspect postprocess_dict['sampling_report_dict'], where if insufficient seeds are available for these scenarios additional seeds will be derived with the extra_seed_generator. Note that the sampling_report_dict will report requirements separately for train and test data and in the bulk_seeds case will have a row count basis. (If not passing test data to automunge(.) the test budget can be omitted.) Note that the entropy seed budget only accounts for preparing one set of data, for the noise_augment option we recommend passing a custom extra_seed_generator with a sampling_type specification, which will result in internal samplings of additional entropy seeds for each additional noise_augment duplicate (or for the bulk_seeds case with external sampling can increased entropy_seed budget proportional to the number of additional duplicates with noise).
* random_generator: defaults to False, accepts numpy.random.Generator formatted random samplers which are applied for noise injections with DP transforms. Note that random_generator may optionally be applied in conjunction with entropy_seeds. When not specified applies numpy.random.PCG64. Examples of alternate generators could be a generator initialized with the [QRAND](https://github.com/pedrorrivero/qrand) library to sample from a quantum circuit. Or if the alternate library does not have numpy.random support, their output can be channeled as entropy_seeds for a similar benefit. random_generator is specific to an automunge(.) or postmunge(.) call, in other words it is not returned in the populated postprocess_dict. Please note that numpy formatted generators of both forms e.g. np.random.PCG64 or np.random.PCG64() may be passed, in the latter case any entropy seeding to this generator will be turned off automatically.
* sampling_dict: defaults to False, accepts a dictionary including possible keys of {sampling_type, seeding_type, sampling_report_dict, stochastic_count_safety_factor, extra_seed_generator, sampling_generator}. sampling_dict is specific to an automunge(.) or postmunge(.) call, in other words they are not returned in the populated postprocess_dict.
- sampling_dict['sampling_type'] accepts a string as one of {'default', 'bulk_seeds', 'sampling_seed', 'transform_seed'}
- default: every sampling receives a common set of entropy_seeds per user specification which are shuffled and passed to each call
- bulk_seeds: every sampling receives a unique supplemental seed for every sampled entry for sampling from sampling_generator (expended seed counts dependent on train/test/both configuration and numbers of rows). This scenario also defaults to sampling_dict['seeding_type'] = 'primary_seeds'
- sampling_seed: every sampling operation receives one supplemental seed for sampling from sampling_generator (expended seed counts dependent on train/test/both configuration)
- transform_seed: every noise transform receives one supplemental seed for sampling from sampling_generator (expended seed counts are the same independant of train/test/both configuration)
- sampling_dict['seeding_type'] defaults to 'supplemental_seeds' or 'primary_seeds' as described below, where 'supplemental_seeds' means that entropy seeds are integrated into np.random.SeedSequence with entropy seeding from the operating system. Also accepts 'primary_seeds', in which user passed entropy seeds are the only source of seeding. Please note that 'primary_seeds' is used as the default for the bulk_seeds sampling_type and 'supplemental_seeds' is used as the default for other sampling_type options.
- sampling_dict['sampling_report_dict'] defaults as False, accepts a prior populated postprocess_dict['sampling_report_dict'] from an automunge(.), call if this is not received it will be generated internally. sampling_report_dict is a resource for determining how many entropy_seeds are needed for various sampling_type scnearios.
- sampling_dict['stochastic_count_safety_factor']: defaults to 0.15, accepts float 0-1, is associated with the bulk_seeds sampling_type case and is used as a multiplier for number of seeds populated for sampling operations with a stochastic number of entries
- sampling_dict['sampling_generator']: used to specify which generator will be used for sampling operations other than generation of additional entropy_seeds. defaults to 'custom' (meaning the passed random_generator or when unspecified the default PCG64), and accepts one of {'custom', 'PCG64', 'MersenneTwister'}
- sampling_dict['extra_seed_generator']: used to specify which generator will be used to sample additional entropy_seeds when more are needed to meet requirements of sampling_report_dict, defaults to 'custom' (meaning the passed random_generator or when unspecified the default PCG64), and accepts one of {'custom', 'PCG64', 'MersenneTwister', 'off', 'sampling_generator'}, where sampling_generator matches specification for sampling_generator, and 'off' turns off sampling of additional entropy seeds.
* privacy_encode: a boolean marker _{True, False, 'private'}_ defaults to False. For cases where sets
are returned as pandas dataframe, a user may desire privacy preserving encodings in which
column headers of received data are anonymized. This parameter when activated as True shuffles the order of columns and
replaces headers and suffixes with integers. ID sets are not anonymized. Label sets are only anonymized in the 'private' scenario. Note that conversion information is available in returned postprocess_dict under
privacy reports (in other words, privacy can be circumvented if user has access to an unencrypted postprocess_dict).
When activated the postprocess_dict returned columntype_report captures the privacy encodings and the column_map is erased.
Note that when activated consistent convention is applied in postmunge and inversion is supported.
When privacy_encode is activated postmunge(.) printstatus is only available as False or 'silent'.
The 'private' option also activates shuffling of rows in train and test data for both automunge(.) and postmunge(.)
and resets the dataframe indexes (although retains the Automunge_index column returned in the ID set).
Thus prepared data in the 'private' option can be kept row-wise anonymous by not sharing the returned ID set.
We recommend considering use of the encrypt_key parameter in conjunction with privacy_encode. Please note that when
privacy_encode is activated postmunge options for featureeval and driftreport are not available to avoid data leakage channel.
It may be beneficial in privacy sensitive applications to inject noise via DP transforms and apply distribution conversions to
numeric features e.g. via DPqt or DPbx. Further detail on privacy encoding provided in the essay [Private Encodings with Automunge](https://medium.com/automunge/private-encodings-with-automunge-f73dcdb57289).
* encrypt_key: as one of {False, 16, 24, 32, bytes} (where bytes means a bytes type object with length of 16, 24, or 32) defaults to False, other scenarios all result in an encryption of the returned postprocess_dict. 16, 24, and 32 refer to the block size, where block size of 16 aligns with 128 bit encryption, 32 aligns with 256 bit. When encrypt_key is passed as an integer, a returned encrypt_key is derived and returned in the closing printouts. This returned printout should be copied and saved for use with the postmunge(.) encrypt_key parameter. In other words, without this encryption key, user will not be able to prepare additional data in postmunge(.) with the returned postprocess_dict. When encrypt_key is passed as a bytes object (of length 16, 24, or 32), it is treated as a user specified encryption key and not returned in printouts. When data is encrypted, the postprocess_dict returned from automunge(.) is still a dictionary that can be downloaded and uploaded with pickle, and based on which scenario was selected by the privacy_encode parameter (for scenarios other than 'private'), the returned postprocess_dict will contain some public entries that are not encrypted, such as ['columntype_report', 'label_columntype_report', 'privacy_encode', 'automungeversion', 'labelsencoding_dict', 'FS_sorted', 'column_map', 'sampling_report_dict'] - where FS_sorted and column_map are ommitted when privacy_encode is not False and all public entries are omitted when privacy_encode = 'private'. The encryption key, as either returned in printouts or based on user specification, can then be passed to the postmunge(.) encrypt_key parameter to prepare additional data. The only postmunge operation available without the encryption key is for label inverison (unless privacy_encode is 'private'). Thus privacy_encode may be fully private, and a user with access to the returned postprocess_dict will not be able to invert training data without the encryption key. Please note that the AES encryption is applied with the [pycrypto](https://github.com/pycrypto/pycrypto) python library which requires installation in order to run (we found there were installations available via conda install).
* printstatus: user can pass _True/False/'summary'/'silent'_ indicating whether the function will print
status of processing during operation. Defaults to 'summary' to return a summary of returned sets and any feature importance or drift reports. True returns all printouts. When False only error
message printouts generated. When 'summary' only reports and summary are printed. When 'silent' no printouts are generated. Note that all of these scenarios are also available by the logger parameter regardless of printstatus setting.
* logger: user can initialize a dictionary externally, e.g. logger={}, and pass it to this parameter, e.g. logger=logger. automunge(.) will then log every printout scenario and validation result as they are being accessed in this external dictionary, which can then either be inspected for troubleshooting in cases of a halt scenario or archived. The report scenarios are loosely aligned with python logging module and also related to the tiers of printstatus.
```
logger = {}
train, train_ID, labels, \
val, val_ID, val_labels, \
test, test_ID, test_labels, \
postprocess_dict = \
am.automunge(df_train,
logger=logger,
printstatus='silent')
#and then, e.g.
print(logger['debug_report'])
print(logger['info_report'])
print(logger['warning_report'])
#or validation results available in logger['validations']
```
Ok well we'll demonstrate further below how to build custom transformation functions,
for now you should have sufficient tools to build sets of transformation categories
using the family tree primitives and etc.
...
# postmunge(.)
The postmunge(.) function is intended to consistently prepare subsequently available
and consistently formatted train or test data with just a single function call. It
requires passing the postprocess_dict object returned from the original application
of automunge and that the passed test data have consistent column header labeling as
the original train set (or for Numpy arrays consistent order of columns). Processing
data with postmunge(.) is considerably more efficient than automunge(.) since it does
not require the overhead of the evaluation methods, the derivation of transformation
normalization parameters, and/or the training of models for ML infill.
```
#for postmunge(.) function to prepare subsequently available data
#using the postprocess_dict object returned from original automunge(.) application
#Remember to initialize automunge
from Automunge import *
am = AutoMunge()
#Then we can run postmunge function as:
test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict, df_test,
testID_column = False,
pandasoutput = 'dataframe', printstatus = 'summary', inplace = False,
dupl_rows = False, TrainLabelFreqLevel = False,
featureeval = False, traindata = False, noise_augment = 0,
driftreport = False, inversion = False,
returnedsets = True, shuffletrain = False,
entropy_seeds = False, random_generator = False, sampling_dict = False,
randomseed = False, encrypt_key = False, logger = {})
```
Or to run postmunge(.) with default parameters we simply need the postprocess_dict
object returned from the corresponding automunge(.) call and a consistently formatted
additional data set.
```
test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict, df_test)
```
## postmunge(.) returned sets:
Here now are descriptions for the returned sets from postmunge, which
will be followed by descriptions of the parameters which can be passed to
the function. Default is that returned sets are pandas dataframes, with
single column sets returned as pandas series.
For dataframes, data types of returned columns are based on the transformation applied,
for example columns with boolean integers are cast as int8, ordinal encoded
columns are given a conditional type based on the size of encoding space as either
uint8, uint16, or uint32. Continuous sets are cast as float16, float32, or float64
based on the automunge(.) floatprecision parameter. And direct passthrough columns
via excl transform retain the received data type.
* test: the set of features, consistently encoded and normalized as the
training data, that can be used to generate predictions from a model
trained with the train set from automunge.
* test_ID: the set of ID values corresponding to the test set. Also included
in this set is a derived column titled 'Automunge_index',
this column serves as an index identifier for order of rows as they were
received in passed data, such as may be beneficial when data is shuffled.
For more information please refer to writeup for the testID_column parameter.
If the received df_test had a non-ranged integer index,
it is extracted and returned in this set.
* test_labels: a set of numerically encoded labels corresponding to the
test set if a label column was passed. Note that the function
assumes the label column is originally included in the train set. Note
that if the labels set is a single column a returned dataframe is flattened
to a pandas Series or a returned Numpy array is also
flattened (e.g. [[1,2,3]] converted to [1,2,3] ).
* postreports_dict: a dictionary containing entries for following:
- postreports_dict['featureimportance']: results of optional feature
importance evaluation based on parameter featureeval. (See automunge(.)
notes above for feature importance printout methods.)
- postreports_dict['finalcolumns_test']: list of columns returned from
postmunge
- postreports_dict['driftreport']: results of optional drift report
evaluation tracking properties of postmunge data in comparison to the
original data from automunge call associated with the postprocess_dict
presumably used to train a model. Results aggregated by entries for the
original (pre-transform) list of columns, and include the normalization
parameters from the automunge call saved in postprocess_dict as well
as the corresponding parameters from the new data consistently derived
in postmunge
- postreports_dict['sourcecolumn_drift']: results of optional drift report
evaluation tracking properties of postmunge data derived from source
columns in comparison to the original data from automunge(.) call associated
with the postprocess_dict presumably used to train a model.
- postreports_dict['pm_miscparameters_results']: reporting results of validation tests performed on parameters and passed data
```
#the results of a postmunge driftreport assessment are returned in the postreports_dict
#object returned from a postmunge call, as follows:
postreports_dict = \
{'featureimportance':{(not shown here for brevity)},
'finalcolumns_test':[(derivedcolumns)],
'driftreport': {(sourcecolumn) : {'origreturnedcolumns_list':[(derivedcolumns)],
'newreturnedcolumns_list':[(derivedcolumns)],
'drift_category':(category),
'orignotinnew': {(derivedcolumn):{'orignormparam':{(stats)}},
'newnotinorig': {(derivedcolumn):{'newnormparam':{(stats)}},
'newreturnedcolumn':{(derivedcolumn):{'orignormparam':{(stats)},
'newnormparam':{(stats)}}}},
'rowcount_basis': {'automunge_train_rowcount':#, 'postmunge_test_rowcount':#},
'sourcecolumn_drift': {'orig_driftstats': {(sourcecolumn) : (stats)},
'new_driftstats' : {(sourcecolumn) : (stats)}}}
#the driftreport stats for derived columns are based on the normalization_dict entries from the
#corresponding processing function associated with that column's derivation
#here is an example of source column drift assessment statistics for a positive numeric root category:
postreports_dict['sourcecolumn_drift']['new_driftstats'] = \
{(sourcecolumn) : {'max' : (stat),
'quantile_99' : (stat),
'quantile_90' : (stat),
'quantile_66' : (stat),
'median' : (stat),
'quantile_33' : (stat),
'quantile_10' : (stat),
'quantile_01' : (stat),
'min' : (stat),
'mean' : (stat),
'std' : (stat),
'MAD' : (stat),
'skew' : (stat),
'shapiro_W' : (stat),
'shapiro_p' : (stat),
'nonpositive_ratio' : (stat),
'nan_ratio' : (stat)}}
```
...
## postmunge(.) passed parameters
```
#for postmunge(.) function on subsequently available test data
#using the postprocess_dict object returned from original automunge(.) application
#Remember to initialize automunge
from Automunge import *
am = AutoMunge()
#Then we can run postmunge function as:
test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict, df_test,
testID_column = False,
pandasoutput = 'dataframe', printstatus = 'summary', inplace = False,
dupl_rows = False, TrainLabelFreqLevel = False,
featureeval = False, traindata = False, noise_augment = 0,
driftreport = False, inversion = False,
returnedsets = True, shuffletrain = False,
entropy_seeds = False, random_generator = False, sampling_dict = False,
randomseed = False, encrypt_key = False, logger = {})
```
* postprocess_dict: this is the dictionary returned from the initial
application of automunge(.) which included normalization parameters to
facilitate consistent processing of additional train or test data to the
original processing of the train set. This requires a user to remember
to download the dictionary at the original application of automunge,
otherwise if this dictionary is not available a user can feed this
subsequent test data to the automunge along with the original train data
exactly as was used in the original automunge(.) call.
* df_test: a pandas dataframe or numpy array containing a structured
dataset intended for use to generate predictions from a machine learning
model trained from the automunge returned sets. The set must be consistently
formatted as the train set with consistent order of columns and if labels are
included consistent labels. If desired the set may include an ID column. The
tool supports the inclusion of non-index-range column as index or multicolumn
index (requires named index columns). Such index types are added to the
returned "ID" sets which are consistently shuffled and partitioned as the
train and test sets. If numpy array passed any ID columns from train set should
be included. Note that if a label column is included consistent with label column from
automunge(.) call it will be automatically applied as label and similarly for ID columns.
If desired can also be passed as a dataframe with only the label columns and features ommitted.
* testID_column: defaults to False, user can pass a column header or list of column headers
for columns that are to be segregated from the df_test set for return in the test_ID
set (consistently shuffled and partitioned when applicable). For example this may
be desired for an index column or any other column that the user wishes to exclude from
the ML infill basis. Defaults to False, which can be used for cases where the df_test
set does not contain any ID columns, or may also be passed as the default of False when
the df_test ID columns match those passed to automunge(.) in the trainID_column parameter,
in which case they are automatically given comparable treatment. Thus, the primary intended use
of the postmunge(.) testID_column parameter is for cases where a df_test has ID columns
different from those passed with df_train in automunge(.). Note that an integer column index
or list of integer column indexes may also be passed such as if the source dataset was a numpy array.
(In general though when passing data as numpy arrays we recommend matching ID columns to df_train.) In cases of unnamed
non-range integer indexes, they are automatically extracted and returned in the ID sets as 'Orig_index'.
If a user would like to include a column both in the features for encoding and the ID sets for original form
retention, they can pass testID_column as a list of two lists, e.g. [list1, list2], where the first
list may include ID columns to be struck from the features and the second list may include ID columns
to be retained in the features. (We recommend only using testID_column specification for cases where df_test
includes columns that weren't present in the original df_train, otehrwise it is automatic.)
* pandasoutput: selects format of returned sets. Defaults to _'dataframe'_
for returned pandas dataframe for all sets. Dataframes index is not always preserved, non-integer indexes are extracted to the ID sets,
and automunge(.) generates an application specific range integer index in ID sets
corresponding to the order of rows as they were passed to function). If set to _True_, features and ID sets are comparable, and single column label sets are converted to Pandas Series instead of dataframe. If set to _False_
returns numpy arrays instead of dataframes. Note that the dataframes will have column
specific data types, or returned numpy arrays will have a single data type.
* printstatus: user can pass _True/False/'summary'/'silent'_ indicating whether the function will print
status of processing during operation. Defaults to 'summary' to return a summary of returned sets and any feature importance or drift reports. True returns all printouts. When False only error
message printouts generated. When 'summary' only reports and summary are printed. When 'silent' no printouts are generated.
* inplace: defaults to False, when True the df_test passed to postmunge(.)
is overwritten with the returned test set. This reduces memory overhead.
For example, to take advantage with reduced memory overhead you could call postmunge(.) as:
```
df_test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict, df_test, inplace = True)
```
* dupl_rows: can be passed as _(True/False\)_ which indicates
if duplicate rows will be consolidated to single instance in returned sets. (In
other words, if same row included more than once, it will only be returned once.)
Defaults to False for not activated. True applies consolidation to test set. Note
this is applied prior to TrainLabelFreqLevel if elected. As implemented this does
not take into account duplicate rows in test data which have different labels,
only one version of features/label pair is returned. Please note dupl_rows option
not recommended in cases where automunge(.) applied the ppd_append option
and will return a printout and validation result as dupl_rows_ppd_append_postmunge_valresult.
* TrainLabelFreqLevel: a boolean identifier _(True/False)_ which indicates
if the TrainLabelFreqLevel method will be applied to oversample test
data associated with underrepresented labels. The method adds multiples
to test data rows for those labels with lower frequency resulting in
an (approximately) levelized frequency. This defaults to False. Note that
this feature may be applied to numerical label sets if the assigncat processing
applied to the set in automunge(.) had included aggregated bins, such
as for example 'exc3' for pass-through numeric with standard deviation bins,
or 'exc4' for pass-through numeric with powers of ten bins. Note this
method requires the inclusion of a designated label column. Further detail
on oversampling provided in the essay [Oversampling with Automunge](https://medium.com/automunge/oversampling-with-automunge-3e69e500a32e).
* featureeval: a boolean identifier _(True/False)_ to activate a feature
importance evaluation, comparable to one performed in automunge but based on the
test set passed to postmunge. Defaults to False. The results are returned in the
postreports_dict object returned from postmunge as postreports_dict['featureimportance'].
The results will also be printed out if printstatus is activated. Note that sorted
feature importance results are returned in postreports_dict['FS_sorted'], including
columns sorted by metric and metric2. Relies on ML_cmnd parameters from original
automunge(.) call.
* driftreport: defaults to False, accepts one of {False, True, 'efficient', 'report_effic', 'report_full'}.
Activates a drift report evaluation, in which drift statistics are collected
for comparison between features in the train data that was passed to automunge(.) verses test data
passed to postmunge(.). May include drift statistics associated with the raw data found
in the input features, and may also include drift statistics associated with the returned
data derived features as collected during derivations and recorded in the normalization
parameters of a transformation. The results are returned in the
postreports_dict object returned from postmunge as postreports_dict['driftreport'] and postreports_dict['sourcecolumn_drift'].
Additional drift statistics for columns returned from a PCA or Binary dimensionality reduction are
available in conjunction with the driftreport = True scenario, which are returned in postreports_dict['dimensionality_reduction_driftstats'].
The results will also be printed out if printstatus is activated. Defaults to _False_, and:
- _False_ means no postmunge drift assessment is performed
- _True_ means an assessment is performed for both the source column and derived column
stats
- _'efficient'_ means that a postmunge drift assessment is only performed on the source
columns (less information but better latency / computational efficiency)
- _'report_effic'_ means that the efficient assessment is performed (only source column stats) and returned with
no processing of data
- _'report_full'_ means that the full assessment is performed for both the source column and derived column
and returned with no processing of data
Note that for transforms returning multi column sets, the drift stats will only be reported for first
column in the categorylist. Note that driftreport is not available in conjunction with privacy encoding.
Further detail on drift reports are provided in the essay [Drift Reporting with Automunge](https://medium.com/automunge/drift-reporting-with-automunge-6a83eecbb253).
* inversion: defaults to False, may be passed as one of {False, 'test', 'labels', 'denselabels', a list, or a set},
where ‘test’ or ‘labels’ activate an inversion operation to recover, by a set of transformations
mirroring the inversion of those applied in automunge(.), the form of test data or labels
data to consistency with the source columns as were originally passed to automunge(.). As further clarification,
passing inversion='test' should be in conjunction with passing df_test = test (where test is a dataframe of train
or test data returned from an automunge or postmunge call), and passing inversion='labels' should be in conjunction
with passing df_test = test_labels (where test_labels is a dataframe of labels or test_labels returned from an
automunge or postmunge call). When inversion is passed as a list, accepts list of source column or returned column
headers for inversion targets. When inversion is passed as a set, accepts a set with single entry of a returned
column header serving as a custom target for the inversion path. (inversion list or set specification not supported when the automunge(.) privacy_encode option was activated.) 'denselabels' is for label set inversion in which
labels were prepared in multiple formats, such as to recover the original form on each basis for comparison (currently supported for single labels_column case).
The inversion operation is supported by the optional process_dict entry 'info_retention' and required for inversion process_dict entry
'inverseprocess' (or 'custom_inversion'). Note that columns are only recovered for those sets in which a path of
inversion was available by these processdict entries. Note that the path of
inversion is prioritized to those returned sets with information retention and availability
of inverseprocess functions. Note that both feature importance and Binary dimensionality
reduction is supported, support is not expected for PCA. Note that recovery of label
sets with label smoothing is supported. Note that during an inversion operation the
postmunge function only considers the parameters postprocess_dict, df_test, inversion,
pandasoutput, and/or printstatus. Note that in an inversion operation the
postmunge(.) function returns three sets: a recovered set, a list of recovered columns, and
a dictionary logging results of the path selection process and validation results. Please note that the general
convention in library is that entries not successfully recovered from inversion may be recorded
corresponding to the imputation value from the forward pass, NaN, or some other transformation function specific convention. Further
details on inversion is provided in the essay [Announcing Automunge Inversion](https://medium.com/automunge/announcing-automunge-inversion-18226956dc).
Here is an example of a postmunge call with inversion.
```
df_invert, recovered_list, inversion_info_dict = \
am.postmunge(postprocess_dict, test_labels, inversion='labels',
pandasoutput=True, printstatus='summary', encrypt_key = False)
```
Here is an example of a process_dict entry with the optional inversion entries included, such
as may be defined by user for custom functions and passed to automunge(.) in the processdict
parameter:
```
process_dict.update({'mnmx' : {'dualprocess' : self.process_mnmx,
'singleprocess' : None,
'postprocess' : self.postprocess_mnmx,
'inverseprocess' : self.inverseprocess_mnmx,
'info_retention' : True,
'NArowtype' : 'numeric',
'MLinfilltype' : 'numeric',
'labelctgy' : 'mnmx'}})
```
* traindata: boolean _{True, False, 'train_no_noise', 'test_no_noise'}_, defaults to False. Only inspected when a transformation
is called that treats train data different than test data (currently only relevant to
DP family of transforms for noise injection to train sets or label smoothing transforms in smth family). When passed
as True treats df_test as a train set for purposes of these specific transforms, otherwise
default of False treats df_test as a test set (which turns off noise injection for DP transforms). As you would expect, 'train_no_noise' and 'test_no_noise' designates data passed to postmunge(.) as train or test data but turns off noise injections.
* noise_augment: accepts type int or float(int) >=0. Defaults to 0. Used to specify
a count of additional duplicates of test data prepared and concatenated with the
original test set. Intended for use in conjunction with noise injection, such that
the increased size of training corpus can be a form of data augmentation.
Takes into account the traindata parameter passed to postmunge(.) for
distinguishing whether to treat the duplicates as train or test data for purposes of noise injections.
Note that injected noise will be uniquely randomly sampled with each duplicate. When noise_augment
is received as a dtype of int, one of the duplicates will be prepared without noise. When
noise_augment is received as a dtype of float(int), all of the duplicates will be prepared
with noise. When shuffletrain is activated the duplicates are collectively shuffled, and can distinguish
between duplicates by the original df_test.shape in comparison to the ID set's Automunge_index.
Please be aware that with large dataframes a large duplicate count may run into memory constraints,
in which case additional duplicates can be prepared in additional postmunge(.) calls. Note that the entropy seed budget only accounts for preparing one set of data, for the noise_augment option with entropy seeding we recommend passing a custom extra_seed_generator with a sampling_type specification, which will result in internal samplings of additional entropy seeds for each additional noise_augment duplicate (or for the bulk_seeds case with external sampling can increase entropy_seed budget proportional to the number of additional duplicates with noise).
* returnedsets: Can be passed as one of _{True, False, 'test_ID', 'test_labels', 'test_ID_labels'}_.
Designates the composition of the sets returned
from a postmunge(.) call. Defaults to True for the full composition of five returned sets.
With other options postmunge(.) only returns a single set, where for False that set consists
of the test set, or for the other options returns the test set concatenated with the ID,
labels, or both. For example:
```
#in default of returnedsets=True, postmunge(.) returns five sets, such as this call:
test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict, df_test, returnedsets = True)
#for other returnedset options, postmunge(.) returns just a single set, the test set:
test = \
am.postmunge(postprocess_dict, df_test, returnedsets = False)
#Note that if you want to access the column labels for an appended ID or labels set,
#They can be accessed in the postprocess_dict under entries for
postprocess_dict['finalcolumns_labels']
postprocess_dict['finalcolumns_trainID']
```
* shuffletrain: can be passed as one of _{True, False}_ which indicates if the rows in
the returned sets will be (consistently) shuffled. This value defaults to False.
* entropy_seeds: defaults to False, accepts integer or list / flattened array of integers which may serve as supplemental sources of entropy for noise injections with DP transforms, we suggest integers in range {0:(2 \*\* 31 - 1)} to align with int32 dtype. entropy_seeds are specific to an automunge(.) or postmunge(.) call, in other words they are not returned in the populated postprocess_dict. Please note that for determinatino of how many entropy seeds are needed for various sampling_dict['sampling_type'] scenarios, can inspect postprocess_dict['sampling_report_dict'], where if insufficient seeds are available for these scenarios additional seeds will be derived with the extra_seed_generator. Note that the sampling_report_dict will report requirements separately for train and test data and in the bulk_seeds case will have a row count basis. (If not passing test data to automunge(.) the test budget can be omitted.) Note that the entropy seed budget only accounts for preparing one set of data, for the noise_augment option we recommend passing a custom extra_seed_generator with a sampling_type specification, which will result in internal samplings of additional entropy seeds for each additional noise_augment duplicate (or for the bulk_seeds case with external sampling can increased entropy_seed budget proportional to the number of additional duplicates with noise).
* random_generator: defaults to False, accepts numpy.random.Generator formatted random samplers which are applied for noise injections with DP transforms. Note that random_generator may optionally be applied in conjunction with entropy_seeds. When not specified applies numpy.random.PCG64. Examples of alternate generators could be a generator initialized with the [QRAND](https://github.com/pedrorrivero/qrand) library to sample from a quantum circuit. Or if the alternate library does not have numpy.random support, their output can be channeled as entropy_seeds for a similar benefit. random_generator is specific to an automunge(.) or postmunge(.) call, in other words it is not returned in the populated postprocess_dict. Please note that numpy formatted generators of both forms e.g. np.random.PCG64 or np.random.PCG64() may be passed, in the latter case any entropy seeding to this generator will be turned off automatically.
* sampling_dict: defaults to False, accepts a dictionary including possible keys of {sampling_type, seeding_type, sampling_report_dict, stochastic_count_safety_factor, extra_seed_generator, sampling_generator}. sampling_dict is specific to an automunge(.) or postmunge(.) call, in other words they are not returned in the populated postprocess_dict.
- sampling_dict['sampling_type'] accepts a string as one of {'default', 'bulk_seeds', 'sampling_seed', 'transform_seed'}
- default: every sampling receives a common set of entropy_seeds per user specification which are shuffled and passed to each call
- bulk_seeds: every sampling receives a unique supplemental seed for every sampled entry for sampling from sampling_generator (expended seed counts dependent on train/test/both configuration and numbers of rows). This scenario also defaults to sampling_dict['seeding_type'] = 'primary_seeds'
- sampling_seed: every sampling operation receives one supplemental seed for sampling from sampling_generator (expended seed counts dependent on train/test/both configuration)
- transform_seed: every noise transform receives one supplemental seed for sampling from sampling_generator (expended seed counts are the same independant of train/test/both configuration)
- sampling_dict['seeding_type'] defaults to 'supplemental_seeds' or 'primary_seeds' as described below, where 'supplemental_seeds' means that entropy seeds are integrated into np.random.SeedSequence with entropy seeding from the operating system. Also accepts 'primary_seeds', in which user passed entropy seeds are the only source of seeding. Please note that 'primary_seeds' is used as the default for the bulk_seeds sampling_type and 'supplemental_seeds' is used as the default for other sampling_type options.
- sampling_dict['sampling_report_dict'] defaults as False, accepts a prior populated postprocess_dict['sampling_report_dict'] from an automunge(.), call if this is not received it will be generated internally. sampling_report_dict is a resource for determining how many entropy_seeds are needed for various sampling_type scnearios.
- sampling_dict['stochastic_count_safety_factor']: defaults to 0.15, accepts float 0-1, is associated with the bulk_seeds sampling_type case and is used as a multiplier for number of seeds populated for sampling operations with a stochastic number of entries
- sampling_dict['sampling_generator']: used to specify which generator will be used for sampling operations other than generation of additional entropy_seeds. defaults to 'custom' (meaning the passed random_generator or when unspecified the default PCG64), and accepts one of {'custom', 'PCG64', 'MersenneTwister'}
- sampling_dict['extra_seed_generator']: used to specify which generator will be used to sample additional entropy_seeds when more are needed to meet requirements of sampling_report_dict, defaults to 'custom' (meaning the passed random_generator or when unspecified the default PCG64), and accepts one of {'custom', 'PCG64', 'MersenneTwister', 'off', 'sampling_generator'}, where sampling_generator matches specification for sampling_generator, and 'off' turns off sampling of additional entropy seeds.
* randomseed: defaults as False, also accepts integers within 0:2\*\*31-1. When not specified, randomseed is based on a uniform randomly sampled integer within that range using an entropy_seeds when available.
This value is used as the postmunge(.) seed of randomness for operations that don't require matched random seeding to automunge(.).
* encrypt_key: when the postprocess_dict was encrypted by way of the corresponding automunge(.) encrypt_key parameter, a key is either derived and returned in the closing automunge(.) printouts, or a key is based on user specification. To prepare additional data in postmunge(.) with the encrypted postprocess_dict requires passing that key to the postmunge(.) encrypt_key parameter. Defaults to False for when encryption was not performed, other accepts a bytes type object with expected length of 16, 24, or 32. Please note that the AES encryption is applied with the [pycrypto](https://github.com/pycrypto/pycrypto) python library which requires installation in order to run (we found there were installations available via conda install).
* logger: user can initialize a dictionary externally (e.g. logger={}) and then pass it to this parameter (e.g. logger=logger). postmunge(.) will then log every printout scenario and validation result as they are being accessed in this external dictionary, which can then either be inspected for troubleshooting in cases of a halt scenario or archived. The report scenarios are loosely aligned with python logging module and also related to the tiers of printstatus.
```
logger = {}
test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict,
df_test,
logger=logger,
printstatus='silent')
#and then, e.g.
print(logger['debug_report'])
print(logger['info_report'])
print(logger['warning_report'])
#or validation results available in logger['validations']
```
## Default Transformations
When root categories of transformations are not assigned for a given column in
assigncat, automunge performs an evaluation of data properties to infer
appropriate means of feature engineering and numerical encoding. The default
categories of transformations are as follows:
- nmbr: for numeric data, columns are treated with z-score normalization. If
binstransform parameter was activated this will be supplemented by a collection
of bins indicating number of standard deviations from the mean. Note that default infill
performed prior to ML infill is imputation with negative zero. The exception is for
numeric data received in a column with pandas 'categoric' data type, which are instead binarized
consistent to categoric sets (as 1010 or bnry). Note that numerical sets with 2 unique values in train
set default to bnry. Note that features with majority str(int/float) entries are also treated as numeric.
- 1010: for categorical data excluding special cases described following, columns are
subject to binarization encoding via '1010' (e.g. for majority str or bytes type entries). If the
number of unique entries in the column exceeds the parameter 'numbercategoryheuristic'
(which defaults to 255), the encoding will instead be by hashing. Note that for default
infill missing data has a distinct representation in the encoding space. Note that features with
majority str(int/float) entries are treated as numeric.
- bnry: for categorical data of <=2 unique values excluding infill (e.g. NaN), the
column is encoded to 0/1. Note that numerical sets with 2 unique values in train
set also default to bnry.
- hsh2: for categorical data, if the number of unique entries in the column exceeds
the parameter 'numbercategoryheuristic' (which defaults to 255), the encoding will
instead be by 'hsh2' which is an ordinal (integer) encoding based on hashing.
hsh2 is excluded from ML infill.
- hash: for all unique entry categoric sets (based on sets with >75% unique entries),
the encoding will be by hash which extracts distinct words within entries returned in
a set of columns with an integer hashing. hash is excluded from ML infill. Note that for edge
cases with large string entries resulting in too high dimensionality, the max_column_count
parameter can be passed to default_assignparam in assignparam to put a cap on returned column count.
- dat6: for time-series data, a set of derivations are performed returning
'year', 'mdsn', 'mdcs', 'hmss', 'hmsc', 'bshr', 'wkdy', 'hldy' (these are defined
in next section)
- null: for columns without any valid values in training set (e.g. all NaN) column is deleted
For label sets, we use a distinct set of root categories under automation. These are in
some cases comparable to those listed above for training data, but differ in that the label
sets will not include a returned 'NArw' (infill marker) even when parameter NArw_marker
passed as True.
- lbnb: for numerical data, a label set is treated with an 'nmbr' z-score normalization.
- lbor: for categoric data of >2 unique values, a label set is treated with an ordinal encoding similar to 'ord3' ordinal encoding (frequency sorted order of encodings). lbor differs from ord3 in that missing data does not receive a distinct encoding and is instead grouped into the 0 activation (consistent with the ord3 parameter setting null_activation=False).
- lbbn: for categoric data of <3 unique values, a label set is treated with an 'bnry' binary encoding (single column binary), also applied to numeric sets with 2 unique values
Other label categories are available for assignment in assigncat, described below in the
library of transforms section for label set encodings.
Note that if a user wishes to avoid the automated assignment of default transformations,
such as to leave those columns not specifically assigned to transformation categories in
assigncat as unchanged, the powertransform parameter may be passed as values 'excl' or
'exc2', where for 'excl' columns not explicitly assigned to a root category in assigncat
will be left untouched, or for 'exc2' columns not explicitly assigned to a root category
in assigncat will be forced to numeric and subject to default modeinfill. (These two excl
arguments may be useful if a user wants to experiment with specific transforms on a
subset of the columns without incurring processing time of an entire set.) This option may
interfere with ML infill if data is not all numerically encoded.
If the data is already numerically encoded with NaN entries for missing data, ML infill
can be applied without further preprocessing transformations by passing powertransform = 'infill'.
Note that for columns designated for label sets as a special case categorical data will
default to 'ordl' (ordinal encoding) instead of '1010'. Also, numerical data will default
to 'excl2' (pass-through) instead of 'nmbr'.
- powertransform: if the powertransform parameter is activated, a statistical evaluation
will be performed on numerical sets to distinguish between columns to be subject to
bxcx, nmbr, or mnmx. Please note that we intend to further refine the specifics of this
process in future implementations. Additionally, powertransform may be passed as values 'excl'
or 'exc2', where for 'excl' columns not explicitly assigned to a root category in assigncat
will be left untouched, or for 'exc2' columns not explicitly assigned to a root category in
assigncat will be forced to numeric and subject to default modeinfill. (These two excl
arguments may be useful if a user wants to experiment with specific transforms on a subset of
the columns without incurring processing time of an entire set for instance.) To default to
noise injection to numeric and (non-hashed) categoric, can apply 'DP1' or 'DP2', (or 'DT1','DT2', 'DB1', 'DB2').
- floatprecision: parameter indicates the precision of floats in returned sets (16/32/64)
such as for memory considerations.
In all cases, if the parameter NArw_marker is activated returned sets will be
supplemented with a NArw column indicating rows that were subject to infill. Each
transformation category has a default infill approach detailed below.
Note that default transformations can be overwritten within an automunge(.) call by way
of passing custom transformdict family tree definitions which overwrite the family tree
of the default root categories listed above. For instance, if a user wishes to process
numerical columns with a default mean scaling ('mean') instead of z-score
normalization ('nmbr'), the user may copy the transform_dict entries from the code-base
for 'mean' root category and assign as a definition of the 'nmbr' root category, and then
pass that defined transformdict in the automunge call. (Note that we don't need to
overwrite the processdict for nmbr if we don't intend to overwrite its use as an entry
in other root category family trees. Also it is good practice to retain any downstream
entries such as in case the default for nmbr is used as an entry in some other root
category's family tree.) Here's a demonstration.
```
#create a transformdict that overwrites the root category definition of nmbr with mean:
#(assumes that we want to include NArw indicating presence of infill)
transformdict = {'nmbr' : {'parents' : [],
'siblings': [],
'auntsuncles' : ['mean'],
'cousins' : ['NArw'],
'children' : [],
'niecesnephews' : [],
'coworkers' : [],
'friends' : []}}
#And then we can simply pass this transformdict to an automunge(.) call.
train, train_ID, labels, \
val, val_ID, val_labels, \
test, test_ID, test_labels, \
postprocess_dict = \
am.automunge(df_train,
transformdict = transformdict)
```
Note if any of default transformation automation categories (nmbr/1010/ord3/text/bnry/dat6/null)
are overwritten in this fashion, a user can still assign original default categories to distinct
columns in assigncat by using corresponding alternates of (nmbd/101d/ordd/texd/bnrd/datd/nuld).
...
## Library of Transformations
### Library of Transformations Subheadings:
* [Intro](https://github.com/Automunge/AutoMunge/blob/master/README.md#intro)
* [Label Set Encodings](https://github.com/Automunge/AutoMunge/blob/master/README.md#label-set-encodings)
* [Numeric Set Normalizations](https://github.com/Automunge/AutoMunge/blob/master/README.md#numeric-set-normalizations)
* [Numeric Set Transformations](https://github.com/Automunge/AutoMunge/blob/master/README.md#numeric-set-transformations)
* [Numeric Set Bins and Grainings](https://github.com/Automunge/AutoMunge/blob/master/README.md#numeric-set-bins-and-grainings)
* [Sequential Numerical Set Transformations](https://github.com/Automunge/AutoMunge/blob/master/README.md#sequential-numerical-set-transformations)
* [Categorical Set Encodings](https://github.com/Automunge/AutoMunge/blob/master/README.md#categorical-set-encodings)
* [Date-Time Data Normalizations](https://github.com/Automunge/AutoMunge/blob/master/README.md#date-time-data-normalizations)
* [Date-Time Data Bins](https://github.com/Automunge/AutoMunge/blob/master/README.md#date-time-data-bins)
* [Differential Privacy Noise Injections](https://github.com/Automunge/AutoMunge/blob/master/README.md#differential-privacy-noise-injections)
* [Misc. Functions](https://github.com/Automunge/AutoMunge/blob/master/README.md#misc-functions)
* [Parsed Categoric Encodings](https://github.com/Automunge/AutoMunge/blob/master/README.md#Parsed-Categoric-Encodings)
* [More Efficient Parsed Categoric Encodings](https://github.com/Automunge/AutoMunge/blob/master/README.md#more-efficient-Parsed-Categoric-Encodings)
* [Multi-tier Parsed-Categoric-Encodings](https://github.com/Automunge/AutoMunge/blob/master/README.md#multi-tier-Parsed-Categoric-Encodings)
* [List of Root Categories](https://github.com/Automunge/AutoMunge/blob/master/README.md#list-of-root-categories)
* [List of Suffix Appenders](https://github.com/Automunge/AutoMunge/blob/master/README.md#list-of-suffix-appenders)
* [Other Reserved Strings](https://github.com/Automunge/AutoMunge/blob/master/README.md#other-reserved-strings)
* [Root Category Family Tree Definitions](https://github.com/Automunge/AutoMunge/blob/master/README.md#root-category-family-tree-definitions)
___
### Intro
Automunge has a built in library of transformations that can be passed for
specific columns with assigncat. (A column if left unassigned will defer to
the automated default methods to evaluate properties of the data to infer
appropriate methods of numerical encoding.) For example, a user can pass a
min-max scaling method to a list of specific columns with headers 'column1',
'column2' with:
```
assigncat = {'mnmx':['column1', 'column2']}
```
When a user assigns a column to a specific category, that category is treated
as the root category for the tree of transformations. Each key has an
associated transformation function (where the root category transformation function
is only applied if the root key is also found in the tree of family primitives).
The tree of family primitives, as introduced earlier, applies first the keys found
in upstream primitives i.e. parents/siblings/auntsuncles/cousins. If a transform
is applied for a primitive that includes downstream offspring, such as parents/
siblings, then the family tree for that key with offspring is inspected to determine
downstream offspring categories, for example if we have a parents key of 'mnmx',
then any children/niecesnephews/coworkers/friends in the 'mnmx' family tree will
be applied as parents/siblings/auntsuncles/cousins, respectively. Note that the
designation for supplements/replaces refers purely to the question of whether the
column to which the transform is being applied is kept in place or removed.
Now we'll start here by listing again the family tree primitives for those root
categories built into the automunge library. After that we'll give a quick
narrative for each of the associated transformation functions. First here again
are the family tree primitives.
```
'parents' :
upstream / first generation / replaces column / with offspring
'siblings':
upstream / first generation / supplements column / with offspring
'auntsuncles' :
upstream / first generation / replaces column / no offspring
'cousins' :
upstream / first generation / supplements column / no offspring
'children' :
downstream parents / offspring generations / replaces column / with offspring
'niecesnephews' :
downstream siblings / offspring generations / supplements column / with offspring
'coworkers' :
downstream auntsuncles / offspring generations / replaces column / no offspring
'friends' :
downstream cousins / offspring generations / supplements column / no offspring
```
Here is a quick description of the transformation functions associated
with each key which can either be assigned to a family tree primitive (or used
as a root key). We're continuing to build out this library of transformations.
In some cases different transformation categories may be associated with the
same set of transformation functions, but may be distinguished by different
family tree aggregations of transformation category sets.
Note the design philosophy is that any transform can be applied to any type
of data and if the data is not suited (such as applying a numeric transform
to a categorical set) the transform will just return all zeros. Note the
default infill refers to the infill applied under 'standardinfill'. Note the
default NArowtype refers to the categories of data that won't be subject to
infill.
### Label Set Encodings
Label set encodings are unique in that they don't include an aggregated NArw missing data markers
based on NArw_marker parameter. Missing data in label sets are subject to row deletions. Note that inversion of
label set encodings is support by the postmunge(.) inversion parameter.
* lbnm: for numeric label sets, entries are given a pass-through transform via 'exc2' (the numeric default under automation)
* lbnb: for numeric label sets, entries are given a z-score normalization via 'nmbr'
* lbor: for categoric label sets, entries are given an ordinal encoding via 'ordl' (the categoric default under automation)
* lb10: for categoric label sets, entries are given a binary encoding via '1010'
* lbos: for categoric label sets, entries are given an ordinal encoding via 'ordl' followed by a conversion to
string by 'strg' (some ML libraries prefer string encoded labels to recognize the classification application)
* lbte: for categoric label sets, entries are given a one-hot encoding (this has some interpretability benefits over ordinal)
* lbbn: for categoric label sets with 2 unique values, entries are given a binarization via 'bnry'
* lbsm: for categoric encoding with smoothed labels (i.e. "label smoothing"), further described in smth transform below (accepts activation parameter for activation threshold)
* lbfs: for categoric encoding with fitted smoothed labels (i.e. fitted label smoothing), further described in fsmh transform below (accepts activation parameter for activation threshold)
* lbda: for date-time label sets, entries are encoded comparable to 'dat6' described further below
### Numeric Set Normalizations
Please note that a survey of numeric transforms was provided in the paper [Numeric Encoding Options with Automunge](https://medium.com/automunge/a-numbers-game-b68ac261c40d).
* nmbr/nbr2/nbr3/nmdx/nmd2/nmd3: z-score normalization<br/>
(x - mean) / (standard deviation)
- useful for: normalizing numeric sets of unknown distribution
- default infill: negzeroinfill
- default NArowtype: numeric
- suffix appender: '\_nmbr' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'cap' and 'floor', default to False for no floor or cap,
True means floor/cap based on training set min/max, otherwise passed values serve as floor/cap to scaling,
noting that if cap<max then max reset to cap and if floor>min then min reset to floor
cap and floor based on pre-transform values
- 'stdev_cap', defaults to False, when cap and floor aren't specified, can pass an integer or float
to serve a cap/floor based on this number of standard deviations from the mean
- 'multiplier' and 'offset' to apply multiplier and offset to post-transform values, default to 1,0,
note that multiplier is applied prior to offset
- 'abs_zero', defaults to True, deactivate to turn off conversion of negative zeros to positive zeros applied prior to infill (this is included to supplement negzeroinfill)
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: mean / std / max / min / median / MAD
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* nbr4: z-score normalization similar to nmbr but with defaultinfill of zeroinfill instead of negzeroinfill and with abs_zero parameter deactivated<br/>
* mean/mea2/mea3: mean normalization (like z-score in the numerator and min-max in the denominator)<br/>
(x - mean) / (max - min)
My intuition says z-score has some benefits but really up to the user which they prefer.
- useful for: similar to z-score except data remains in fixed range
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_mean' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'cap' and 'floor', default to False for no floor or cap,
True means floor/cap based on training set min/max, otherwise passed values serve as floor/cap to scaling,
noting that if cap<max then max reset to cap and if floor>min then min reset to floor
cap and floor based on pre-transform values
- 'stdev_cap', defaults to False, when cap and floor aren't specified, can pass an integer or float
to serve a cap/floor based on this number of standard deviations from the mean
- 'multiplier' and 'offset' to apply multiplier and offset to post-transform values, default to 1,0,
note that multiplier is applied prior to offset
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: minimum / maximum / mean / std / median / MAD
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* mnmx/mnm2/mnm5/mmdx/mmd2/mmd3: vanilla min-max scaling<br/>
(x - min) / (max - min)
- useful for: normalizing numeric sets where all non-negative output is preferred
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_mnmx' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'cap' and 'floor', default to False for no floor or cap,
True means floor/cap based on training set min/max, otherwise passed values serve as floor/cap to scaling,
noting that if cap<max then max reset to cap and if floor>min then min reset to floor
cap and floor based on pre-transform values
- 'stdev_cap', defaults to False, when cap and floor aren't specified, can pass an integer or float
to serve a cap/floor based on this number of standard deviations from the mean
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: minimum / maximum / maxminusmin / mean / std / cap / floor / median / MAD
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* mnm3/mnm4: min-max scaling with outliers capped at 0.01 and 0.99 quantiles
- useful for: normalizing numeric sets where all non-negative output is preferred, and outliers capped
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_mnm3' in base configuration or based on the family tree category
- assignparam parameters accepted:
- qmax or qmin to change the quantiles from 0.99/0.01
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: quantilemin / quantilemax / mean / std / median / MAD
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
* mnm6: min-max scaling with test floor set capped at min of train set (ensures
test set returned values >= 0, such as might be useful for kernel PCA for instance)
- useful for: normalizing numeric sets where all non-negative output is preferred, guarantees nonnegative in postmunge
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_mnm6' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: minimum / maximum / mean / std / median / MAD
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
* retn: related to min/max scaling but retains +/- of values, based on conditions
if max>=0 and min<=0, x=x/(max-min), elif max>=0 and min>=0 x=(x-min)/(max-min),
elif max<=0 and min<=0 x=(x-max)/(max-min)
- useful for: normalization with sign retention for interpretability
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_retn' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'cap' and 'floor', default to False for no floor or cap,
True means floor/cap based on training set min/max, otherwise passed values serve as floor/cap to scaling,
noting that if cap<max then max reset to cap and if floor>min then min reset to floor
cap and floor based on pre-transform values
- 'stdev_cap', defaults to False, when cap and floor aren't specified, can pass an integer or float
to serve a cap/floor based on this number of standard deviations from the mean
- 'multiplier' and 'offset' to apply multiplier and offset to post-transform values, default to 1,0,
note that multiplier is applied prior to offset
- 'divisor' to select between default of 'minmax' or 'mad, 'std', where minmax means scaling by divisor of max-min
std based on scaling by divisor of standard deviation and mad by median absolute deviation
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: minimum / maximum / mean / std / median / MAD
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* rtbn: retain normalization supplemented by ordinal encoded standard deviation bins
* rtb2: retain normalization supplemented by one-hot encoded standard deviation bins
* MADn/MAD2: mean absolute deviation normalization, subtract set mean <br/>
(x - mean) / (mean absolute deviation)
- useful for: normalizing sets with fat-tailed distribution
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_MADn' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: mean / MAD / maximum / minimum / median
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* MAD3: mean absolute deviation normalization, subtract set maximum<br/>
(x - maximum) / (mean absolute deviation)
- useful for: normalizing sets with fat-tailed distribution
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_MAD3' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: mean / MAD / datamax / maximum / minimum / median
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* mxab: max absolute scaling normalization (just including this one for completeness, retn is a much better option to ensure consistent scaling between sets)<br/>
(x) / max absolute
- useful for: normalizing sets by dividing by max, commonly used in some circles
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_mxab' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: minimum / maximum / maxabs / mean / std
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* lgnm: normalization intended for lognormal distributed numerical sets,
achieved by performing a logn transform upstream of a nmbr normalization.
- useful for: normalizing sets within proximity of lognormal distribution
- default infill: mean
- default NArowtype: positivenumeric
- suffix appender: '_lgnm_nmbr'
- assignparam parameters accepted: can pass params to nmbr consistent with nmbr documentation above
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: consistent with both logn and nmbr
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
### Numeric Set Transformations
* bxcx/bxc2/bxc3/bxc4/bxc5: performs Box-Cox power law transformation. Applies infill to
values <= 0. Note we currently have a test for overflow in returned results and if found
set to 0. Please note that this method makes use of scipy.stats.boxcox. Please refer to
family trees below for full set of transformation categories associated with these roots.
- useful for: translates power law distributions to closer approximate gaussian
- default infill: mean (i.e. mean of values > 0)
- default NArowtype: positivenumeric
- suffix appender: '_bxcx' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: trnsfrm_mean / bxcx_lmbda / bxcxerrorcorrect / mean
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: no
* qttf/qtt2: performs quantile transformation to transform distribution properties of feature set.
Please note this method makes use of sklearn.preprocessing.QuantileTransformer from Scikit-Learn.
qttf converts to a normal output distribution, qtt2 converts to a uniform output distribution. When received data is all non-numeric returns as 0.
- useful for: translates distributions to closer approximate gaussian (may be applied as alternative to bxcx)
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_qttf' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'output_distribution': defualts to 'normal' for qttf, or 'uniform' for qtt2
- 'random_state': based on automunge(.) randomseed
- other parameters and their type requirements consistent with scikit documentation (n_quantiles, ignore_implicit_zeros, subsample)
- note that copy parameter not supported, fit parameters not supported
- driftreport postmunge metrics: input_max / input_min / input_stdev / input_mean
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
* log0/log1: performs logarithmic transform (base 10). Applies infill to values <= 0.
- useful for: sets with mixed range of large and small values
- default infill: meanlog
- default NArowtype: positivenumeric
- suffix appender: '_log0' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: meanlog
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* logn: performs natural logarithmic transform (base e). Applies infill to values <= 0.
- useful for: sets with mixed range of large and small values
- default infill: meanlog
- default NArowtype: positivenumeric
- suffix appender: '_logn' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: meanlog
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* sqrt: performs square root transform. Applies infill to values < 0.
- useful for: common mathematic transform
- default infill: mean
- default NArowtype: nonnegativenumeric
- suffix appender: '_sqrt' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: meansqrt
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* addd: performs addition of an integer or float to a set
- useful for: common mathematic transform
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_addd' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'add' for value added (default to 1)
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: mean, add
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* sbtr: performs subtraction of an integer or float to a set
- useful for: common mathematic transform
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_sbtr' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'subtract' for value subtracted (default to 1)
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: mean, subtract
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* mltp: performs multiplication of an integer or float to a set
- useful for: common mathematic transform
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_mltp' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'multiply' for value multiplied (default to 2)
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: mean, multiply
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* divd: performs division of an integer or float to a set
- useful for: common mathematic transform
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_divd' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'divide' for value subtracted (default to 2)
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: mean, divide
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* rais: performs raising to a power of an integer or float to a set
- useful for: common mathematic transform
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_rais' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'raiser' for value raised (default to 2)
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: mean, raiser
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* absl: performs absolute value transform to a set
- useful for: common mathematic transform
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_absl' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: mean
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with partial recovery
* trigometric functions sint/cost/tant/arsn/arcs/artn: performs trigometric transformations.
Transforms are built on top of numpy np.sin/np.cos/np.tan/np.arcsin/np.arccos/np.arctan respectively.
- useful for: common mathematic transform
- default infill: adjinfill
- default NArowtype: numeric
- suffix appender: based on the family tree category
- assignparam parameters accepted:
- 'operation': defaults to operation associated with the function, accepts {'sin', 'cos', 'tan', 'arsn', 'arcs', 'artn'}
- driftreport postmunge metrics: maximum, minimum
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with partial recovery
Q Notation family of transforms return a multicolumn binary encoded set with registers for sign, integers, and fractionals.
Transforms accept parameters integer_bits / fractional_bits / sign_bit for register sizes, care should be taken for
adequate registers to avoid overflow (overflow entries have values replaced with max or min capacity based on register sizes).
Default register sizes were selected to accommodate z-score normalized data with +/-6
standard deviations from mean and approximately 4 significant figures in decimals. For example, with default parameters an input column 'floats' will return columns: ['floats_qbt1_sign', 'floats_qbt1_2^2', 'floats_qbt1_2^1', 'floats_qbt1_2^0', 'floats_qbt1_2^-1', 'floats_qbt1_2^-2', 'floats_qbt1_2^-3', 'floats_qbt1_2^-4', 'floats_qbt1_2^-5', 'floats_qbt1_2^-6', 'floats_qbt1_2^-7', 'floats_qbt1_2^-8', 'floats_qbt1_2^-9', 'floats_qbt1_2^-10', 'floats_qbt1_2^-11', 'floats_qbt1_2^-12'].
Further details on the Q notation family of transforms provided in the essay [A New Kind of Data](https://medium.com/automunge/a-new-kind-of-data-1f1bcf90822d).
* qbt1: binary encoded signed floats with registers for sign, integers, and fractionals, default overflow at +/- 8.000
- useful for: feeding normalized floats to quantum circuits
- default infill: negative zero
- default NArowtype: numeric
- suffix appender: '_qbt1_2^#' where # integer associated with register and also '_qbt1_sign'
- assignparam parameters accepted:
- suffix: defaults to 'qbt1'
- sign_bit: boolean defaults to True to include sign register
- integer_bits: defaults to 3 for number of bits in register
- fractional_bits: defaults to 12 for number of bits in register
- angle_bits: boolean, defaults to False, when activated records activations as angles 0/pi instead of 0/1
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: maximum, minimum, mean, stdev
- returned datatype: int8
- inversion available: yes with full recovery
* qbt2: binary encoded signed integers with registers for sign and integers, default overflow at +/-32,767
- useful for: feeding floats to quantum circuits
- default infill: zero
- default NArowtype: negative zero
- suffix appender: '_qbt2_2^#' where # integer associated with register and also '_qbt2_sign'
- assignparam parameters accepted:
- suffix: defaults to 'qbt2'
- sign_bit: boolean defaults to True to include sign register
- integer_bits: defaults to 15 for number of bits in register
- fractional_bits: defaults to 0 for number of bits in register
- angle_bits: boolean, defaults to False, when activated records activations as angles 0/pi instead of 0/1
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: maximum, minimum, mean, stdev
- returned datatype: int8
- inversion available: yes with full recovery
* qbt3: binary encoded unsigned floats with registers for integers and fractionals, default overflow at 8.000 and <0
- useful for: feeding unsigned normalized floats to quantum circuits
- default infill: zero
- default NArowtype: numeric
- suffix appender: '_qbt3_2^#' where # integer associated with register
- assignparam parameters accepted:
- suffix: defaults to 'qbt3'
- sign_bit: boolean defaults to False, activate to include sign register
- integer_bits: defaults to 3 for number of bits in register
- fractional_bits: defaults to 13 for number of bits in register
- angle_bits: boolean, defaults to False, when activated records activations as angles 0/pi instead of 0/1
- driftreport postmunge metrics: maximum, minimum, mean, stdev
- returned datatype: int8
- inversion available: yes with full recovery
* qbt4: binary encoded unsigned integers with registers for integers, default overflow at 65,535 and <0
- useful for: feeding unsigned floats to quantum circuits
- default infill: zero
- default NArowtype: numeric
- suffix appender: '_qbt4_2^#' where # integer associated with register
- assignparam parameters accepted:
- suffix: defaults to 'qbt4'
- sign_bit: boolean defaults to False, activate to include sign register
- integer_bits: defaults to 16 for number of bits in register
- fractional_bits: defaults to 0 for number of bits in register
- angle_bits: boolean, defaults to False, when activated records activations as angles 0/pi instead of 0/1
- driftreport postmunge metrics: maximum, minimum, mean, stdev
- returned datatype: int8
- inversion available: yes with full recovery
Other Q Notation root categories:
- nmqb has upstream z score to qbt1 and z score not retained
- nmq2 has upstream z score to qbt1 and z score is retained
- mmqb has upstream min max to qbt3 and min max not retained
- mmq2 has upstream min max to qbt3 and min max is retained
- lgnr logarithmic number representation, registers 1 for sign, 1 for log sign, 4 log integer registers, 3 log fractional registers
### Numeric Set Bins and Grainings
* pwrs: bins groupings by powers of 10 (for values >0)
- useful for: feature engineering for linear models, also for oversampling bins with TrainFreqLevelizer parameter
- default infill: no activation (defaultinfill not supported)
- default NArowtype: positivenumeric
- suffix appender: '\_pwrs_10^#' where # is integer indicating target powers of 10 for column
- assignparam parameters accepted:
- 'negvalues', boolean defaults to False, True bins values <0
(recommend using pwr2 instead of this parameter since won't update NArowtype)
- 'suffix': to change suffix appender (leading underscore added internally)
- 'zeroset': boolean defaults to False, when True the number zero receives a distinct activation instead of grouping with missing data (recommend also updating NArowtype, such as to nonnegativenumeric)
- 'cap': defaults to False for no cap, can pass as integer or float and > values replaced with this figure
- 'floor': defaults to False for no floor, can pass as integer or float and < values replaced with this figure
- driftreport postmunge metrics: powerlabelsdict / meanlog / maxlog / activation_ratios
- returned datatype: int8
- inversion available: yes with partial recovery
* pwr2: bins groupings by powers of 10 (comparable to pwrs with negvalues parameter activated for values >0 & <0)
- useful for: feature engineering for linear models, also for oversampling bins with TrainFreqLevelizer parameter
- default infill: no activation (defaultinfill not supported)
- default NArowtype: nonzeronumeric
- suffix appender: '\_pwr2_10^#' or '\_pwr2_-10^#' where # is integer indicating target powers of 10 for column
- assignparam parameters accepted:
- 'negvalues', boolean defaults to True, True bins values <0
(recommend using pwrs instead of this parameter since won't update NArowtype)
- 'zeroset': boolean defaults to False, when True the number zero receives a distinct activation instead of grouping with missing data (recommend also updating NArowtype, such as to numeric)
- 'suffix': to change suffix appender (leading underscore added internally)
- 'cap': defaults to False for no cap, can pass as integer or float and > values replaced with this figure
- 'floor': defaults to False for no floor, can pass as integer or float and < values replaced with this figure
- driftreport postmunge metrics: powerlabelsdict / labels_train / missing_cols / activation_ratios
- returned datatype: int8
- inversion available: yes with partial recovery
* pwor: for numerical sets, outputs an ordinal encoding indicating where a
value fell with respect to powers of 10
- useful for: ordinal version of pwrs
- default infill: zero (defaultinfill not supported)
- default NArowtype: positivenumeric
- suffix appender: '_pwor' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'negvalues', boolean defaults to False, True bins values <0 (recommend using por2 instead of this parameter since won't update NArowtype)
- 'zeroset': boolean defaults to False, when True the number zero receives a distinct activation instead of grouping with missing data (recommend also updating NArowtype, such as to nonnegativenumeric)
- 'suffix': to change suffix appender (leading underscore added internally)
- 'cap': defaults to False for no cap, can pass as integer or float and > values replaced with this figure
- 'floor': defaults to False for no floor, can pass as integer or float and < values replaced with this figure
- driftreport postmunge metrics: meanlog / maxlog / ordl_activations_dict
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with partial recovery
* por2: for numerical sets, outputs an ordinal encoding indicating where a
value fell with respect to powers of 10 (comparable to pwor with negvalues parameter activated)
- useful for: ordinal version of pwr2
- default infill: zero (a distinct encoding) (defaultinfill not supported)
- default NArowtype: nonzeronumeric
- suffix appender: '_por2' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'negvalues', boolean defaults to True, True bins values <0 (recommend using pwor instead of this parameter since won't update NArowtype)
- 'zeroset': boolean defaults to False, when True the number zero receives a distinct activation instead of grouping with missing data (recommend also updating NArowtype, such as to numeric)
- 'suffix': to change suffix appender (leading underscore added internally)
- 'cap': defaults to False for no cap, can pass as integer or float and > values replaced with this figure
- 'floor': defaults to False for no floor, can pass as integer or float and < values replaced with this figure
- driftreport postmunge metrics: train_replace_dict / test_replace_dict / ordl_activations_dict
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with partial recovery
* pwbn: comparable to pwor but followed by a binary encoding, such as may be useful for data with
high variability
- useful for: ordinal version of pwrs
- default infill: zero (a distinct encoding)
- default NArowtype: nonzeronumeric
- suffix appender: '_pwbn_1010_#' (where # is integer for binary encoding activation number)
- assignparam parameters accepted:
- accepts parameters comparable to pwor
- driftreport postmunge metrics: train_replace_dict / test_replace_dict / ordl_activations_dict
- returned datatype: int8
- inversion available: yes with partial recovery
* por3: comparable to por2 but followed by a binary encoding, such as may be useful for data with
high variability
- useful for: ordinal version of pwr2
- default infill: zero (a distinct encoding)
- default NArowtype: nonzeronumeric
- suffix appender: '_por3_1010_#' (where # is integer for binary encoding activation number)
- assignparam parameters accepted:
- accepts parameters comparable to pwor
- driftreport postmunge metrics: train_replace_dict / test_replace_dict / ordl_activations_dict
- returned datatype: int8
- inversion available: yes with partial recovery
* bins: for numerical sets, outputs a set of columns (defaults to 6) indicating where a
value fell with respect to number of standard deviations from the mean of the
set (i.e. integer suffix represent # from mean as <-2:0, -2-1:1, -10:2, 01:3, 12:4, >2:5)
Note this can be activated to supplement numeric sets with binstransform automunge parameter.
- useful for: feature engineering for linear models, also for oversampling bins with TrainFreqLevelizer parameter
- default infill: mean
- default NArowtype: numeric
- suffix appender: '\_bins\_#' where # is integer identifier of bin
- assignparam parameters accepted:
- bincount integer for number of bins, defaults to 6
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: binsmean / binsstd / activation_ratios
- returned datatype: int8
- inversion available: yes with partial recovery
* bsor: for numerical sets, outputs an ordinal encoding indicating where a
value fell with respect to number of standard deviations from the mean of the
set (i.e. integer encoding represent # from mean as <-2:0, -2-1:1, -10:2, 01:3, 12:4, >2:5)
- useful for: ordinal version of bins
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_bsor' in base configuration or based on the family tree category
- assignparam parameters accepted:
- bincount as integer for # of bins (defaults to 6)
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: ordinal_dict / ordl_activations_dict / binsmean / binsstd
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with partial recovery
* bnwd/bnwK/bnwM: for numerical set graining to fixed width bins for one-hot encoded bins
(columns without activations in train set excluded in train and test data).
bins default to width of 1/1000/1000000 e.g. for bnwd/bnwK/bnwM
- useful for: bins for sets with known recurring demarcations
- default infill: mean
- default NArowtype: numeric
- suffix appender: '\_bnwd\_#1\_#2' where #1 is the width and #2 is the bin identifier (# from min)
and 'bnwd' as bnwK or bnwM based on variant
- assignparam parameters accepted:
- 'width' to set bin width
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: binsmean / bn_min / bn_max / bn_delta / bn_count / bins_id /
bins_cuts / bn_width_bnwd (or bnwK/bnwM) / textcolumns / activation_ratios
- returned datatype: int8
- inversion available: yes with partial recovery
* bnwo/bnKo/bnMo: for numerical set graining to fixed width bins for ordinal encoded bins
(integers without train set activations still included in test set).
bins default to width of 1/1000/1000000 e.g. for bnwd/bnwK/bnwM
- useful for: ordinal version of preceding
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_bnwo' (or '_bnKo', '_bnMo')
- assignparam parameters accepted:
- 'width' to set bin width
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: binsmean / bn_min / bn_max / bn_delta / bn_count / bins_id /
bins_cuts / bn_width / ordl_activations_dict
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with partial recovery
* bnep/bne7/bne9: for numerical set graining to equal population bins for one-hot encoded bins.
bin count defaults to 5/7/9 e.g. for bnep/bne7/bne9
- useful for: bins for sets with unknown demarcations
- default infill: no activation (defaultinfill not supported)
- default NArowtype: numeric
- suffix appender: '\_bnep\_#1' where #1 is the bin identifier (# from min) (or bne7/bne9 instead of bnep)
- assignparam parameters accepted:
- 'bincount' to set number of bins
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: binsmean / bn_min / bn_max / bn_delta / bn_count / bins_id /
bins_cuts / bincount_bnep (or bne7/bne9) / textcolumns /
activation_ratios
- returned datatype: int8
- inversion available: yes with partial recovery
* bneo/bn7o/bn9o: for numerical set graining to equal population bins for ordinal encoded bins.
bin count defaults to 5/7/9 e.g. for bneo/bn7o/bn9o
- useful for: ordinal version of preceding
- default infill: adjacent cell
- default NArowtype: numeric
- suffix appender: '\_bneo' (or bn7o/bn9o)
- assignparam parameters accepted:
- 'bincount' to set number of bins
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: binsmean / bn_min / bn_max / bn_delta / bn_count / bins_id /
bins_cuts / bincount / ordl_activations_dict
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with partial recovery
* bkt1: for numerical set graining to user specified encoded bins. First and last bins unconstrained.
- useful for: bins for sets with known irregular demarcations
- default infill: no activation (defaultinfill not supported)
- default NArowtype: numeric
- suffix appender: '\_bkt1\_#1' where #1 is the bin identifier (# from min)
- assignparam parameters accepted:
- 'buckets', a list of numbers, to set bucket boundaries (leave out +/-'inf')
defaults to [0,1,2] (arbitrary plug values), can also pass buckets values as percent of range by framing as a set instead of list e.g. {0,0.25,0.50,1}
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: binsmean / buckets_bkt1 / bins_cuts / bins_id / textcolumns /
activation_ratios
- returned datatype: int8
- inversion available: yes with partial recovery
* bkt2: for numerical set graining to user specified encoded bins. First and last bins bounded.
- useful for: bins for sets with known irregular demarcations, similar to preceding but first and last bins bounded
- default infill: no activation (defaultinfill not supported)
- default NArowtype: numeric
- suffix appender: '\_bkt2\_#1' where #1 is the bin identifier (# from min)
- assignparam parameters accepted:
- 'buckets', a list of numbers, to set bucket boundaries
defaults to [0,1,2] (arbitrary plug values), can also pass buckets values as percent of range by framing as a set instead of list e.g. {0,0.25,0.50,1}
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: binsmean / buckets_bkt2 / bins_cuts / bins_id / textcolumns /
activation_ratios
- returned datatype: int8
- inversion available: yes with partial recovery
* bkt3: for numerical set graining to user specified ordinal encoded bins. First and last bins unconstrained.
- useful for: ordinal version of bkt1
- default infill: unique activation
- default NArowtype: numeric
- suffix appender: '_bkt3' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'buckets', a list of numbers, to set bucket boundaries (leave out +/-'inf')
defaults to [0,1,2] (arbitrary plug values), can also pass buckets values as percent of range by framing as a set instead of list e.g. {0,0.25,0.50,1}
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: binsmean / buckets / bins_cuts / bins_id / ordl_activations_dict
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with partial recovery
* bkt4: for numerical set graining to user specified ordinal encoded bins. First and last bins bounded.
- useful for: ordinal version of bkt2
- default infill: unique activation
- default NArowtype: numeric
- suffix appender: '_bkt4' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'buckets', a list of numbers, to set bucket boundaries
defaults to [0,1,2] (arbitrary plug values), can also pass buckets values as percent of range by framing as a set instead of list e.g. {0,0.25,0.50,1}
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: binsmean / buckets / bins_cuts / bins_id / ordl_activations_dict
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with partial recovery
* note that bins each have variants for one-hot vs ordinal vs binary encodings
one-hot : bkt1, bkt2, bins, bnwd, bnwK, bnwM, bnep, bne7, bne9, pwrs, pwr2
ordinal : bkt3, bkt4, bsor, bnwo, bnKo, bnMo, bneo, bn7o, bn9o, pwor, por2
binary : bkb3, bkb4, bsbn, bnwb, bnKb, bnMb, bneb, bn7b, bn9b, pwbn, por3
* tlbn: returns equal population bins in separate columns with activations replaced by min-max scaled
values within that segment's range (between 0-1) and other values subject to an infill of -1
(intended for use to evaluate feature importance of different segments of a numerical set's distribution
with metric2 results from a feature importance evaluation). Further detail on the tlbn transform provided
in the essay [Automunge Influence](https://medium.com/automunge/automunge-influence-382d44786e43).
- useful for: evaluating relative feature importance between different segments of a numeric set distribution
- default infill: no activation (this is the recommended infill for this transform)
- default NArowtype: numeric
- suffix appender: '\_tlbn\_#' where # is the bin identifier, and max# is right tail / min# is left tail
- assignparam parameters accepted:
- 'bincount' to set number of bins (defaults to 9)
- 'buckets', defaults to False, can pass as a list of bucket boundaries for custom distribution segments
which will take precedence over bincount (leave out -/+inf which will be added for first and last bins internally)
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: binsmean / bn_min / bn_max / bn_delta / bn_count / bins_id /
bins_cuts / bincount_tlbn / textcolumns / activation_ratios
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
### Sequential Numerical Set Transformations
Please note that sequential transforms assume the forward progression of time towards direction of bottom of dataframe.
Please note that only stdrdinfill (adjinfill) are supported for shft transforms.
* dxdt/d2dt/d3dt/d4dt/d5dt/d6dt: rate of change (row value minus value in preceding row), high orders
return lower orders (e.g. d2dt returns original set, dxdt, and d2dt), all returned sets include 'retn'
normalization which scales data with min/max while retaining +/- sign
- useful for: time series data, also bounding sequential sets
- default infill: adjacent cells
- default NArowtype: numeric
- suffix appender: '_dxdt' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'periods' sets number of time steps offset to evaluate, defaults to 1
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: positiveratio / negativeratio / zeroratio / minimum / maximum / mean / std
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: no
* dxd2/d2d2/d3d2/d4d2/d5d2/d6d2: denoised rate of change (average of last two or more rows minus average
of preceding two or more rows), high orders return lower orders (e.g. d2d2 returns original set, dxd2,
and d2d2), all returned sets include 'retn' normalization
- useful for: time series data, also bounding sequential sets
- default infill: adjacent cells
- default NArowtype: numeric
- suffix appender: '_dxd2' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'periods' sets number of time steps offset to evaluate, defaults to 2
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: positiveratio / negativeratio / zeroratio / minimum / maximum / mean / std
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: no
* nmdx/nmd2/nmd3/nmd4/nmd5/nmd6: comparable to dxdt but includes upstream of sequential transforms a
nmrc numeric string parsing top extract numbers from string sets
* mmdx/mmd2/mmd3/mmd4/mmd5/mmd6: comparable to dxdt but uses z-score normalizations via 'nbr2' instead of 'retn'
* dddt/ddd2/ddd3/ddd4/ddd5/ddd6: comparable to dxdt but no normalizations applied
* dedt/ded2/ded3/ded4/ded5/ded6: comparable to dxd2 but no normalizations applied
- inversion available: no
* shft/shf2/shf3: shifted data forward by a period number of time steps defaulting to 1/2/3. Note that NArw aggregation
not supported for shift transforms, infill only available as adjacent cell
- useful for: time series data, carrying prior time steps forward
- default infill: adjacent cells (defaultinfill not supported)
- default NArowtype: numeric
- suffix appender: '_shft' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'periods' sets number of time steps offset to evaluate, defaults to 1/2/3
- 'suffix' sets the suffix appender of returned column
as may be useful to distinguish if applying this multiple times
- driftreport postmunge metrics: positiveratio / negativeratio / zeroratio / minimum / maximum / mean / std
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
### Categorical Set Encodings
* bnry: converts sets with two values to boolean identifiers. Defaults to assigning
1 to most common value and 0 to second most common, unless 1 or 0 is already included
in most common of the set then defaults to maintaining those designations. If applied
to set with >2 entries applies infill to those entries beyond two most common.
- useful for: binarizing sets with two unique values (differs from 1010 in that distinct encoding isn't registered for missing data to return single column)
- default infill: most common value
- default NArowtype: justNaN
- suffix appender: '_bnry' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'str_convert': boolean defaults as False for distinct encodings between numbers and string equivalents
e.g. 2 != '2', or when passed as True e.g. 2 == '2'. Also can be passed as 'conditional_on_bytes' which resets to True when bytes entries are present in train set otherwise resets to False.
- 'suffix': to change suffix appender (leading underscore added internally)
- 'invert': reverses the 0/1 convention (results in most common value having 0 activation which is default for lbbn label processing to resolve a remote edge case for labels)
- driftreport postmunge metrics: missing / 1 / 0 / extravalues / oneratio / zeroratio
- returned datatype: int8
- inversion available: yes with full recovery
* bnr2: (Same as bnry except for default infill.)
- useful for: similar to bnry preceding but with different default infill
- default infill: least common value
- default NArowtype: justNaN
- suffix appender: '_bnr2' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'str_convert': boolean defaults as False for distinct encodings between numbers and string equivalents
e.g. 2 != '2', or when passed as True e.g. 2 == '2'. Also can be passed as 'conditional_on_bytes' which resets to True when bytes entries are present in train set otherwise resets to False.
- 'suffix': to change suffix appender (leading underscore added internally)
- 'invert': reverses the 0/1 convention (results in most common value having 0 activation which is default for lbbn label processing to resolve a remote edge case for labels)
- driftreport postmunge metrics: missing / 1 / 0 / extravalues / oneratio / zeroratio
- returned datatype: int8
- inversion available: yes with full recovery
* text/txt2: converts categorical sets to one-hot encoded set of boolean identifiers
(consistently encodings numbers and numerical string equivalents due to column labeling convention, e.g. 12 == '12').
Note that text and onht are implemented with the same functions by updates to the suffix_convention parameter.
- useful for: one hot encoding, returns distinct column activation per unique entry
- default infill: no activation in row
- default NArowtype: justNaN
- suffix appender:
- '_text\_(entry)' where entry is the categoric entry target of column activations (one of the unique values found in received column)
- assignparam parameters accepted:
- 'suffix_convention', accepts one of {'text', 'onht'} for suffix convention, defaults to 'text'. Note that 'str_convert' and 'null_activation' parameters only accepted in 'onht' configuration.
- 'str_convert', applied as True in text suffix_convention for common encodings between numbers and string equivalents e.g. 2 == '2'. (text does not support other str_convert scenarios due to column header conventions)
- 'null_activation': applied as False in text suffix_convention for no activations for missing data
- 'all_activations': defaults to False, can pass as a list of all entries that will be targets for activations (which may have fewer or more entries than the set of unique values found in the train set, including entries not found in the train set)
- 'add_activations': defaults to False, user can pass as a list of entries that will be added as targets for activations (resulting in extra returned columns if those entries aren't present in the train set)
- 'less_activations': defaults to False, user can pass as a list of entries that won't be treated as targets for activation (these entries will instead receive no activation)
- 'consolidated_activations': defaults to False, user can pass a list of entries (or a list of lists of entries) that will have their activations consolidated to a single common activation
- 'ordered_overide': default to True, accepts boolean indicating if columns received as pandas ordered categoric will use that basis for order of the returned columns. Note this is deactivated when activation parameters are specified (all/add/less/consolidated).
- 'frequency_sort': boolean defaults to True, when activated the order of returned columns is sorted by frequency of entries as found in the train set, when deactivated sorting is alphabetic
* onht: converts categorical sets to one-hot encoded set of boolean identifiers
(like text but different convention for returned column headers and distinct encodings for numbers and numerical string equivalents). Note that text and onht are implemented with the same functions by updates to the suffix_convention parameter. To apply onht to a "messy" feature with multiple columns in input headers can apply assigncat set bracket specification to root category 'cns2'.
- useful for: similar to text transform preceding but with numbered column header convention
- default infill: no activation in row
- default NArowtype: justNaN
- suffix appender: '_onht\_#' where # integer corresponds to the target entry of a column
- assignparam parameters accepted:
- 'suffix_convention', accepts one of {'text', 'onht'} for suffix convention, defaults to 'text' (onht process_dict specification overwrites this to 'onht'). Note that 'str_convert' and 'null_activation' parameters only accepted in 'onht' configuration.
- 'str_convert', boolean defaults as True for common encodings between numbers and string equivalents
e.g. 2 != '2', when passed as True e.g. 2 == '2' (the False scenario does not support bytes type entries). Also can be passed as 'conditional_on_bytes' which resets to True when bytes entries are present in train set otherwise resets to False.
- 'null_activation': defaults to False, when True missing data is returned with distinct activation in final column in set. (Also accepts as 'Binary' which is for internal use.)
- 'all_activations': defaults to False, can pass as a list of all entries that will be targets for activations (which may have fewer or more entries than the set of unique values found in the train set, including entries not found in the train set)
- 'add_activations': defaults to False, user can pass as a list of entries that will be added as targets for activations (resulting in extra returned columns if those entries aren't present in the train set)
- 'less_activations': defaults to False, user can pass as a list of entries that won't be treated as targets for activation (these entries will instead receive no activation)
- 'consolidated_activations': defaults to False, user can pass a list of entries (or a list of lists of entries) that will have their activations consolidated to a single common activation
- 'ordered_overide': default to True, accepts boolean indicating if columns received as pandas ordered categoric will use that basis for order of the returned columns. Note this is deactivated when activation parameters are specified (all/add/less/consolidated).
- 'frequency_sort': boolean defaults to True, when activated the order of returned columns is sorted by frequency of entries as found in the train set, when deactivated sorting is alphabetic
- driftreport postmunge metrics: textlabelsdict_text / <column> + '_ratio' (column specific)
text_categorylist is key between columns and target entries
- returned datatype: int8
- inversion available: yes with full recovery
* ordl/ord2/ord5: converts categoric sets to ordinal integer encoded set, encodings sorted alphabetically
- useful for: categoric sets with high cardinality where one-hot or binarization may result in high dimensionality. Also default for categoric labels.
- default infill: naninfill, with returned distinct activation of integer 0
- default NArowtype: justNaN
- suffix appender: '_ordl' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'str_convert', boolean defaults as True for common encodings between numbers and string equivalents
e.g. 2 == '2'. Also can be passed as 'conditional_on_bytes' which resets to True when bytes entries are present in train set otherwise resets to False.
- 'null_activation': defaults to True for a distinct missing data encoding, when False missing data is grouped with another entry in the 0 integer encoding. (Also accepts as 'Binary' which is for internal use.)
- 'all_activations': defaults to False, can pass as a list of all entries that will be targets for activations (which may have fewer or more entries than the set of unique values found in the train set, including entries not found in the train set)
- 'add_activations': defaults to False, user can pass as a list of entries that will be added as targets for activations (resulting in extra returned columns if those entries aren't present in the train set)
- 'less_activations': defaults to False, user can pass as a list of entries that won't be treated as targets for activation (these entries will instead receive no activation)
- 'consolidated_activations': defaults to False, user can pass a list of entries (or a list of lists of entries) that will have their activations consolidated to a single common activation
- 'ordered_overide': default to True, accepts boolean indicating if columns received as pandas ordered categoric will use that basis for order of the returned columns. Note this is deactivated when activation parameters are specified (all/add/less/consolidated).
- 'frequency_sort': boolean defaults to True but set as False for ordl, when activated the order of integer activations is sorted by frequency of entries as found in the train set, when deactivated sorting is alphabetic. The 0 activation is reserved for missing data.
- driftreport postmunge metrics: ordinal_dict / ordinal_overlap_replace / ordinal_activations_dict
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with full recovery
* ord3: converts categoric sets to ordinal integer encoded set, sorted first by frequency of category
occurrence, second basis for common count entries is alphabetical. To apply ord3 to a "messy" feature with multiple columns in input headers can apply assigncat set bracket specification to root category 'cns3'.
- useful for: similar to ordl preceding but activations are sorted by entry frequency instead of alphabetical
- default infill: unique activation
- default NArowtype: justNaN
- suffix appender: '_ord3' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'ordered_overide', boolean defaults True, when True inspects for Pandas ordered categorical and
if found integer encoding order defers to that basis
- 'str_convert', boolean defaults as True for common encodings between numbers and string equivalents
e.g. 2 == '2' (the False scenario does not support bytes type entries). Also can be passed as 'conditional_on_bytes' which resets to True when bytes entries are present in train set otherwise resets to False.
- 'null_activation': defaults to True for a distinct missing data encoding, when False missing data is grouped with another entry in the 0 integer encoding. (Also accepts as 'Binary' which is for internal use.)
- 'all_activations': defaults to False, can pass as a list of all entries that will be targets for activations (which may have fewer or more entries than the set of unique values found in the train set, including entries not found in the train set)
- 'add_activations': defaults to False, user can pass as a list of entries that will be added as targets for activations (resulting in extra returned columns if those entries aren't present in the train set)
- 'less_activations': defaults to False, user can pass as a list of entries that won't be treated as targets for activation (these entries will instead receive no activation)
- 'consolidated_activations': defaults to False, user can pass a list of entries (or a list of lists of entries) that will have their activations consolidated to a single common activation
- 'ordered_overide': default to True, accepts boolean indicating if columns received as pandas ordered categoric will use that basis for order of the returned columns. Note this is deactivated when activation parameters are specified (all/add/less/consolidated).
- 'frequency_sort': boolean defaults to True, when activated the order of integer activations is sorted by frequency of entries as found in the train set, when deactivated sorting is alphabetic. The 0 activation is reserved for missing data.
- driftreport postmunge metrics: ordinal_dict / ordinal_overlap_replace / ordinal_activations_dict
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with full recovery
* ord4: derived by an ord3 transform followed by a mnmx transform. Useful as a scaled metric
(numeric in range 0-1) which ranks any redundant entries by frequency of occurrence.
* lbos: an ord3 encoding followed by downstream conversion to string dtype. This may be useful for
label sets passed to downstream libraries to ensure they treat labels as target for classification instead
of regression.
* 1010: converts categorical sets of >2 unique values to binary encoding (more memory
efficient than one-hot encoding). To apply 1010 to a "messy" feature with multiple columns in input headers can apply assigncat set bracket specification to root category 'cnsl'.
- useful for: our default categoric encoding for sets with number of entries below numbercategoryheustic (defaulting to 255)
- default infill: naninfill, with returned distinct activation set of all 0's
- default NArowtype: justNaN
- suffix appender: '\_1010\_#' where # is integer indicating order of 1010 columns
- assignparam parameters accepted:
- 'str_convert', boolean defaults as True for common encodings between numbers and string equivalents
e.g. 2 == '2'. Also can be passed as 'conditional_on_bytes' which resets to True when bytes entries are present in train set otherwise resets to False.
- 'null_activation': defaults to True for a distinct missing data encoding, when False missing data is grouped with another entry in the all 0 encoding. (Also accepts as 'Binary' which is for internal use.)
- 'all_activations': defaults to False, can pass as a list of all entries that will be targets for activations (which may have fewer or more entries than the set of unique values found in the train set, including entries not found in the train set), note NaN missing data representation will be added
- 'add_activations': defaults to False, user can pass as a list of entries that will be added as targets for activations (resulting in extra returned columns if those entries aren't present in the train set)
- 'less_activations': defaults to False, user can pass as a list of entries that won't be treated as targets for activation (these entries will instead receive no activation)
- 'consolidated_activations': defaults to False, user can pass a list of entries (or a list of lists of entries) that will have their activations consolidated to a single common activation. For consolidation with NaN missing data representation user should instead apply an assignnan conversion.
- 'max_zero': defaults to False, when activated the encodings are conducted to maximize 0 encoding representation for unique entries as sorted by frequency (e.g. most frequent entries have most zeros in their encoding.) This was implemented since 0 is the low energy state for quantum circuits. The root category '10mz' applies 1010 with this parameter defaulting to activated.
- driftreport postmunge metrics: _1010_binary_encoding_dict / _1010_overlap_replace /
_1010_binary_column_count / _1010_activations_dict
(for example if 1010 encoded to three columns based on number of categories <8,
it would return three columns with suffix appenders 1010_1, 1010_2, 1010_3)
- returned datatype: int8
- inversion available: yes with full recovery
* maxb / matx / ma10: categoric encodings that allow user to cap the number activations in the set.
maxb (ordinal), matx (one hot), and ma10 (binary).
- useful for: categoric sets where some outlier entries may not occur with enough frequency for training purposes
- default infill: plug value unique activation
- default NArowtype: justNaN
- suffix appender: '\_maxb' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'maxbincount': set a maximum number of activations (integer) default False
- 'minentrycount': set a minimum number of entries in train set to register an activation (integer) default False
- 'minentryratio': set a minimum ratio of entries in train set to register an activation (float between 0-1)
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: new_maxactivation / consolidation_count
- returned datatype: matx and ma10 as int8, maxb as conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with full recovery
* ucct: converts categorical sets to a normalized float of unique class count,
for example, a 10 row train set with two instances of 'circle' would replace 'circle' with 0.2
and comparable to test set independent of test set row count
- useful for: supplementing categoric sets with a proxy for activation frequency
- default infill: ratio of infill in train set
- default NArowtype: justNaN
- suffix appender: '_ucct' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: ordinal_dict / ordinal_overlap_replace / ordinal_activations_dict
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: no
* lngt/lngm/lnlg: returns string length of categoric entries (lngm followed by mnmx, lnlg by logn)
- useful for: supplementing categoric sets with a proxy for information content (based on string length)
- default infill: plug value of 3 (based on len(str(np.nan)) )
- default NArowtype: justNaN
- suffix appender: '_lngt' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: maximum, minimum, mean, std
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: no
* aggt: consolidate categoric entries based on user passed aggregate parameter
- useful for: performing upstream of categoric encoding when some entries are redundant
- default infill: none
- default NArowtype: justNaN
- suffix appender: '_aggt' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'aggregate' as a list or as a list of lists of aggregation sets
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: aggregate
- returned datatype: str (other categoric encodings can be returned downstream to return numeric)
- inversion available: yes with partial recovery
* smth: applies a one-hot encoding followed by a label smoothing operation to reduce activation value and increase null value. The smoothing is applied to train data but not validation or test data. Smoothing can be applied to test data in postmunge(.) by activating the traindata parameter.
- useful for: label smoothing, speculate there may be benefit for categoric encodings with noisy entries of some error rate
- default infill: none
- default NArowtype: justNaN
- suffix appender: '_smt0\_(entry)\_smth\_#' where # is integer in base configuration or based on the family tree category
- assignparam parameters accepted:
- note that parameters for the upstream onehot encoding can be passed in assignparam to the smt0 category (consistent to text transform), and smoothing parameters can be passed to the smth category
- 'activation' defaults to 0.9, a float between 0.5-1 to designate activation value
- 'LSfit' defaults to False, when True applies fitted label smoothing (consistent with fsmh)
- 'testsmooth' defaults to False, when True applies smoothing to test data in both automunge and postmunge
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: comparable to onht
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* fsmh: comparable to smth but applies by default a fitted label smoothing, in which null values are fit to ratio of activations corresponding to current activation. The smoothing is applied to train data but not validation or test data. Smoothing can be applied to test data in postmunge(.) by activating the traindata parameter. (Note that parameters for the upstream onehot encoding can be passed in assignparam to the fsm0 category (consistent to text transform), and smoothing parameters can be passed to the fsmh category
* hash: applies "the hashing trick" to convert high cardinality categoric sets to set of columns with integer word encodings
e.g. for an entry "Three word quote" may return three columns with integers corresponding to each of three words
where integer is determined by hashing, and also based on passed parameter vocab_size.
Note that hash strips out special characters. Uhsh is available if upstream uppercase conversion desired. Note that there is a possibility
of encoding overlap between entries with this transform. Also note that hash is excluded from ML infill
vocab_size calculated based on number of unique words found in train set times a multiplier (defaulting to 2), where if that
is greater than cap then reverts to cap. The hashing transforms are intended as an alternative to other categoric
encodings which doesn't require a conversion dictionary assembly for consistent processing of subsequent data, as
may benefit sets with high cardinality (i.e. high number of unique entries). The tradeoff is that inversion
is not supported as there is possibility of redundant encodings for different unique entries. Further detail on hashing
provided in the essay [Hashed Categoric Encodings with Automunge](https://medium.com/automunge/hashed-categoric-encodings-with-automunge-92c0c4b7668c).
- useful for: categoric sets with very high cardinality, default for categoric sets with (nearly) all unique entries
- default infill: none
- default NArowtype: justNaN
- suffix appender: '\_hash\_#' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'heuristic_multiplier', float defaults to 2
- 'heuristic_cap', integer defaults to 1024
- 'vocab_size', integer defaults to False, when assigned overrides heuristic
- 'space', defaults to ' ', this is used to extract words by space separator
- 'excluded_characters', defaults to [',', '.', '?', '!', '(', ')'], these characters are stripped prior to encoding
- 'salt', arbitrary string, defaults to empty string '', appended to entries to perturb encoding basis for privacy
- 'hash_alg', defaults to 'hash' for use of native python hash function for speed, 'md5' uses hashlib md5 function instead
- 'max_column_count', defaults to False, can pass as integer to cap the number of returned columns, in which case when
words are extracted the final column's encodings will be based on all remaining word and space characters inclusive
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: col_count (number of columns), vocab_size
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: no
* hsh2: similar to hash but does not partition entries by space separator, so only returns one column. Note this version doesn't scrub special characters prior to encoding.
- useful for: categoric sets with very high cardinality, default for categoric sets with number of entries exceeding numbercategoryheuristic (defaulting to 255)
- default infill: none
- default NArowtype: justNaN
- suffix appender: '_hsh2' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'heuristic_multiplier', float defaults to 2
- 'heuristic_cap', integer defaults to 1024
- 'vocab_size', integer defaults to False, when assigned overrides heuristic
- 'excluded_characters', a list of strings, defaults to [] (an empty set), these characters are stripped prior to encoding
- 'salt', arbitrary string, defaults to empty string '', appended to entries to perturb encoding basis for privacy
- 'hash_alg', defaults to 'hash' for use of native python hash function for speed, 'md5' uses hashlib md5 function instead
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: col_count (number of columns), vocab_size
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: no
* hs10: similar to hsh2 but returns activations in a set of columns with binary encodings, similar to 1010
- useful for: binary version of hsh2
- default infill: none
- default NArowtype: justNaN
- suffix appender: '\_hs10\_#' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'heuristic_multiplier', float defaults to 2
- 'heuristic_cap', integer defaults to 1024
- 'vocab_size', integer defaults to False, when assigned overrides heuristic
- 'excluded_characters', a list of strings, defaults to [] (an empty set), these characters are stripped prior to encoding
- 'salt', arbitrary string, defaults to empty string '', appended to entries to perturb encoding basis for privacy
- 'hash_alg', defaults to 'hash' for use of native python hash function for speed, 'md5' uses hashlib md5 function instead
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: col_count (number of columns), vocab_size
- returned datatype: int8
- inversion available: no
* UPCS: convert string entries to all uppercase characters
- useful for: performing upstream of categoric encodings when case configuration is irrelevant
- default infill: none
- default NArowtype: justNaN
- suffix appender: '_UPCS' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'activate', boolean defaults to True, False makes this a passthrough without conversion
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: activate
- returned datatype: str (other categoric encodings can be returned downstream to return numeric)
- inversion available: yes with partial recovery
* new processing functions Unht / Utxt / Utx2 / Utx3 / Uord / Uor2 / Uor3 / Uor6 / U101 / Ucct / Uhsh / Uhs2 / Uh10
- comparable to functions onht / text / txt2 / txt3 / ordl / ord2 / ord3 / ors6 / 1010 / ucct / hash / hsh2 / hs10
- but upstream conversion of all strings to uppercase characters prior to encoding
- (e.g. 'USA' and 'usa' would be consistently encoded)
- default infill: in uppercase conversion NaN's are assigned distinct encoding 'NAN'
- and may be assigned other infill methods in assigninfill
- default NArowtype: 'justNaN'
- suffix appender: '_UPCS' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: comparable to functions text / txt2 / txt3 / ordl / ord2 / ord3 / ors6 / 1010 / ucct
- returned datatype: comparable to functions onht / text / txt2 / txt3 / ordl / ord2 / ord3 / ors6 / 1010 / ucct / hash / hsh2 / hs10
- inversion available: yes
* ntgr/ntg2/ntg3: sets of transformations intended for application to integer sets of unknown interpretation
(such as may be continuous variables, discrete relational variables, or categoric). The ntgr family encodes
in multiple forms appropriate for each of these different types, such as to allow the ML training to identify
which is most useful. Reference the family trees below for composition details (can do a control-F search for ntgr etc).
- useful for: encoding integer sets of unknown interpretation
- default NArowtype: 'integer'
- ntgr set includes: ord4, retn, 1010, ordl
- ntg2 set includes: ord4, retn, 1010, ordl, pwr2
- ntg3 set includes: ord4, retn, ordl, por2
### Date-Time Data Normalizations
Date time processing transforms are implementations of two master functions: time and tmcs, which accept
various parameters associated with suffix, time scale, and sin/cos periodicity, etc. They segment time stamps by
time scale returned in separate columns. If a particular time scale is not present in training data it is omitted.
* date/dat2: for datetime formatted data, segregates data by time scale to multiple
columns (year/month/day/hour/minute/second) and then performs z-score normalization
- useful for: datetime entries of mixed time scales where periodicity is not relevant
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: includes appenders for (_year, _mnth, _days, _hour, _mint, _scnd)
- assignparam parameters accepted:
- timezone: defaults to False as passthrough, otherwise can pass time zone abbreviation
(useful to consolidate different time zones such as for bus hr bins)
for list of pandas accepted abbreviations see pytz.all_timezones
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: meanyear / stdyear / meanmonth / stdmonth / meanday / stdday /
meanhour / stdhour / meanmint / stdmint / meanscnd / stdscnd
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: pending
* year/mnth/days/hour/mint/scnd: segregated by time scale and z-score normalization
- useful for: datetime entries of single time scale where periodicity is not relevant
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: includes appenders for (_year, _mnth, _days, _hour, _mint, _scnd)
- driftreport postmunge metrics: timemean / timemax / timemin / timestd
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: pending
* mnsn/mncs/dysn/dycs/hrsn/hrcs/misn/mics/scsn/sccs: segregated by time scale and
dual columns with sin and cos transformations for time scale period (e.g. 12 months, 24 hrs, 7 days, etc)
- useful for: datetime entries of single time scale where periodicity is relevant
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: includes appenders for (mnsn/mncs/dysn/dycs/hrsn/hrcs/misn/mics/scsn/sccs)
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: timemean / timemax / timemin / timestd
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: pending
* mdsn/mdcs: similar sin/cos treatment, but for combined month/day, note that periodicity is based on
number of days in specific months, including account for leap year, with 12 month periodicity
- useful for: datetime entries of single time scale combining months and days where periodicity is relevant
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: includes appenders for (mdsn/mdcs)
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: timemean / timemax / timemin / timestd
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: pending
* dhms/dhmc: similar sin/cos treatment, but for combined day/hour/min, with 7 day periodicity
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: includes appenders for (dhms/dhmc)
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: timemean / timemax / timemin / timestd
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: pending
* hmss/hmsc: similar sin/cos treatment, but for combined hour/minute/second, with 24 hour periodicity
- useful for: datetime entries of single time scale combining time scales where periodicity is relevant
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: includes appenders for (hmss/hmsc)
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: timemean / timemax / timemin / timestd
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: pending
* mssn/mscs: similar sin/cos treatment, but for combined minute/second, with 1 hour periodicity
- useful for: datetime entries of single time scale combining time scales below minute threshold where periodicity is relevant
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: includes appenders for (hmss/hmsc)
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: timemean / timemax / timemin / timestd
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: pending
* dat6: default transformation set for time series data, returns:
'year', 'mdsn', 'mdcs', 'hmss', 'hmsc', 'bshr', 'wkdy', 'hldy'
- useful for: datetime entries of multiple time scales where periodicity is relevant, default date-time encoding, includes bins for holidays, business hours, and weekdays
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: includes appenders for ('year', 'mdsn', 'mdcs', 'hmss', 'hmsc', 'bshr', 'wkdy', 'hldy')
- assignparam parameters accepted:
- timezone: defaults to False as passthrough, otherwise can pass time zone abbreviation
(useful to consolidate different time zones such as for bus hr bins)
for list of pandas accepted abbreviations see pytz.all_timezones
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: meanyear / stdyear / mean_mdsn / mean_mdcs / mean_hmss / mean_hmsc
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: pending
### Date-Time Data Bins
* wkdy: boolean identifier indicating whether a datetime object is a weekday
- useful for: supplementing datetime encodings with weekday bins
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: '_wkdy' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: activationratio
- returned datatype: int8
- inversion available: pending
* wkds/wkdo: encoded weekdays 0-6, 'wkds' for one-hot via 'text', 'wkdo' for ordinal via 'ord3'
- useful for: ordinal version of preceding wkdy
- default infill: 7 (e.g. eight days a week)
- default NArowtype: datetime
- suffix appender: '_wkds' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: mon_ratio / tue_ratio / wed_ratio / thr_ratio / fri_ratio / sat_ratio /
sun_ratio / infill_ratio
- returned datatype: wkds as int8, wkdo as uint8
- inversion available: pending
* mnts/mnto: encoded months 1-12, 'mnts' for one-hot via 'text', 'mnto' for ordinal via 'ord3'
- useful for: supplementing datetime encodings with month bins
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: '_mnts' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: infill_ratio / jan_ratio / feb_ratio / mar_ratio / apr_ratio / may_ratio /
jun_ratio / jul_ratio / aug_ratio / sep_ratio / oct_ratio / nov_ratio / dec_ratio
- returned datatype: mnts as int8, mnto as uint8
- inversion available: pending
* bshr: boolean identifier indicating whether a datetime object falls within business
hours (9-5, time zone unaware)
- useful for: supplementing datetime encodings with business hour bins
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: '_bshr' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'start' and 'end', which default to 9 and 17
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: activationratio
- returned datatype: int8
- inversion available: pending
* hldy: boolean identifier indicating whether a datetime object is a US Federal
holiday
- useful for: supplementing datetime encodings with holiday bins
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: '_hldy' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'holiday_list', should be passed as a list of strings of dates of additional holidays to be recognized
e.g. ['2020/03/30']
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: activationratio
- returned datatype: int8
- inversion available: pending
### Differential Privacy Noise Injections
The DP family of transformations are for purposes of stochastic noise injection to train and/or test features. Noise is sampled by default with support of numpy.random (which as of version 1.17.0 defaults to the PCG pseudo random number generator). Supplemental entropy seedings or alternate random samplers can be applied with the automunge(.)/postmunge(.) parameters entropy_seeds and random_generator. The transforms default to injecting noise to training data and not test data, although trainnoise/testnoise parameters can be activated for any combination of the two. For cases where test data injections are not defaulted with the testnoise parameter, test data can be treated as train data for purposes of noise with the postmunge(.) traindata parameter. Please refer to the essay [Noise Injections with Automunge](https://medium.com/automunge/noise-injections-with-automunge-7ebb672216e2) for further detail.
Each of the DP root categories (e.g. DPnb, DPmm, DP**, etc) defaults to injecting noise to train data and not to test data (i.e. trainnoise=True, testnoise=False), however each have otherwise equivalent variations as DT root categories (e.g. DTnb, DTmm, DT**, etc) which default to injecting to test data and not to train data (i.e. trainnoise=False, testnoise=True), or as DB root categories (e.g. DBnb, DBmm, DB**, etc) which default to injecting to both train and test data (i.e. trainnoise=True, testnoise=True). In each case these defaults can be updated by parameter assigment.
Note that when passing parameters to a few of these functions (specifically the hashing variants), the transformation
category associated with the transformation function may be different than the root category, as noted below DPh1/DPh2/DPhs.
Note that DP transforms can be applied in conjunction with the automunge(.) or postmunge(.) noise_augment
parameter to automatically prepare additional concatenated duplicates as a form of data augmentation.
For distribution sampled numeric or weighted sampling categoric categories, the DP transforms have an option to scale different segments of a feature's noise profile to correspond to different attribute segments of an adjacent protected categoric feature, which is expected to benefit loss discrepency for the attributes of that protected feature.
* DPnb: applies a z-score normalization followed by a noise injection to train data sampled
from a Gaussian which defaults to 0 mu and 0.06 sigma, but only to a subset of the data based
on flip_prob parameter.
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream nmbr (as DPn3) cleans data
- default NArowtype: numeric
- suffix appender: '_DPn3_DPnb'
- assignparam parameters accepted:
- 'noisedistribution' as {'normal', 'laplace', 'uniform'}, defaults to normal, used to select between gaussian (normal), laplace, and uniform distributed noise, also accepts one of {'abs_normal', 'abs_laplace', 'abs_uniform', 'negabs_normal', 'negabs_laplace', 'negabs_uniform'}, where the prefix 'abs' refers to injecting only positive noise by taking absolute value of sampled noise, and the prefix negabs refers to injecting only negative noise by taking the negative absolute value of sampled noise
- 'flip_prob' for percent of entries receiving noise injection, defaults to 0.03
- 'mu' for noise mean, defaults to 0
- 'sigma' for noise scale, defaults to 0.06 - note that for uniform sampling high is (sigma-mu) and low is (mu-sigma)
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- parameters should be passed to 'DPnb' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- 'rescale_sigmas': defaults as False, True rescales sigma specifications based on standard deviation of feature in training set (this option intended for use in conjunction with DPne which injects numeric noise without applying a preceding normalization)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_noisedistribution, test_flip_prob, test_mu, test_sigma}, which otherwise default to test_noisedistribution, test_mu, and test_flip_prob matching the train data parameters and test_sigma=0.03
- please note that each of the noise distribution parameters {sigma, flip_prob, test_sigma, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {mu, sigma, flip_prob, test_mu, test_sigma, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- 'protected_feature' defaults to False, accepts input column header string specifiation, scales different segments of this transform's target feature's noise profile to correspond to different attribute segments of specified adjacent protected categoric feature, which the hypothesis is that this may benefit loss discrepency for the attributes of that protected feature
- driftreport postmunge metrics: mu, sigma for DPnm, upstream z score via nmbr for others
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
* DPmm: applies a min-max scaling followed by a noise injection to train data sampled
from a Gaussian which defaults to 0 mu and 0.03 sigma. Note that noise is scaled to ensure output
remains in range 0-1 (by scaling neg noise when scaled input <0.5 and scaling pos noise when scaled input >0.5)
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream mnmx (as DPm2) cleans data
- default NArowtype: numeric
- suffix appender: '_DPm2_DPmm'
- assignparam parameters accepted:
- 'noisedistribution' as {'normal', 'laplace', 'uniform'}, defaults to normal, used to select between gaussian (normal), laplace, and uniform distributed noise, also accepts one of {'abs_normal', 'abs_laplace', 'abs_uniform', 'negabs_normal', 'negabs_laplace', 'negabs_uniform'}, where the prefix 'abs' refers to injecting only positive noise by taking absolute value of sampled noise, and the prefix negabs refers to injecting only negative noise by taking the negative absolute value of sampled noise. *Note that we recommend deactivating parameter noise_scaling_bias_offset in conjunction with abs or negabs scenarios, otherwise the sampled mean will be shifted resulting in noise with zero mean.
- 'flip_prob' for percent of entries receiving noise injection, defaults to 0.03
- 'mu' for noise mean, defaults to 0
- 'sigma' for noise scale, defaults to 0.03 - note that for uniform sampling high is (sigma-mu) and low is (mu-sigma)
- 'noise_scaling_bias_offset', boolean defaulting to True, activates an evaluation of scaled noise to offset the sampled noise mean to closer approximate a resulting zero mean for the scaled noise (helps to mitigate potential for bias from noise scaling in cases of imbalanced feature distribution).
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- parameters should be passed to 'DPmm' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_noisedistribution, test_flip_prob, test_mu, test_sigma}, which otherwise default to test_noisedistribution, test_mu, and test_flip_prob matching the train data parameters and test_sigma=0.02
- please note that each of the noise distribution parameters {sigma, flip_prob, test_sigma, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {mu, sigma, flip_prob, test_mu, test_sigma, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- 'protected_feature' defaults to False, accepts input column header string specifiation, scales different segments of this transform's target feature's noise profile to correspond to different attribute segments of specified adjacent protected categoric feature, which the hypothesis is that this may benefit loss discrepency for the attributes of that protected feature
- driftreport postmunge metrics: mu, sigma for DPnm, upstream minmax via mnmx for others
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
* DPrt: applies a retn normalization with a noise injection to train data sampled
from a Gaussian which defaults to 0 mu and 0.03 sigma. Note that noise is scaled to ensure output
remains in range 0-1 (by scaling neg noise when scaled and centered input <0.5 and scaling pos noise when scaled and centered input >0.5)
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: comparable to retn with mean (calculated before noise injection)
- suffix appender: '_DPrt' in base configuration or based on the family tree category
- assignparam parameters accepted:
- parameters comparable to retn divisor / offset / multiplier / cap / floor / stdev_cap defaulting to 'minmax'/0/1/False/False/False, also
- 'noisedistribution' as {'normal', 'laplace', 'uniform'}, defaults to normal, used to select between gaussian (normal), laplace, and uniform distributed noise, also accepts one of {'abs_normal', 'abs_laplace', 'abs_uniform', 'negabs_normal', 'negabs_laplace', 'negabs_uniform'}, where the prefix 'abs' refers to injecting only positive noise by taking absolute value of sampled noise, and the prefix negabs refers to injecting only negative noise by taking the negative absolute value of sampled noise. *Note that we recommend deactivating parameter noise_scaling_bias_offset in conjunction with abs or negabs scenarios, otherwise the sampled mean will be shifted resulting in noise with zero mean.
- 'mu' for noise mean, defaults to 0,
- 'sigma' for noise scale, defaults to 0.03 - note that for uniform sampling high is (sigma-mu) and low is (mu-sigma)
- 'flip_prob' for percent of entries receiving noise injection, defaults to 0.03
- 'noise_scaling_bias_offset', boolean defaulting to True, activates an evaluation of scaled noise to offset the sampled noise mean to closer approximate a resulting zero mean for the scaled noise (helps to mitigate potential for bias from noise scaling in cases of imbalanced feature distribution)
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- Parameters should be passed to 'DPrt' transformation category from family tree.
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_noisedistribution, test_flip_prob, test_mu, test_sigma}, which otherwise default to test_noisedistribution, test_mu, and test_flip_prob matching the train data parameters and test_sigma=0.02
- please note that each of the noise distribution parameters {sigma, flip_prob, test_sigma, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {mu, sigma, flip_prob, test_mu, test_sigma, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- 'protected_feature' defaults to False, accepts input column header string specifiation, scales different segments of this transform's target feature's noise profile to correspond to different attribute segments of specified adjacent protected categoric feature, which the hypothesis is that this may benefit loss discrepency for the attributes of that protected feature
- driftreport postmunge metrics: mu, sigma, flip_prob for DPrt, also metrics comparable to retn
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
* DLmm/DLnb/DLrt: comparable to DPmm/DPnb/DPrt but defaults to laplace distributed noise instead of gaussian (normal)
with same parameters accepted (where mu is center of noise, sigma is scale, and flip-prob is ratio)
and with same default parameter values
* DPqt/DPbx: numeric noise injections with distribution conversions by the qttf/bxcx transforms
* DPbn: applies a two value binary encoding (bnry) followed by a noise injection to train data which
flips the activation per parameter flip_prob which defaults to 0.03
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream bnry (as DPb2) cleans data
- default NArowtype: justNaN
- suffix appender: '_DPb2_DPbn'
- assignparam parameters accepted:
- 'flip_prob' for percent of activation flips (defaults to 0.03),
- 'weighted' boolean defaults to True for weighted noise sampling from set of unique entries in train data. When False
noise sampling is by a uniform draw from set of unique entries as found in train data (which is a little more computationally efficient).
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- noise injection parameters should be passed to 'DPbn' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_flip_prob, test_weighted}, which otherwise default to test_weighted matching the train data and test_flip_prob = 0.01
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- 'protected_feature' defaults to False, accepts input column header string specifiation, scales different segments of this transform's target feature's noise profile to correspond to different attribute segments of specified adjacent protected categoric feature, which the hypothesis is that this may benefit loss discrepency for the attributes of that protected feature
- driftreport postmunge metrics: flip_prob for DPbn, upstream binary via bnry for others
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
* DPod: applies an ordinal encoding (ord3) followed by a noise injection to train data which
flips the activations per parameter flip_prob which defaults to 0.03 to a weighted random draw from the
set of activations (including the current activation so actual flip percent is < flip_prob based
on number of activations)
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream ord3 (as DPo4) cleans data
- default NArowtype: justNaN
- suffix appender: '_DPo4_DPod'
- assignparam parameters accepted:
- 'flip_prob' for percent of activation flips (defaults to 0.03),
- 'weighted' boolean defaults to True for weighted noise sampling from set of unique entries in train data. When False
noise sampling is by a uniform draw from set of unique entries as found in train data (which is a little more computationally efficient).
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- noise injection parameters should be passed to 'DPod' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- 'passthrough': defaults to False, when True the data type conversion is turned off to allow DPod to be applie for pass-through categoric
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_flip_prob, test_weighted}, which otherwise default to test_weighted matching the train data and test_flip_prob = 0.01
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- 'protected_feature' defaults to False, accepts input column header string specifiation, scales different segments of this transform's target feature's noise profile to correspond to different attribute segments of specified adjacent protected categoric feature, which the hypothesis is that this may benefit loss discrepency for the attributes of that protected feature
- driftreport postmunge metrics: flip_prob for DPod, upstream ordinal via ord3 for others
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes
* DPoh: applies a one hot encoding followed by a noise injection to train data which
flips the activations per parameter flip_prob which defaults to 0.03 to a weighted random draw from the
set of activations (including the current activation so actual flip percent is < flip_prob based
on number of activations). Note that assignparam for noise injection
can be passed directly to DPoh.
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream ord3 (as DPo5) cleans data
- default NArowtype: justNaN
- suffix appender: 'DPo5\_#\_DPoh' where # is integer for each categoric entry
- assignparam parameters accepted:
- 'flip_prob' for percent of activation flips (defaults to 0.03),
- 'weighted' boolean defaults to True for weighted noise sampling from set of unique entries in train data. When False
noise sampling is by a uniform draw from set of unique entries as found in train data (which is a little more computationally efficient).
- 'swap_noise' boolean defaults False, instead of a random flip to alternate activation, randomly samples from feature rows. Has a similar effect as weighted sampling, however when injecting to test data requires multiple samples for comparable effect
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- noise injection parameters should be passed to 'DPo2' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_flip_prob, test_weighted}, which otherwise default to test_weighted matching the train data and test_flip_prob = 0.01
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- 'protected_feature' defaults to False, accepts input column header string specifiation, scales different segments of this transform's target feature's noise profile to correspond to different attribute segments of specified adjacent protected categoric feature, which the hypothesis is that this may benefit loss discrepency for the attributes of that protected feature
- driftreport postmunge metrics: comparable to onht
- returned datatype: int8
- inversion available: yes
* DP10: applies a binarization followed by a noise injection to train data which
flips the activations per parameter flip_prob which defaults to 0.03 to a weighted random draw from the
set of activations (including the current activation so actual flip percent is < flip_prob based
on number of activations). Note that assignparam for noise injection
can be passed directly to DP10.
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream ord3 (as DPo6) cleans data
- default NArowtype: justNaN
- suffix appender: 'DPo6\_#\_DP10' where # is integer for each column which collectively encode categoric entries
- assignparam parameters accepted:
- 'flip_prob' for percent of activation flips (defaults to 0.03),
- 'weighted' boolean defaults to True for weighted noise sampling from set of unique entries in train data. When False
noise sampling is by a uniform draw from set of unique entries as found in train data (which is a little more computationally efficient).
- 'swap_noise' boolean defaults False, instead of a random flip to alternate activation, randomly samples from feature rows. Has a similar effect as weighted sampling, however when injecting to test data requires multiple samples for comparable effect
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- noise injection parameters should be passed to 'DPo3' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_flip_prob, test_weighted}, which otherwise default to test_weighted matching the train data and test_flip_prob = 0.01
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- 'protected_feature' defaults to False, accepts input column header string specifiation, scales different segments of this transform's target feature's noise profile to correspond to different attribute segments of specified adjacent protected categoric feature, which the hypothesis is that this may benefit loss discrepency for the attributes of that protected feature
- driftreport postmunge metrics: comparable to 1010
- returned datatype: int8
- inversion available: yes
* DPh1: applies a multi column hash binarization via hs10 followed by a multi column categoric noise injection via DPmc, which
flips the activation sets per parameter flip_prob which defaults to 0.03 to a weighted random draw from the
set of activation sets (including the current activation set so actual flip percent is < flip_prob based
on number of activations). Note that assignparam for noise injection
can be passed to the intermediate category DPo3 which applies the DPod transform. Defaults to weighted sampling.
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream hs10 cleans data
- default NArowtype: justNaN
- suffix appender: '\DPh1\_#\_DPmc' where # is integer for each column which collectively encode categoric entries
- assignparam parameters accepted:
- 'flip_prob' for percent of activation flips (defaults to 0.03),
- 'swap_noise' boolean defaults False, instead of a random flip to alternate activation, randomly samples from feature rows. Has a similar effect as weighted sampling, however when injecting to test data requires multiple samples for comparable effect
- 'weighted' boolean defaults to True for weighted noise sampling from set of unique entries in train data. When False
noise sampling is by a uniform draw from set of unique entries as found in train data (which is a little more computationally efficient).
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- noise injection parameters should be passed to 'DPmc' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_flip_prob, test_weighted}, which otherwise default to test_weighted matching the train data and test_flip_prob = 0.01
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- 'protected_feature' defaults to False, accepts input column header string specifiation, scales different segments of this transform's target feature's noise profile to correspond to different attribute segments of specified adjacent protected categoric feature, which the hypothesis is that this may benefit loss discrepency for the attributes of that protected feature
- driftreport postmunge metrics: hs10 metrics
- returned datatype: int8
- inversion available: yes
* DPhs: applies a multi column hash binarization via hash followed by a multi column categoric noise injection via mlhs, which
flips the activations in each column individually per parameter flip_prob which defaults to 0.03 to a weighted random draw from the
set of activations (including the current activation so actual flip percent is < flip_prob based
on number of activations). assign_param for mlhs requires passing parameters to DPod through the mlti assignparam norm_params as noted below, and any noise distribution parameters should be redundantly passed to the mlhs call for purposes of setting entropy seeds. For example:
```
assignparam = {'mlhs' :
{'targetinputcolumn' :
{'testnoise' : True,
'norm_params' : {'testnoise' : True}}}}
```
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream hs10 cleans data
- default NArowtype: justNaN
- suffix appender: '\DPhs\_#\_mlhs\_DPod' where # is integer for each column which collectively encode categoric entries
- assignparam parameters accepted:
- 'flip_prob' for percent of activation flips (defaults to 0.03),
- 'weighted' boolean defaults to True for weighted noise sampling from set of unique entries in train data. When False
noise sampling is by a uniform draw from set of unique entries as found in train data (which is a little more computationally efficient).
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- DPod noise injection assignparam parameters can be passed to the mlhs parameter 'norm_params' embedded in a dictionary (e.g. assignparam = {'mlhs' : {inputcolumn : {'norm_params' : {'flip_prob' : 0.05}}}} ) Defaults to weighted sampling. (The norm_params approach is associated with use of the mlti transform which is what mlhs applies)
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_flip_prob, test_weighted}, which otherwise default to test_weighted matching the train data and test_flip_prob = 0.01
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- 'protected_feature' defaults to False, accepts input column header string specifiation, scales different segments of this transform's target feature's noise profile to correspond to different attribute segments of specified adjacent protected categoric feature, which the hypothesis is that this may benefit loss discrepency for the attributes of that protected feature
- driftreport postmunge metrics: hash metrics
- returned datatype: conditional integer based on hashing vocab size
- inversion available: yes
* DPh2: applies a single column hash binarization via hsh2 followed by a single column categoric noise injection via DPod function (as DPo7), which
flips the activations per parameter flip_prob which defaults to 0.03 to a weighted random draw from the
set of activations (including the current activation so actual flip percent is < flip_prob based
on number of activations).
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream hs10 cleans data
- default NArowtype: justNaN
- suffix appender: '\DPh2\_DPo7'
- assignparam parameters accepted:
- 'flip_prob' for percent of activation flips (defaults to 0.03),
- 'weighted' boolean defaults to True for weighted noise sampling from set of unique entries in train data. When False
noise sampling is by a uniform draw from set of unique entries as found in train data (which is a little more computationally efficient).
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- noise injection parameters should be passed to 'DPo7' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_flip_prob, test_weighted}, which otherwise default to test_weighted matching the train data and test_flip_prob = 0.01
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- 'protected_feature' defaults to False, accepts input column header string specifiation, scales different segments of this transform's target feature's noise profile to correspond to different attribute segments of specified adjacent protected categoric feature, which the hypothesis is that this may benefit loss discrepency for the attributes of that protected feature
- driftreport postmunge metrics: hash metrics
- returned datatype: conditional integer based on hashing vocab size
- inversion available: yes
* DPns: applies a z-score normalization via nmbr followed by a swap_noise injection by DPmc, which for noise targets randomly samples between other rows in the feature. Swap noise is an alternate convention than the distribution sampling applied in DPnb.
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream transform cleans data
- default NArowtype: justNaN
- suffix appender: '\DPn4\_DPns'
- assignparam parameters accepted:
- 'flip_prob' for percent of activation flips (defaults to 0.03),
- 'swap_noise' boolean defaults True, randomly samples from rows (we don't recommend the False scenario when applied downstream of continuous features which is intended for injection to categoric features)
- 'weighted' - not supported in conjunction with swap_noise = True
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- noise injection parameters should be passed to 'DPmc' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_flip_prob, test_weighted}, which otherwise default to test_weighted matching the train data and test_flip_prob = 0.01
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- driftreport postmunge metrics: nmbr metrics
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
* DP1s: applies a 1010 binarization followed by a swap_noise injection by DPmc, which for noise targets randomly samples between other rows in the feature. Swap noise is an alternate convention than the weighted sampling applied in DP10.
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream transform cleans data
- default NArowtype: justNaN
- suffix appender: 'DPo8\_#\_DP1s' where # is integer for each column which collectively encode categoric entries
- assignparam parameters accepted:
- 'flip_prob' for percent of activation flips (defaults to 0.03),
- 'swap_noise' boolean defaults True, randomly samples from rows (the False scenario results in an encoding comparable to DP10)
- 'weighted' - not supported in conjunction with swap_noise = True
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- noise injection parameters should be passed to 'DPmc' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_flip_prob, test_weighted}, which otherwise default to test_weighted matching the train data and test_flip_prob = 0.01
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- driftreport postmunge metrics: 1010 metrics
- returned datatype: int8
- inversion available: yes
* DPsk: applies a masking of sampled entries with a mask_value defaulting to the integer 0. As configured in default process_dict specification treats data as full pass-through without NArow aggregation or infill, similar to DPne and DPse noted below. Can also be used to add discrete noise to continuous features by the additive parameter.
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: does notapply infill
- default NArowtype: exclude
- suffix appender: '_DPsk'
- assignparam parameters accepted:
- 'mask_value' the value injected to masked entries, defaults to integer 0
- 'additive' boolean defaults as False, for adding discrete noise to continuous numeric features, results in mask value being added to selected entries instead of replaced
- 'flip_prob' for percent of activation flips (defaults to 0.03),
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- noise injection parameters should be passed to 'DPsk' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_flip_prob}, which otherwise default to test_flip_prob = 0.01
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- driftreport postmunge metrics: mask_value, other noise parameters
- returned datatype: consistent with input
- inversion available: yes
* DPse: for full pass-through other than swap noise injection (i.e. may be applied to numeric or categoric features with string entries). Comparable parameters supported to DPmc (swap_noise defaults to True). Only other edits are suffix appender on the returned column header. Excluded from ML infill and NArw aggregation. DPse may be suitable for incorporating noise injections to categoric test features into a prior prepared pipeline. A similar pass-through transform for numeric features with distribution sampled injections is available as DPne as noted above. Note that this can be applied to multi-column input sets by assigncat specification that replaces a single input header string with a {set} of input header strings.
* DPpc: for full pass-through other than weighted categoric injection (may be applie to categoric features with both numeric and string entries). Comparable parameter support to DPod (passthrough defaults to True). Excluded from ML infill and NArw aggregation. DPpc is an alternate to DPse for passthrough noise to categoric sets that fits the noise weightings to the train data as opposed to mathcing the train or test profile. Also has benefit fo protected_feature support.
* DPmp: similar to DPpc but can be applied to multi-column sets, such as e.g. to inject noise into one hot encoded categoric features. Can be applied to multi-column input sets by assigncat specification that replaces a single input header string with a {set} of input header strings.
* DPne: for full pass-through other than numeric noise injection (i.e. no normalization applied). Comparable parameters supported to DPnb, samples gaussian by default also has laplace support. Note that for DPne the rescale_sigmas option defaults to True such that specified sigma parameters are rescaled by multiplication with the training set standard deviation, thus allowing common default sigma options independant of feature scale. For user specified sigma parameters they will also be rescaled unless rescale_sigmas has been deactivated. Only other edits to returned feature other than noise injection are conversion to float dtype / non numeric to NaN and suffix appender on the returned column header. Excluded from ML infill and NArw aggregation. DPne may be suitable for incorporating noise injections to numeric test features into a prior prepared pipeline. Includes protected_feature support.
Please note that DPse (passthrough swap noise e.g. for categoric), DPne (passthrough gaussian or laplace noise for numeric), DPsk (passthrough mask noise for numeric or categoric), and excl (passthrough without noise) can be used in tandem to pass a dataframe to automunge(.) for noise injection without other edits or infill, such as could be used to incorporate noise into an existing tabular pipeline. When limited to these three root categories the returned dataframe will match the same order of columns with only edits other than noise as updated column headers and DPne will overide any data types other than float. (To retain same order of rows can deactivate shuffletrain parameter.)
### Misc. Functions
* excl: passes source column un-altered, no transforms, data type conversion, or infill. The feature is excluded from ML infill basis of all other features. If a passthrough column is desired to be included in ML infill basis for surrounding features, it should instead be passed to one of the other passthrough transforms, such as exc2 for continuous numeric, exc5 for ordinal encoded integers, or exc8 for continuous integers. Data returned from excl may be non-numeric. excl has a special suffix convention in the library in that the column is returned without a suffix appender (to signify full pass-through), if suffix retention is desired it is available by the automunge(.) excl_suffix parameter.
Note that for assignnan designation of infill conversions, excl is excluded from 'global' assignments
(although may still be assigned explicitly under assignnan columns or categories entries). excl also retains original form of entries that for other transforms are converted to missing data markers, such as None or inf.
- useful for: full passthrough sets
- default infill: none
- default NArowtype: exclude
- suffix appender: None or '\_excl' (dependent on automunge(.) excl_suffix parameter)
- assignparam parameters accepted: none
- driftreport postmunge metrics: none
- returned datatype: retains data type of received data
- inversion available: yes
* exc2/exc3/exc4/exc6: passes source column unaltered other than force to numeric, adjinfill applied
(exc3 and exc4 have downstream standard deviation or power of 10 bins aggregated such as may be beneficial
when applying TrainLabelFreqLevel to a numeric label set). For use without NArw aggregation use exc6/
- useful for: numeric pass-through sets, feature included in surrounding ML infill models
- default infill: adjinfill
- default NArowtype: numeric
- suffix appender: '_exc2' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: none
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
* exc5/exc8: passes source column unaltered other than force to numeric, adjinfill applied for non-integers. exc5 is for ordinal encoded integers, exc8 is for continuous integers. For use without NArw aggregation use exc7/exc9
- useful for: passthrough integer sets, feature included in surrounding ML infill models
- default infill: adjinfill
- default NArowtype: integer
- suffix appender: '_exc5' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- 'integertype': sets the convention for returned datatype exc5 defaults to 'singlct', exc8 defaults to 'integer'
- driftreport postmunge metrics: none
- returned datatype: exc5 is conditional uint based on size of encoding space, exc8 is int32
- inversion available: yes
* eval: performs data property evaluation consistent with default automation to designated column
- useful for: applying automated evaluation to distinct columns for cases where default automated evaluation turned off by powertransform='excl'
- default infill: based on evaluation
- default NArowtype: based on evaluation
- suffix appender: based on evaluation
- assignparam parameters accepted: none
- driftreport postmunge metrics: none
- returned datatype: based on transformation applied
- inversion available: contingent on result
* ptfm: performs distribution property evaluation consistent with the automunge powertransform
parameter activated to designated column
- useful for: applying automated powertransform evaluation to distinct columns
- default infill: based on evaluation
- default NArowtype: based on evaluation
- suffix appender: based on evaluation
- assignparam parameters accepted: none
- driftreport postmunge metrics: none
- returned datatype: based on transformation applied
- inversion available: contingent on result
* copy: create new copy of column, may be used when applying the same transform to same column more
than once with different parameters as an alternate to defining a distinct category processdict entry for each redundant application.
This also may be useful when defining a family tree where the shortest path isn't the desired inversion path, in which case
can add some intermediate copy operations to shortest path until inversion selects the desired path
(as inversion operates on heuristic of selecting shortest transformation path with full information retention,
unless full information retention isn't available then the shortest path without full information retention).
Does not prepare column for ML on its own (e.g. returned data will carry forward non-numeric entries and will not conduct infill).
- default infill: exclude
- default NArowtype: exclude
- suffix appender: '_copy' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: none
- returned datatype: consistent with input
- inversion available: yes
* shfl: shuffles the values of a column based on passed randomseed (Note that returned data may not
be numeric and predictive methods like ML infill and feature selection may not work for that scenario
unless an additional transform is applied downstream.)
- useful for: shuffle useful to negate feature from influencing inference
- default infill: naninfill
- default NArowtype: justNAN
- suffix appender: '_shfl' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: none
- returned datatype: consistent with input
- inversion available: no
* mlti: mlti is a category that may take as input a set of one or more columns returned from an upstream transform, for example this could be a multi-column set returned from a concurrent_nmbr containing multiple columns of continuous numeric entries (or otherwise take a single column input when applied to an upstream primitive). mlti applies a normalization to each of the columns on an independent basis. The normalization defaults to z-score via nmbr or alternate transforms may be designated by assignparam. (Currently mlti is not defined as a root category, but is available for use as a tree category.) mlti is defined in process_dict based on concurrent_nmbr MLinfilltype. mlti may be used to apply an arbitrary transformation category to each column from a set of columns returned from a transform (such as for a concurrent MLinfilltype). The MLinfilltype basis for mlti is concurrent_nmbr, meaning it assumes returned columns are continuous numeric. For concurrent_ordl MLinfilltype can either overwrite processdict or make use of mlto. Returned concurrent_act support is available by overwriting the processdict entry.
- useful for: normalizing a set of numeric features returned from an upstream transform
- default infill: consistent with the type of normalization selected
- default NArowtype: justNaN
- suffix appender: '\_mlti\_' + suffix associated with the normalization
- assignparam parameters accepted:
- 'norm_category': defaults to 'nmbr', used to specify type of normalization applied to each column. Used to access transformation functions from process_dict.
- 'norm_params': defaults to empty dictionary {}, used to pass parameters to the normalization transform, e.g. as {parameter : value}. Note that parameters can also be passed to the norm_category through the assignparam automunge(.) parameter, with any specifications (such as to global_assignparam or default_assignparam) taking precedence over specifications through norm_params.
- 'dtype': accepts one of {'float', 'conditionalinteger', 'mlhs'}, defaults to float. conditionalinteger is for use with mlto. 'mlhs' is for use with mlhs.
- driftreport postmunge metrics: records drift report metrics included with the normalization transform
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: based on normalization transform inversion (if norm_category does not support inversion a passthrough inversion is applied)
* mlto: comparable to mlti but intended for use with returning multiple ordinal encoded columns. mlto is defined in process_dict based on concurrent_ordl MLinfilltype.
- useful for: ordinal encoding a set of categoric features returned from an upstream transform
- default infill: consistent with the type of ordinal encoding selected
- default NArowtype: justNaN
- suffix appender: '\_mlto\_' + suffix associated with the normalization
- assignparam parameters accepted:
- 'norm_category': defaults to 'ord3', used to specify type of ordinal encoding applied to each column. Used to access transformation functions from process_dict.
- 'norm_params': defaults to empty dictionary {}, used to pass parameters to the normalization transform, e.g. as {parameter : value}
- 'dtype': accepts one of {'float', 'conditionalinteger', 'mlhs'}, defaults to conditionalinteger.
- driftreport postmunge metrics: records drift report metrics included with the normalization transform
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: based on normalization transform inversion (if norm_category does not support inversion a passthrough inversion is applied)
* bnst/bnso: intended for use downstream of multicolumn boolean integer sets, such as those returned from MLinfilltype multirt, 1010, concurrent_act. bnst serves to aggregate the multicolumn representation into a single column encoding. bnst returns a string representation, bnso performs a downstream ordinal encoding. Intended for sets with boolean integer entries.
- useful for: some downstream libraries prefer label sets in single column representations. This allows user to convert a multicolumn to single column for this or some other purpose.
- default infill: zeroinfill (assumes infill performed upstream.)
- default NArowtype: justNaN
- suffix appender: '_bnst'
- assignparam parameters accepted:
- suffix: defaults to tree category, accepts string
- upstreaminteger: defaults to True for boolean integer input, when False can receive other single character entries, although inversion not supported for the False scenario
- driftreport postmunge metrics: none
- returned datatype: bnst returns string, bnso conditional integer per downstream ordinal encoding
- inversion available: supported for upstreaminteger True scenario, False performs a passthrough inversion without recovery
* GPS1: for converting sets of GPS coordinates to normalized latitude and longitude, relies on comma separated inputs, with latitude/longitude reported as DDMM.... or DDDMM.... and direction as one of 'N'/'S' or 'E'/'W'. Note that with GPS data, depending on the application, there may be benefit to setting the automunge(.) floatprecision parameter to 64 instead of the default 32. If you want to apply ML infill or some other assigninfill on the returned sets, we recommend ensuring missing data is received as NaN, otherwise missing entries will receive adjinfill.
- useful for: converting GPS coordinates to normalized latitude and normalized longitude
- default infill: adjinfill
- default NArowtype: justNaN
- suffix appender: \_GPS1\_latt\_mlti\_nmbr and \_GPS1\_long\_mlti\_nmbr
- assignparam parameters accepted:
- 'GPS_convention': accept one of {'default', 'nonunique'}, under default all rows are individually parsed. nonunique is used in GPS3 and GPS4.
- 'comma_addresses': accepts as list of 4 integers, defaulting to [2,3,4,5], which corresponds to default where latitude located after comma 2, latitude direction after comma 3, longitude after comma 4, longitude direction after comma 5
- 'comma_count': an integer, defaulting to 14, used in inversion to pad out commas on the recovered data format
- driftreport postmunge metrics: metrics included with the downstream normalization transforms
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with partial recovery e.g. for default configuration recovers data in the form ",,DDMM.MMMMMMM,C,DDMM.MMMMMMM,C,,,,,,,,," (where C is the direction)
* GPS2: comparable to GPS1 but without the downstream normalization, so returns floats in units of arc minutes. (If you want missing data returned as NaN instead of adjinfill, can set process_dict entry NArowtype to 'exclude'.)
* GPS3: comparable to GPS1, including downstream normalization, but only unique entries are parsed instead of all rows. Parses unique entries in both the train and test set. This may benefit latency in cases of redundant entries.
* GPS4: comparable to GPS1, including downstream normalization, but only unique entries are parsed instead of all rows. Parses unique entries in the train set and relies on assumption that the set of unique entries in test set will be the same or a subset of the train set, which may benefit latency for this scenario.
* GPS5: comparable to GPS3 but performs a downstream ordinal encoding instead of normalization, as may be desired when treating a fixed range of GPS coordinates as a categoric feature, latitude and longitude encoded separately.
* GPS6: comparable to GPS3 but performs both a downstream ordinal encoding and a downstream normalization, such as to treat latitude and longitude both as categoric and continuous numeric features. This is probably a better default than GPS3 or GPS5 for fixed range of entries.
* NArw: produces a column of boolean integer identifiers for rows in the source
column with missing or improperly formatted values. Note that when NArw
is assigned in a family tree it bases NArowtype on the root category,
when NArw is passed as the root category it bases NArowtype on default.
- useful for: supplementing any transform with marker for missing entries. On by default by NArw_marker parameter
- default infill: not applicable
- default NArowtype: justNaN
- suffix appender: '_NArw' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: pct_NArw
- returned datatype: int8
- inversion available: no
* NAr2: produces a column of boolean identifiers for rows in the source
column with missing or improperly formatted values.
- useful for: similar to NArw but different default NArwtype for when used as a root category
- default infill: not applicable
- default NArowtype: numeric
- suffix appender: '_NAr2' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: pct_NArw
- returned datatype: int8
- inversion available: no
* NAr3: produces a column of boolean identifiers for rows in the source
column with missing or improperly formatted values.
- useful for: similar to NArw but different default NArwtype for when used as a root category
- default infill: not applicable
- default NArowtype: positivenumeric
- suffix appender: '_NAr3' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: pct_NArw
- returned datatype: int8
- inversion available: no
* NAr4: produces a column of boolean identifiers for rows in the source
column with missing or improperly formatted values.
- useful for: similar to NArw but different default NArwtype for when used as a root category
- default infill: not applicable
- default NArowtype: nonnegativenumeric
- suffix appender: '_NAr4' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: pct_NArw
- returned datatype: int8
- inversion available: no
* NAr5: produces a column of boolean identifiers for rows in the source
column with missing or improperly formatted values.
- useful for: similar to NArw but different default NArwtype for when used as a root category
- default infill: not applicable
- default NArowtype: integer
- suffix appender: '_NAr5' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: pct_NArw
- returned datatype: int8
- inversion available: no
* null: deletes source column
- default infill: none
- default NArowtype: exclude
- no suffix appender, column deleted
- assignparam parameters accepted: none
- driftreport postmunge metrics: none
- returned datatype: N/A
- inversion available: no
### Parsed Categoric Encodings
Please note I recommend caution on using splt/spl2/spl5/spl6 transforms on categorical
sets that may include scientific units for instance, as prefixes will not be noted
for overlaps, e.g. this wouldn't distinguish between kilometer and meter for instance.
Note that overlap lengths below 5 characters are ignored unless that value is overridden
by passing 'minsplit' parameter through assignparam. Further detail on parsed categoric
encodings provided in the essay [Parsed Categoric Encodings with Automunge](https://medium.com/automunge/string-theory-acbd208eb8ca).
* splt: searches categorical sets for overlaps between string character subsets and returns new boolean column
for identified overlap categories. Note this treats numeric values as strings e.g. 1.3 = '1.3'.
Note that priority is given to overlaps of higher length, and by default overlap go down to 5 character length.
- useful for: extracting grammatical structure shared between entries
- default infill: none
- default NArowtype: justNaN
- suffix appender: '\_splt\_##*##' where ##*## is target identified string overlap
- assignparam parameters accepted:
- 'minsplit': indicating lowest character length for recognized overlaps
- 'space_and_punctuation': True/False, defaults to True, when passed as
False character overlaps are not recorded which include space or punctuation
based on characters in excluded_characters parameter
- 'excluded_characters': a list of strings which are excluded from overlap
identification when space_and_punctuation set as False, defaults to
`[' ', ',', '.', '?', '!', '(', ')']`
- 'concurrent_activations': defaults as False, True makes comparable to sp15,
although recommend using sp15 instead for correct MLinfilltype
- 'suffix': returned column suffix appender, defaults to 'splt'
- 'int_headers': True/False, defaults as False, when True returned column headers
are encoded with integers, such as for privacy preserving of data contents
- 'test_same_as_train': defaults False, True makes this comparable to spl8
- driftreport postmunge metrics: overlap_dict / splt_newcolumns_splt / minsplit
- returned datatype: int8
- inversion available: yes with partial recovery
* sp15: similar to splt, but allows concurrent activations for multiple detected overlaps (spelled sp-fifteen)
Note that this version runs risk of high dimensionality of returned data in comparison to splt.
- useful for: extracting grammatical structure shared between entries with increased information retention vs splt
- default infill: none
- default NArowtype: justNaN
- suffix appender: '\_sp15\_##*##' where ##*## is target identified string overlap
- assignparam parameters accepted:
- comparable to splt, with concurrent_activations as True
- driftreport postmunge metrics: overlap_dict / splt_newcolumns_sp15 / minsplit
- returned datatype: int8
- inversion available: yes with partial recovery
* sp19: comparable to sp15, but with returned columns aggregated by a binary encoding to reduce dimensionality
- useful for: extracting grammatical structure shared between entries with decreased dimensionality vs sp15
- default infill: distinct encoding
- default NArowtype: justNaN
- suffix appender: '\_sp19\_#' where # is integer associated with the encoding
- assignparam parameters accepted: comparable to sp15
- driftreport postmunge metrics: comparable to sp15 with addition of _1010_activations_dict for activation ratios
- returned datatype: int8
- inversion available: yes with partial recovery
* sbst: similar to sp15, but only detects string overlaps shared between full unique entries and subsets of longer character length entries
- useful for: extracting cases of overlap between full entries and subsets of other entries
- default infill: none
- default NArowtype: justNaN
- suffix appender: '\_sbst\_##*##' where ##*## is target identified string overlap
- assignparam parameters accepted:
- 'int_headers': True/False, defaults as False, when True returned column headers
are encoded with integers, such as for privacy preserving of data contents
- 'minsplit': indicating lowest character length for recognized overlaps, defaults to 1
- 'concurrent_activations': True/False, defaults to True, when True
entries may have activations for multiple simultaneous overlaps
- 'test_same_as_train': defaults False, True makes this comparable to sbs2
- 'suffix': returned column suffix appender, defaults to 'sbst'
- driftreport postmunge metrics: overlap_dict / splt_newcolumns_sbst / minsplit
- returned datatype: int8
- inversion available: yes with partial recovery
* sbs3: comparable to sbst, but with returned columns aggregated by a binary encoding to reduce dimensionality
- useful for: binary version of sbst for reduced dimensionality
- default infill: distinct encoding
- default NArowtype: justNaN
- suffix appender: '\_sbs3\_#' where # is integer associated with the encoding
- assignparam parameters accepted: comparable to sbst
- driftreport postmunge metrics: comparable to sbst with addition of _1010_activations_dict for activation ratios
- returned datatype: int8
- inversion available: yes with partial recovery
* spl2/ors2/ors6/txt3: similar to splt, but instead of creating new column identifier it replaces categorical
entries with the abbreviated string overlap
- useful for: similar to splt but returns single column, used in aggregations like or19
- default infill: none
- default NArowtype: justNaN
- suffix appender: '_spl2' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'minsplit': indicating lowest character length for recognized overlaps
- 'space_and_punctuation': True/False, defaults to True, when passed as
False character overlaps are not recorded which include space or punctuation
based on characters in excluded_characters parameter
- 'excluded_characters': a list of strings which are excluded from overlap
identification when space_and_punctuation set as False, defaults to
`[' ', ',', '.', '?', '!', '(', ')']`
- 'test_same_as_train': defaults False, True makes this comparable to spl9
- 'suffix': returned column suffix appender, defaults to 'spl2'
- 'consolidate_nonoverlaps': defaults to False, True makes this comparable to spl5
- driftreport postmunge metrics: overlap_dict / spl2_newcolumns / spl2_overlap_dict / spl2_test_overlap_dict /
minsplit
- returned datatype: str (other categoric encodings can be returned downstream to return numeric)
- inversion available: yes with partial recovery
* spl5/ors5: similar to spl2, but those entries without identified string overlap are set to 0,
(used in ors5 in conjunction with ord3)
- useful for: final tier of spl2 aggregations such as in or19
- default infill: none
- default NArowtype: justNaN
- suffix appender: '_spl5' in base configuration or based on the family tree category
- assignparam parameters accepted:
- comparable to spl2, consolidate_nonoverlaps as True
- driftreport postmunge metrics: overlap_dict / spl2_newcolumns / spl2_overlap_dict / spl2_test_overlap_dict /
spl5_zero_dict / minsplit
- returned datatype: str (other categoric encodings can be returned downstream to return numeric)
- inversion available: yes with partial recovery
* spl6: similar to spl5, but with a splt performed downstream for identification of overlaps
within the overlaps
- useful for: just a variation on parsing aggregations
- default infill: none
- default NArowtype: justNaN
- suffix appender: '_spl6' in base configuration or based on the family tree category
- assignparam parameters accepted:
- comparable to spl2
- driftreport postmunge metrics: overlap_dict / spl2_newcolumns / spl2_overlap_dict / spl2_test_overlap_dict /
spl5_zero_dict / minsplit
- returned datatype: int8
- inversion available: yes with partial recovery
* spl7: similar to spl5, but recognizes string character overlaps down to minimum 2 instead of 5
- useful for: just a variation on parsing aggregations
- default infill: none
- default NArowtype: justNaN
- suffix appender: '_spl7' in base configuration or based on the family tree category
- assignparam parameters accepted:
- comparable to spl5, minsplit defaults to 2
- driftreport postmunge metrics: overlap_dict / srch_newcolumns_srch / search
- returned datatype: int8
- inversion available: yes with partial recovery
* srch: searches categorical sets for overlaps with user passed search string and returns new boolean column
for identified overlap entries.
- useful for: identifying specific entry character subsets by search
- default infill: none
- default NArowtype: justNaN
- suffix appender: '\_srch\_##*##' where ##*## is target identified search string
- assignparam parameters accepted:
- 'search': a list of strings, defaults as empty set
(note search parameter list can included embedded lists of terms for
aggregated activations of terms in the sub-list)
- 'case': bool to indicate case sensitivity of search, defaults True
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: overlap_dict / splt_newcolumns_splt / minsplit
- returned datatype: int8
- inversion available: yes with partial recovery
* src2: comparable to srch but expected to be more efficient when target set has narrow range of entries
- useful for: similar to srch slight variation on implementation
- default infill: none
- default NArowtype: justNaN
- suffix appender: '\_src2_##*##' where ##*## is target identified search string
- assignparam parameters accepted:
- 'search': a list of strings, defaults as empty set
(note search parameter list can included embedded lists of terms for
aggregated activations of terms in the sub-list)
- 'case': bool to indicate case sensitivity of search, defaults True
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: overlap_dict / splt_newcolumns_splt / minsplit
- returned datatype: int8
- inversion available: yes with partial recovery
* src3: comparable to src2 with additional support for test set entries not found in train set
* src4: searches categorical sets for overlaps with user passed search string and returns ordinal column
for identified overlap entries. (Note for multiple activations encoding priority given to end of list entries).
- useful for: ordinal version of srch
- default infill: none
- default NArowtype: justNaN
- suffix appender: '\_src4' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'search': a list of strings, defaults as empty set
(note search parameter list can included embedded lists of terms for
aggregated activations of terms in the sub-list)
- 'case': bool to indicate case sensitivity of search, defaults True
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: overlap_dict / splt_newcolumns_splt / minsplit
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with partial recovery
* nmrc/nmr2/nmr3: parses strings and returns any number groupings, prioritized by longest length
- useful for: extracting numeric character subsets of entries
- default infill: mean
- default NArowtype: parsenumeric
- suffix appender: '_nmrc' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: overlap_dict / mean / maximum / minimum
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* nmcm/nmc2/nmc3: similar to nmrc, but recognizes numbers with commas, returns numbers stripped of commas
- useful for: extracting numeric character subsets of entries, recognizes commas
- default infill: mean
- default NArowtype: parsenumeric
- suffix appender: '_nmcm' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: overlap_dict / mean / maximum / minimum
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* nmEU/nmE2/nmE3: similar to nmcm, but recognizes numbers with period or space thousands delimiter and comma decimal
- useful for: extracting numeric character subsets of entries, recognizes EU format
- default infill: mean
- default NArowtype: parsenumeric
- suffix appender: '_nmEU' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: overlap_dict / mean / maximum / minimum
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* strn: parses strings and returns any non-number groupings, prioritized by longest length, followed by ord3 ordinal encoding
- useful for: extracting nonnumeric character subsets of entries
- default infill: naninfill
- default NArowtype: justNaN
- suffix appender: '_strn_ord3'
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: overlap_dict
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: pending
### More Efficient Parsed Categoric Encodings
* new processing functions nmr4/nmr5/nmr6/nmc4/nmc5/nmc6/nmE4/nmE5/nmE6/spl8/spl9/sp10 (spelled sp"ten")/sp16/src2/sbs2/sp20/sbs4:
- comparable to functions nmrc/nmr2/nmr3/nmcm/nmc2/nmc3/nmEU/nmE2/nmE3/splt/spl2/spl5/sp15/srch/sbst/sp19/sbs3
- but make use of new assumption that set of unique values in test set is same or a subset of those values
from the train set, which allows for a more efficient application (no more string parsing of test sets)
- default infill: comparable
- default NArowtype: comparable
- suffix appender: same format, updated per the new category
- assignparam parameters accepted: comparable
- driftreport postmunge metrics: comparable
- returned datatype: comparable
- inversion available: yes
* new processing functions nmr7/nmr8/nmr9/nmc7/nmc8/nmc9/nmE7/nmE8/nmE9:
- comparable to functions nmrc/nmr2/nmr3/nmcm/nmc2/nmc3/nmEU/nmE2/nmE3
- but implements string parsing only for unique test set entries not found in train set
- for more efficient test set processing in automunge and postmunge
- (less efficient than nmr4/nmc4 etc but captures outlier points as may not be unusual in continuous distributions)
- default infill: comparable
- default NArowtype: comparable
- suffix appender: same format, updated per the new category
- assignparam parameters accepted: comparable
- driftreport postmunge metrics: overlap_dict / mean / maximum / minimum / unique_list / maxlength
- returned datatype: comparable
- inversion available: no
### Multi-tier Parsed Categoric Encodings
The following are a few variations of parsed categoric encoding aggregations. We recommend the or19 variant and
have written about in paper [Parsed Categoric Encodings with Automunge](https://medium.com/automunge/string-theory-acbd208eb8ca).
* new processing root categories or11 / or12 / or13 / or14 / or15 / or16 / or17 / or18 / or19 / or20
- or11 / or13 intended for categorical sets that may include multiple tiers of overlaps
and include base binary encoding via 1010 supplemented by tiers of string parsing for
overlaps using spl2 and spl5, or11 has two tiers of overlap string parsing, or13 has three,
each parsing returned with an ordinal encoding sorted by frequency (ord3)
- or12 / or14 are comparable to or11 / or13 but include an additional supplemental
transform of string parsing for numerical entries with nmrc followed by a z-score normalization
of returned numbers via nmbr
- or15 / or16 / or17 / or18 comparable to or11 / or12 / or13 / or14 but incorporate an
UPCS transform upstream and make use of spl9/sp10 instead of spl2/spl5 for assumption that
set of unique values in test set is same or subset of train set for more efficient postmunge
- or19 / or20 comparable to or16 / or18 but replace the 'nmrc' string parsing for numeric entries
with nmc8 which allows comma characters in numbers and makes use of consistent assumption to
spl9/sp10 that set of unique values in test set is same or subset of train for efficient postmunge
- or21 / or22 comparable to or19 / or20 but use spl2/spl5 instead of spl9/sp10,
which allows string parsing to handle test set entries not found in the train set
- or23 similar to or19 but instead of spl2/spl5 chain applies a sp19 for binary encoded string parsing with concurrent activations
- assignparam parameters accepted: 'minsplit': indicating lowest character length for recognized overlaps
(note that parameter has to be assigned to specific categories such as spl2/spl5 etc), also other parameters
associated with constituent functions
- driftreport postmunge metrics: comparable to constituent functions
- inversion available: yes with full recovery
___
### List of Root Categories
Here are those root categories presented again in a concise sorted list, intended as reference so user can
avoid unintentional duplication.
- '1010',
- '101d',
- '10mz',
- 'DB10',
- 'DB1s',
- 'DBb2',
- 'DBbn',
- 'DBbx',
- 'DBh1',
- 'DBh2',
- 'DBhs',
- 'DBm2',
- 'DBmc',
- 'DBmm',
- 'DBmp',
- 'DBn2',
- 'DBn3',
- 'DBn4',
- 'DBnb',
- 'DBne',
- 'DBnm',
- 'DBns',
- 'DBo4',
- 'DBo5',
- 'DBo6',
- 'DBo7',
- 'DBo8',
- 'DBod',
- 'DBoh',
- 'DBqt',
- 'DBrt',
- 'DBse',
- 'DBsk',
- 'DLmm',
- 'DLnb',
- 'DLrt',
- 'DP10',
- 'DP1s',
- 'DPb2',
- 'DPbn',
- 'DPbx',
- 'DPh1',
- 'DPh2',
- 'DPhs',
- 'DPm2',
- 'DPmc',
- 'DPmm',
- 'DPmp',
- 'DPn2',
- 'DPn3',
- 'DPn4',
- 'DPnb',
- 'DPne',
- 'DPnm',
- 'DPns',
- 'DPo4',
- 'DPo5',
- 'DPo6',
- 'DPo7',
- 'DPo8',
- 'DPod',
- 'DPoh',
- 'DPpc',
- 'DPqt',
- 'DPrt',
- 'DPse',
- 'DPsk',
- 'DT10',
- 'DT1s',
- 'DTb2',
- 'DTbn',
- 'DTbx',
- 'DTh1',
- 'DTh2',
- 'DThs',
- 'DTm2',
- 'DTmc',
- 'DTmm',
- 'DTmp',
- 'DTn2',
- 'DTn3',
- 'DTn4',
- 'DTnb',
- 'DTne',
- 'DTnm',
- 'DTns',
- 'DTo4',
- 'DTo5',
- 'DTo6',
- 'DTo7',
- 'DTo8',
- 'DTod',
- 'DToh',
- 'DTqt',
- 'DTrt',
- 'DTse',
- 'DTsk',
- 'GPS1',
- 'GPS2',
- 'GPS3',
- 'GPS4',
- 'GPS5',
- 'GPS6',
- 'MAD2',
- 'MAD3',
- 'MADn',
- 'NAr2',
- 'NAr3',
- 'NAr4',
- 'NAr5',
- 'NArw',
- 'U101',
- 'Ucct',
- 'Uh10',
- 'Uhs2',
- 'Uhsh',
- 'UPCS',
- 'Unht',
- 'Uor2',
- 'Uor3',
- 'Uor6',
- 'Uord',
- 'Utx2',
- 'Utx3',
- 'Utxt',
- 'absl',
- 'addd',
- 'aggt',
- 'arcs',
- 'arsn',
- 'artn',
- 'bins',
- 'bkb3',
- 'bkb4',
- 'bkt1',
- 'bkt2',
- 'bkt3',
- 'bkt4',
- 'bn7b',
- 'bn7o',
- 'bn9b',
- 'bn9o',
- 'bnKo',
- 'bnMo',
- 'bne7',
- 'bne9',
- 'bneb',
- 'bneo',
- 'bnep',
- 'bnKb',
- 'bnMb',
- 'bnr2',
- 'bnrd',
- 'bnry',
- 'bnso',
- 'bnst',
- 'bnwb',
- 'bnwK',
- 'bnwM',
- 'bnwd',
- 'bnwo',
- 'bsbn',
- 'bshr',
- 'bsor',
- 'bxc2',
- 'bxc3',
- 'bxc4',
- 'bxc5',
- 'bxc6',
- 'bxc7',
- 'bxcx',
- 'cnsl',
- 'cns2',
- 'cns3',
- 'copy',
- 'cost',
- 'd2d2',
- 'd2dt',
- 'd3d2',
- 'd3dt',
- 'd4d2',
- 'd4dt',
- 'd5d2',
- 'd5dt',
- 'd6d2',
- 'd6dt',
- 'dat2',
- 'dat3',
- 'dat4',
- 'dat5',
- 'dat6',
- 'datd',
- 'date',
- 'day2',
- 'day3',
- 'day4',
- 'day5',
- 'days',
- 'ddd2',
- 'ddd3',
- 'ddd4',
- 'ddd5',
- 'ddd6',
- 'dddt',
- 'ded2',
- 'ded3',
- 'ded4',
- 'ded5',
- 'ded6',
- 'dedt',
- 'dhmc',
- 'dhms',
- 'divd',
- 'dxd2',
- 'dxdt',
- 'dycs',
- 'dysn',
- 'exc2',
- 'exc3',
- 'exc4',
- 'exc5',
- 'exc6',
- 'exc7',
- 'exc8',
- 'exc9',
- 'excl',
- 'fsmh',
- 'hash',
- 'hldy',
- 'hmsc',
- 'hmss',
- 'hour',
- 'hrcs',
- 'hrs2',
- 'hrs3',
- 'hrs4',
- 'hrsn',
- 'hs10',
- 'hsh2',
- 'lb10',
- 'lbbn',
- 'lbda',
- 'lbfs',
- 'lbnm',
- 'lbo5',
- 'lbor',
- 'lbos',
- 'lbsm',
- 'lbte',
- 'lgn2',
- 'lgnm',
- 'lgnr',
- 'lngt',
- 'lngm',
- 'lnlg',
- 'log0',
- 'log1',
- 'logn',
- 'ma10',
- 'matx',
- 'maxb',
- 'mdcs',
- 'mdsn',
- 'mea2',
- 'mea3',
- 'mean',
- 'mics',
- 'min2',
- 'min3',
- 'min4',
- 'mint',
- 'misn',
- 'mlhs',
- 'mltG',
- 'mlti',
- 'mlto',
- 'mltp',
- 'mmd2',
- 'mmd3',
- 'mmd4',
- 'mmd5',
- 'mmd6',
- 'mmdx',
- 'mmor',
- 'mmq2',
- 'mmqb',
- 'mncs',
- 'mnm2',
- 'mnm3',
- 'mnm4',
- 'mnm5',
- 'mnm6',
- 'mnm7',
- 'mnmx',
- 'mnsn',
- 'mnt2',
- 'mnt3',
- 'mnt4',
- 'mnt5',
- 'mnt6',
- 'mnth',
- 'mnto',
- 'mnts',
- 'mscs',
- 'mssn',
- 'mxab',
- 'nbr2',
- 'nbr3',
- 'nbr4',
- 'nmbd',
- 'nmbr',
- 'nmc2',
- 'nmc3',
- 'nmc4',
- 'nmc5',
- 'nmc6',
- 'nmc7',
- 'nmc8',
- 'nmc9',
- 'nmcm',
- 'nmd2',
- 'nmd3',
- 'nmd4',
- 'nmd5',
- 'nmd6',
- 'nmdx',
- 'nmE2',
- 'nmE3',
- 'nmE4',
- 'nmE5',
- 'nmE6',
- 'nmE7',
- 'nmE8',
- 'nmE9',
- 'nmEU',
- 'nmq2',
- 'nmqb',
- 'nmr2',
- 'nmr3',
- 'nmr4',
- 'nmr5',
- 'nmr6',
- 'nmr7',
- 'nmr8',
- 'nmr9',
- 'nmrc',
- 'ntg2',
- 'ntg3',
- 'ntgr',
- 'nuld',
- 'null',
- 'om10',
- 'onht',
- 'or10',
- 'or11',
- 'or12',
- 'or13',
- 'or14',
- 'or15',
- 'or16',
- 'or17',
- 'or18',
- 'or19',
- 'or20',
- 'or21',
- 'or22',
- 'or23',
- 'or3b',
- 'or3c',
- 'or3d',
- 'ord2',
- 'ord3',
- 'ord4',
- 'ord5',
- 'ordd',
- 'ordl',
- 'ors2',
- 'ors5',
- 'ors6',
- 'ors7',
- 'por2',
- 'por3',
- 'pwbn',
- 'pwor',
- 'pwr2',
- 'pwrs',
- 'qbt1',
- 'qbt2',
- 'qbt3',
- 'qbt4',
- 'qbt5',
- 'qtt1',
- 'qttf',
- 'qtt2',
- 'rais',
- 'retn',
- 'rtb2',
- 'rtbn',
- 'sbs2',
- 'sbs3',
- 'sbs4',
- 'sbst',
- 'sbtr',
- 'sccs',
- 'scn2',
- 'scnd',
- 'scsn',
- 'sgn1',
- 'sgn2',
- 'sgn3',
- 'sgn4',
- 'shf2',
- 'shf3',
- 'shf4',
- 'shf5',
- 'shf6',
- 'shf7',
- 'shf8',
- 'shfl',
- 'shft',
- 'sint',
- 'smth',
- 'sp10',
- 'sp11',
- 'sp12',
- 'sp13',
- 'sp14',
- 'sp15',
- 'sp16',
- 'sp17',
- 'sp18',
- 'sp19',
- 'sp20',
- 'spl2',
- 'spl5',
- 'spl6',
- 'spl7',
- 'spl8',
- 'spl9',
- 'splt',
- 'sqrt',
- 'src2',
- 'src3',
- 'src4',
- 'srch',
- 'strn',
- 'strg',
- 'tant',
- 'texd',
- 'text',
- 'tlbn',
- 'tmzn',
- 'txt2',
- 'txt3',
- 'ucct',
- 'wkdo',
- 'wkds',
- 'wkdy',
- 'yea2',
- 'year'
___
### List of Suffix Appenders
The convention is that each transform returns a derived column or set of columns which are distinguished
from the source column by suffix appenders to the header strings. Note that in cases of root categories
whose family trees include multiple generations, there may be multiple inclusions of different suffix
appenders in a single returned column. A list of included suffix appenders would be too long to include here
since every transformation category serves as a distinct suffix appender. Note that
the transformation functions test for suffix overlap error from creating new column with headers already
present in dataframe and return results in final printouts and postprocess_dict['miscparameters_results']['suffixoverlap_results'].
(Or for comparable validation results for PCA, Binary, and excl transforms see 'PCA_suffixoverlap_results',
'Binary_suffixoverlap_results', 'excl_suffixoverlap_results'.)
___
### Other Reserved Strings
Note that as Automunge applies transformations, new column headers are derived with addition of suffix appenders with leading underscore. There is an edge case where a new column header may be derived matching one already found in the set, which would be a channel for error. All new header configurations are validated for this overlap channel and if found, reported in final printouts and aggregated in the validation result postprocess_dict['miscparameters_results']['suffixoverlap_aggregated_result']. To eliminate risk of column header overlap edge cases, one can pass column headers in df_train that omit the underscore character '\_' or otherwise inspect this validation result upon automunge(.) completion.
- 'Binary__1010_#' / 'Binary__ord3': The columns returned from Binary transform have headers per one of these conventions. Note that if this header is already present in the data, it will instead populate as 'Binary_############_1010_#' / 'Binary_############_ord3' which includes the 12 digit random integer associated with the application number and this adjustment will be reported with validation results.
- 'PCA__#': The columns returned from PCA dimensionality reduction have headers per this convention. Note that if this header is already present in the data, it will instead populate as 'PCA_############_#' which includes the 12 digit random integer associated with the application number and this adjustment will be reported with validation results.
- 'Automunge_index': a reserved column header for index columns returned in ID sets. When automunge(.) is run the returned ID sets are
populated with an index matching order of rows from original returned set, note that if this header is already present in the ID sets
it will instead populate as 'Automunge_index_' + a 12 digit random integer associated with the application number and will be reported with validation results.
Note that results of various validation checks such as for column header overlaps and other potential bugs are returned from
automunge(.) in closing printouts and in the postprocess_dict as postprocess_dict['miscparameters_results'], and returned
from postmunge(.) in the postreports_dict as postreports_dict['pm_miscparameters_results']. (If the function fails to compile
check the printouts.) It is not a requirement, but we also recommend omitting underscore characters in strings used for
transformation category identifiers for interpretation purposes.
___
### Root Category Family Tree Definitions
The family tree definitions reference documentation are now recorded in a separate file in the github repo titled "FamilyTrees.md".
___
## Custom Transformation Functions
Ok another item on the agenda, we're going to demonstrate methods to create custom
transformation functions, such that a user may customize the feature engineering
while building on all of the extremely useful built in features of automunge such
as infill methods including ML infill, feature importance, dimensionality reduction,
preparation for class imbalance oversampling, and perhaps most importantly the
simplest possible way for consistent processing of additional data with just a single
function call. The transformation functions will need to be channeled through pandas
and incorporate a handful of simple data structures, which we'll demonstrate below.
To give a simple example, we'll demonstrate defining a custom transformation for
z-score normalization, with an added parameter of a user configurable multiplier to
demonstrate how we can access parameters passed through assignparam. We'll associate
the transform with a new category we'll call 'newt' which we'll define with entries
passed in the transformdict and processdict data structures.
Let's create a really simple family tree for the new root category 'newt' which
simply creates a column identifying any rows subject to infill (NArw), performs
the z-score normalization we'll define below, and separately aggregates a collection
of standard deviation bins with the 'bins' transform.
```
transformdict = {'newt' : {'parents' : [],
'siblings' : [],
'auntsuncles' : ['newt', 'bins'],
'cousins' : ['NArw'],
'children' : [],
'niecesnephews' : [],
'coworkers' : [],
'friends' : []}}
```
Note that since this newt requires passing normalization parameters derived
from the train set to process the test set, we'll need to create two separate
transformation functions, the first a "custom_train" function that processes
the train set and records normalization parameters, and the second
a "custom_test" that only processes the test set on its own using the parameters
derived during custom_train. (Note that if we don't need properties from the
train set to process the test set we would only need to define a custom_train.)
So what's being demonstrated here is that we're populating a processdict entry
which will pass the custom transformation functions that we'll define below
to associate them with the category for use when that category is entered in one
of the family tree primitives associated with a root category. Note that the entries
for custom_test and custom_inversion are both optional, and info_retention is associated
with the inversion.
```
processdict = {'newt' : {'custom_train' : custom_train_template,
'custom_test' : custom_test_template,
'custom_inversion' : custom_inversion_template,
'info_retention' : True,
'NArowtype' : 'numeric',
'MLinfilltype' : 'numeric'}}
```
Note that for the processdict entry key, shown here as 'newt', the convention in library
is that this key serves as the default suffix appender for columns returned from
the transform unless otherwise specified in assignparam.
Note that for transforms in the custom_train convention, an initial infill is automatically
applied as adjacent cell infill to serve as precursor to ML infill. A user may also specify
by a 'defaultinfill' processdict entry other conventions for this initial infill associated
with the transformation category, as one of {'adjinfill', 'meaninfill', 'medianinfill',
'modeinfill', 'interpinfill', 'lcinfill', 'zeroinfill', 'oneinfill', 'naninfill', 'negzeroinfill'}. naninfill may be suitable
when a custom infill is applied as part of the custom transform. If naninfill retention is
desired for the returned data, either it may be assigned in assigninfill, or the 'NArowtype'
processdict entry can be cast as 'exclude', noting that the latter may interfere with ML infill
unless the feature is excluded from ML infill bases through ML_cmnd['full_exclude'].
Note that for transforms in the custom_train convention, after the transformation function
is applied, a data type casting is performed based on the MLinfilltype
unless deactivated with a dtype_convert processdict entry.
Now we have to define the custom processing functions which we are passing through
the processdict to automunge.
Here we'll define a "custom_train" function intended to process a train set and
derive any properties need to process test data, which will be returned in a dictionary
we'll refer to as the normalization_dict. Note that the normalization_dict can also
be used to store any drift statistics we want to collect for a postmunge driftreport.
The test data can then be prepared with the custom_test we'll demonstrate next
(unless custom_test is omitted in the processdict in which case test data
will be prepared with the same custom_train function).
Now we'll define the function. (Note that if defining for the internal library
an additional self parameter required as first argument.) Note that pandas is available
as pd and numpy as np.
```
def custom_train_template(df, column, normalization_dict):
"""
#Template for a custom_train transformation function to be applied to a train feature set.
#Where if a custom_test entry is not defined then custom_train will be applied to any
#corresponding test feature sets as well (as may be ok when processing the feature in df_test
#doesn't require accessing any train data properties from the normalization_dict).
#Receives a df as a pandas dataframe
#Where df will generally be from df_train (or may also be from df_test when custom_test not specified)
#column is the target column of transform
#which will already have the suffix appender incorporated when this is applied
#normalization_dict is a dictionary pre-populated with any parameters passed in assignparam
#(and also parameters designated in any defaultparams for the associated processdict entry)
#returns the resulting transformed dataframe as df
#returns normalization_dict, which is a dictionary for storing properties derived from train data
#that may then be accessed to consistently transform test data
#note that any desired drift statistics can also be stored in normalization_dict
#e.g. normalization_dict.update({'property' : property})
#(automunge(.) may externally consider normalization_dict keys of 'inplace' or 'newcolumns_list')
#note that prior to this function call
#a datatype casting based on the NArowtype processdict entry may have been performed
#as well as a default infill of adjinfill
#unless infill type otherwise specified in a defaultinfill processdict entry
#note that this default infill is a precursor to ML infill
#note that if this same custom_train is to be applied to both train and test data
#(when custom_test not defined) then the quantity, headers, and order of returned columns
#will need to be consistent independent of data properties
#Note that the assumptions for data type of received data
#Should align with the NArowtype specified in processdict
#Note that the data types and quantity of returned columns
#Will need to align with the MLinfilltype specified in processdict
#note that following this function call a dtype conversion will take place based on MLinfilltype
#unless deactivated with a dtype_convert processdict entry
"""
#As an example, here is the application of z-score normalization
#derived based on the training set mean and standard deviation
#which can accept any kind of numeric data
#so corresponding NArowtype processdict entry can be 'numeric'
#and returns a single column of continuous numeric data
#so corresponding MLinfilltype processdict entry will need to be 'numeric'
#where we'll include the option for a parameter 'multiplier'
#which is an arbitrary example to demonstrate accessing parameters
#basically we check if that parameter had been passed in assignparam or defaultparams
if 'multiplier' in normalization_dict:
multiplier = normalization_dict['multiplier']
#or otherwise assign and save a default value
else:
multiplier = 1
normalization_dict.update({'multiplier' : multiplier})
#Now we measure any properties of the train data used for the transformation
mean = df[column].mean()
stdev = df[column].std()
#It's good practice to ensure numbers used in derivation haven't been derived as nan
#or would result in dividing by zero
if mean != mean:
mean = 0
if stdev != stdev or stdev == 0:
stdev = 1
#In general if that same basis will be needed to process test data we'll store in normalization_dict
normalization_dict.update({'mean' : mean,
'stdev': stdev})
#Optionally we can measure additional drift stats for a postmunge driftreport
#we will also save those in the normalization_dict
minimum = df[column].min()
maximum = df[column].max()
normalization_dict.update({'minimum' : minimum,
'maximum' : maximum})
#Now we can apply the transformation
#The generic formula for z-score normalization is (x - mean) / stdev
#here we incorporate an additional variable as the multiplier parameter (defaults to 1)
df[column] = (df[column] - mean) * multiplier / stdev
#A few clarifications on column management for reference:
#Note that it is ok to return multiple columns
#we recommend naming additional columns as a function of the received column header
#e.g. newcolumn = column + '_' + str(int)
#returned column headers should be strings
#when columns are conditionally created as a function of data properties
#will need to save headers for reference in custom_test
# e.g. normalization_dict.update('newcolumns_list' : [newcolumn]}
#Note that it is ok to delete the received column from dataframe as part of transform if desired
#If any other temporary columns were created as part of transform that aren't returned
#their column headers should be logged as a normalization_dict entry under 'tempcolumns'
# e.g. normalization_dict.update('tempcolumns' : [tempcolumn]}
#we recommend naming non-returned temporary columns with integer headers since other headers will be strings
return df, normalization_dict
```
And then since this is a method that passes values between the train
and test sets, we'll need to define a corresponding "custom_test" function
intended for use on test data.
```
def custom_test_template(df, column, normalization_dict):
"""
#This transform will be applied to a test data feature set
#on a basis of a corresponding custom_train entry
#Such as test data passed to either automunge(.) or postmunge(.)
#Using properties from the train set basis stored in the normalization_dict
#Note that when a custom_test entry is not defined,
#The custom_train entry will instead be applied to both train and test data
#Receives df as a pandas dataframe of test data
#and a string column header (column)
#which will correspond to the column (with suffix appender already included)
#that was passed to custom_train
#Also receives a normalization_dict dictionary
#Which will be the dictionary populated in and returned from custom_train
#note that prior to this function call
#a datatype casting based on the NArowtype processdict entry may have been performed
#as well as a default infill of adjinfill
#unless infill type otherwise specified in a defaultinfill processdict entry
#where convention is that the quantity, headers, and order of returned columns
#will need to match those returned from the corresponding custom_train
"""
#As an example, here is the corresponding z-score normalization
#derived based on the training set mean and standard deviation
#which was populated in a normalization_dict in the custom_train example given above
#Basically the workflow is we access any values needed from the normalization_dict
#apply the transform
#and return the transformed dataframe
#access the train set properties from normalization_dict
mean = normalization_dict['mean']
stdev = normalization_dict['stdev']
multiplier = normalization_dict['multiplier']
#then apply the transformation and return the dataframe
df[column] = (df[column] - mean) * multiplier / stdev
return df
```
And finally here is an example of the convention for inverseprocess functions,
such as may be passed to a processdict entry to support an inversion operation
on a custom transformation function (associated with postmunge(.) inversion parameter).
```
def custom_inversion_template(df, returnedcolumn_list, inputcolumn, normalization_dict):
"""
#User also has the option to define a custom inversion function
#Corresponding to custom_train and custom_test
#Where the function receives a dataframe df
#Containing a post-transform configuration of one or more columns whose headers are
#recorded in returnedcolumn_list
#And this function is for purposes of creating a new column with header inputcolumn
#Which inverts that transformation originally applied to produce those
#columns in returnedcolumn_list
#Here normalization_dict is the same as populated and returned from a corresponding custom_train
#as applied to the train set
#Returns the transformed dataframe df with the addition of a new column as df[inputcolumn]
#Note that the returned dataframe should retain the columns in returnedcolumn_list
#Whose retention will be managed elsewhere
"""
#As an example, here we'll be inverting the z-score normalization
#derived based on the training set mean and standard deviation
#which corresponds to the examples given above
#Basically the workflow is we access any values needed from the normalization_dict
#Initialize the new column inputcolumn
#And use values in the set from returnedcolumn_list to recover values for inputcolumn
#First let's access the values we'll need from the normalization_dict
mean = normalization_dict['mean']
stdev = normalization_dict['stdev']
multiplier = normalization_dict['multiplier']
#Now initialize the inputcolumn
df[inputcolumn] = 0
#So for the example of z-score normalization, we know returnedcolumn_list will only have one entry
#In some other cases transforms may have returned multiple columns
returnedcolumn = returnedcolumn_list[0]
#now we perform the inversion
df[inputcolumn] = (df[returnedcolumn] * stdev / multiplier) + mean
return df
```
Please note that if you included externally initialized functions in an automunge(.) call,
like for custom_train transformation functions, they will need
to be reinitialized by user prior to uploading an externally saved postprocess_dict with pickle
in a new notebook. (This was a design decision for security considerations.) Please note that
if you assign a multicolumn input feature set to a single root category with tree categories in
custom_train convention by assigncat {set} bracket specification e.g. assigncat = {'newt':[{'column1', 'column2'}]} then your custom_train transform will recieve those headers as a list through normalization_dict['messy_data_headers'].
Further details on custom transformations provided in the essay [Custom Transformations with Automunge](https://medium.com/automunge/custom-transformations-with-automunge-ae694c635a7e).
___
## Custom ML Infill Functions
Ok final item on the agenda, we're going to demonstrate methods to create custom
ML infill functions for model training and inference, such that a user may integrate their
own machine learning algorithms into the platform. We have tried to balance our options
for alternate learning libraries from the default random forest, but recognize that
sophisticate hyperparameter tuning is not our forte, so want to leave the option
open for users to integrate their own implementations, such as may be for example built on
top of XGBoost or other learning libraries.
We'll demonstrate here templates for defining training and inference functions for
classification and regression. These functions can be initialized externally and
applied for ML infill and feature importance. Please note that if you included externally
initialized functions in an automunge(.) call, like for customML inference functions
(but not customML training functions), they will need to be reinitialized by user prior to
uploading an externally saved postprocess_dict with pickle in a new notebook. These demonstrations
are shown with scikit Random Forest models for simplicity. Further details on Custom ML is
provided in the essay [Custom ML Infill with Automunge](https://medium.com/automunge/custom-ml-infill-with-automunge-5b31d7cfd4d2).
```
def customML_train_classifier(labels, features, columntype_report, commands, randomseed):
"""
#Template for integrating user defined ML classificaiton training into ML infill
#labels for classification are received as a single column pandas series with header of integer 1
#and entries of str(int) type (i.e. string representations of non-negative integers like '0', '1')
#if user prefers numeric labels, they can apply labels = labels.astype(int)
#features is received as a numerically encoded pandas dataframe
#with categoric entries as boolean integer or ordinal integer
#and may include binarized features
#headers are strings matching the returned convention with suffix appenders
#columntype_report is a dictionary reporting properties of the columns found in features
#a list of categoric features is available as columntype_report['all_categoric']
#a list of of numeric features is available as columntype_report['all_numeric']
#and columntype_report also contains more granular information such as feature set groupings and types
#consistent with the form returned in postprocess_dict['columntype_report']
#commands is received per user specification passed to automunge(.)
#in ML_cmnd['MLinfill_cmnd']['customML_Classifier']
#such as could be a dictionary populated as {'parameter' : value}
#and then could be passed to model training as **commands
#this is the same dictionary received for the corresponding predict function
#so if user intends to pass different commands to both operations they could structure as e.g.
#{'train' : {'parameter1' : value1}, 'predict' : {'parameter2' : value2}}
#and then pass to model training as **commands['train']
#randomseed is received as a randomly sampled integer
#the returned model is saved in postprocess_dict
#and accessed to impute missing data in automunge and again in postmunge
#as channeled through the corresponding customML_predict_classifier
#if model training not successful user can return model as False
#if the function returns a ValueError model will automatically populate as False
"""
model = RandomForestClassifier(**commands)
#labels are received as str(int), for this demonstration will convert to integer
labels = labels.astype(int)
model.fit(features, labels)
return model
def customML_train_regressor(labels, features, columntype_report, commands, randomseed):
"""
#Template for integrating user defined ML regression training into ML infill
#labels for regression are received as a single column pandas series with header of integer 0
#and entries of float type
#commands is received per user specification passed to automunge(.)
#in ML_cmnd['MLinfill_cmnd']['customML_Regressor']
#features, columntype_report, randomseed
#are comparable in form to those documented for the classification template
#the returned model is saved in postprocess_dict
#and accessed to impute missing data in automunge and again in postmunge
#as channeled through the corresponding customML_predict_regressor
#if model training not successful user can return model as False
#Note that if user only wishes to define a single function
#they can use the labels header convention (0/1) to distinguish between
#whether data is served for classification or regression
"""
model = RandomForestRegressor(**commands)
model.fit(features, labels)
return model
def customML_predict_classifier(features, model, commands):
"""
#Template for integrating user defined ML classification inference into ML infill
#features is comparable in form to those features received in the corresponding training operation
#model is the model returned from the corresponding training operation
#commands is the same as received in the corresponding training operation
#infill should be returned as single column numpy array, pandas dataframe, or series (column header is ignored)
#returned infill entry types should either be str(int) or int
"""
infill = model.predict(features)
return infill
def customML_predict_regressor(features, model, commands):
"""
#Template for integrating user defined ML regression inference into ML infill
#features is comparable in form to those features received in the corresponding training operation
#model is the model returned from the corresponding training operation
#commands is the same as received in the corresponding training operation
#infill should be returned as single column numpy array, pandas dataframe, or series (column header is ignored)
#returned infill entry types should be floats or integers
"""
infill = model.predict(features)
return infill
```
Having defined our custom functions, we can then pass them to an automunge(.) call through the ML_cmnd parameter.
We can activate their use by setting ML_cmnd['autoML_type'] = 'customML'. We can pass parameters to our functions
through ML_cmnd['autoML_type']['MLinfill_cmnd']. And we can pass our defined functions through
ML_cmnd['autoML_type']['customML'].
```
ML_cmnd = {'autoML_type' : 'customML',
'MLinfill_cmnd' : {'customML_Classifier':{'parameter1' : value1},
'customML_Regressor' :{'parameter2' : value2}},
'customML' : {'customML_Classifier_train' : customML_train_classifier,
'customML_Classifier_predict': customML_predict_classifier,
'customML_Regressor_train' : customML_train_regressor,
'customML_Regressor_predict' : customML_predict_regressor}}
```
Please note that for customML autoML_type, feature importance in postmunge is performed with the default random forest. (This was a design decision that benefits privacy of custom model training when sharing postprocess_dict with third party, this way only customML inference needs to be re-initialized when uploading postprocess_dict in a separate notebook.)
Note that the library has an internal suite of inference functions for different ML libraries
that can optionally be used in place of a user defined customML inference function. These can
be activated by passing a string to entries for 'customML_Classifier_predict' or 'customML_Regressor_predict'
as one of {'tensorflow', 'xgboost', 'catboost', 'flaml', 'randomforest'}. Use of the
internally defined inference functions allows a user to upload a postprocess_dict in a separate notebook
without needing to first reinitialize the customML inference functions. For example, to apply a
default inference function for the XGBoost library could apply:
```
ML_cmnd = {'autoML_type' : 'customML',
'MLinfill_cmnd' : {'customML_Classifier':{'parameter1' : value1},
'customML_Regressor' :{'parameter2' : value2}},
'customML' : {'customML_Classifier_train' : customML_train_classifier,
'customML_Classifier_predict': 'xgboost',
'customML_Regressor_train' : customML_train_regressor,
'customML_Regressor_predict' : 'xgboost'}}
```
And thus ML infill can run with any tabular learning library or algorithm. BYOML.
___
## Final Model Training
* Please note that Automunge with 8.13 introduced what is currently an experimental implementation for final model training and inference. For example, they are well suited for training a final model in conjunction with our optuna_XG1 hyperparameter tuner using the same ML_cmnd API to select tuning options. Note that this option can apply a different model architecture or tuning options than those used for ML infill.
- automodel(.) accepts a training set and postprocess_dict as returned from automunge(.) to automatically train a model which is saved in the postprocess_dict
- autoinference(.) accepts a test set prepared in automunge(.) or postmunge(.) and a postprocess_dict which has been populated by automodel and returns the results of inference.
- Note that when a model from automodel(.) is populated in a postprocess_dict, then when additional test data is prepared with that postprocess_dict in postmunge(.), if the test set does not include label features, then autoinference will automatically be called within postmunge(.) with the results of inference returned in the returned labels set we call test_labels.
Here is an example of an automodel pipeline using gradient boosting with optuna tuning to train the final model and then running inference in postmunge:
```
#prepare data for ML
train, train_ID, labels, \
val, val_ID, val_labels, \
test, test_ID, test_labels, \
postprocess_dict = \
am.automunge(df_train,
labels_column = labels_column)
#Set final model XGBoost tuning parameters for Optuna Bayesian tuning
ML_cmnd = {'autoML_type' : 'xgboost',
# 'xgboost_gpu_id' : 0,
'hyperparam_tuner' : 'optuna_XG1',
'optuna_n_iter' : 1000,
'optuna_timeout' : 3600,
'optuna_kfolds' : 5,
'optuna_fasttune' : True,
'optuna_early_stop': 150,
'optuna_max_depth_tuning_stepsize' : 1,
}
#train final model with automodel which will be saved in postprocess_dict
postprocess_dict = \
am.automodel(train, labels, postprocess_dict,
ML_cmnd = ML_cmnd, encrypt_key = False,
printstatus = True, randomseed = False)
#optional: download postprocess_dict with pickle
#can either run inference to raw data in postmunge
#or directly to encoded data with autoinference
#here we demonstrate running inference on validation data with autoinference
#followed by running inference on raw test data with postmunge
#run inference on encoded data with autoinference, here shown on validation data
val_predictions = \
am.autoinference(val, postprocess_dict, encrypt_key = False,
printstatus = True, randomseed = False)
#run inference on raw test data with postmunge
#note predictions will be returned as test_labels
test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict, df_test)
#optionally can invert the encoded predictions back to original form of labels
df_invert, recovered_list, inversion_info_dict = \
am.postmunge(postprocess_dict, test_labels, inversion='labels')
```
We consider the final model functions automodel(.) and autoinference(.) in Beta.
___
## Conclusion
And there you have it; you now have all you need to prepare data for
machine learning with the Automunge platform. Feedback is welcome.
...
As a citation, please note that the Automunge package makes use of
the Pandas, Scikit-learn, SciPy stats, and NumPy libraries. In addition
to the default of Scikit-learn's Random Forest predictive models,
Automunge also has options for ML infill using the CatBoost, FLAML,
or XGboost libraries, and includes a hyperparameter tuning option by
the Optuna library.
Wes McKinney. Data Structures for Statistical Computing in Python,
Proceedings of the 9th Python in Science Conference, 51-56 (2010)
[publisher
link](http://conference.scipy.org/proceedings/scipy2010/mckinney.html)
Fabian Pedregosa, Gaël Varoquaux, Alexandre Gramfort, Vincent Michel,
Bertrand Thirion, Olivier Grisel, Mathieu Blondel, Peter Prettenhofer,
Ron Weiss, Vincent Dubourg, Jake Vanderplas, Alexandre Passos, David
Cournapeau, Matthieu Brucher, Matthieu Perrot, Édouard Duchesnay.
Scikit-learn: Machine Learning in Python, Journal of Machine Learning
Research, 12, 2825-2830 (2011) [publisher
link](http://jmlr.org/papers/v12/pedregosa11a.html)
Pauli Virtanen, Ralf Gommers, Travis E. Oliphant, Matt Haberland, Tyler
Reddy, David Cournapeau, Evgeni Burovski, Pearu Peterson, Warren
Weckesser, Jonathan Bright, St ́efan J. van der Walt, Matthew Brett,
Joshua Wilson, K. Jarrod Millman, Nikolay Mayorov, Andrew R. J. Nelson,
Eric Jones, Robert Kern, Eric Larson, CJ Carey, Ilhan Polat, Yu Feng,
Eric W. Moore, Jake Vand erPlas, Denis Laxalde, Josef Perktold, Robert
Cim- rman, Ian Henriksen, E. A. Quintero, Charles R Harris, Anne M.
Archibald, Antˆonio H. Ribeiro, Fabian Pedregosa, Paul van Mulbregt, and
SciPy 1. 0 Contributors. SciPy 1.0: Fundamental Algorithms for Scientific
Computing in Python. Nature Methods, 17:261– 272, 2020.
doi: https://doi.org/10.1038/s41592-019-0686-2.
S. van der Walt, S. Colbert, and G. Varoquaux. The numpy array: A
structure for efficient numerical computation. Computing in Science
& Engineering, 13:22–30, 2011.
Anna Veronika Dorogush, Vasily Ershov, Andrey Gulin. CatBoost: gradient
boosting with categorical features support [arXiv:1810.11363](https://arxiv.org/abs/1810.11363)
Chi Wang, Qingyun Wu, Markus Weimer, Erkang Zhu. FLAML: A Fast and Lightweight AutoML Library
[arXiv:1911.04706](https://arxiv.org/abs/1911.04706)
Tianqi Chen, Carlos Guestrin. XGBoost: A Scalable Tree Boosting System
[arXiv:1603.02754](https://arxiv.org/abs/1603.02754)
Takuya Akiba, Shotaro Sano, Toshihiko Yanase, Takeru Ohta, Masanori Koyama. Optuna: A Next-generation Hyperparameter Optimization Framework. Proceedings of the 25th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (2019). [arXiv:1907.10902](https://arxiv.org/abs/1907.10902#)
...
Please note that this list of citations is not exhaustive, we have had several additional influences that are cited in the papers of the [Automunge Medium Publication](https://medium.com/automunge).
...
As a quick clarification on the various permutations of the term “Automunge” used in codebase:
Automunge - The name of the library which prepares data for machine learning. Note that Automunge Inc. is doing business as Automunge. Note that imports are conducted by “pip install Automunge”. Note that Automunge is also the name of a folder in the GitHub repository. "Automunge" is a registered trademark.
AutoMunge - name of a defined class in the Automunge library. Note that jupyter notebook initializations are recommended as
```
from Automunge import *
am = AutoMunge()
```
Note that AutoMunge is also used as the title of a GitHub repository published by the Automunge account where we have been sharing code.
Automunger - name of a file published in GitHub repository (as Automunger.py) which is saved in the folder titled Automunge
automunge(.) - name of a function defined in the AutoMunge class in the Automunge library which is the central interface for initial preparations of data.
postmunge(.) - name of a function defined in the AutoMunge class in the Automunge library which is the central interface for subsequent preparations of additional data on the same basis.
...
Please note that the pickle library has a security vulnerability when loading an object of unknown origin. We do not use pickle in our codebase but suggested use above for downloading a returned postprocess_dict because of its ability to serialize and download arbitrary python objects. If you intend to distribute a pickled postprocess_dict publicly, the [python docs](https://docs.python.org/3/library/pickle.html) suggest signing the data with [hmac](https://docs.python.org/3/library/hmac.html#module-hmac) to ensure that it has not been tampered with.
...
Please note that Automunge imports make use of the Pandas, Scikit-Learn, Numpy, and Scipy Stats libraries
which are released under a 3-Clause BSD license. We include options that may import the
Catboost or XGBoost libraries which are released under the Apache License 2.0, as well as options for the FLAML and Optuna libraries which are released under a MIT License.
...
Have fun munging!!
...
You can read more about the tool through the blog posts documenting the
development online at the [Automunge Medium Publication](https://medium.com/automunge)
or for more writing there is a related collection of essays titled [From
the Diaries of John Henry](https://turingsquared.com).
The Automunge website is helpfully located at
[automunge.com](https://automunge.com).
If you are looking for something to cite, our paper [Tabular Engineering with Automunge](https://datacentricai.org/papers/15_CameraReady_TabularEngineering_102621_Final.pdf) was accepted to the 2021 NeurIPS Data-Centric AI workshop.
...
This file is part of Automunge which is released under the BSD-3-Clause license.
See file LICENSE or go to https://github.com/Automunge/AutoMunge for full license details.
contact available via [automunge.com](https://automunge.com)
Copyright (C) 2018, 2019, 2020, 2021, 2022, 2023 - All Rights Reserved
Patent Pending
%package -n python3-Automunge
Summary: platform for preparing tabular data for machine learning
Provides: python-Automunge
BuildRequires: python3-devel
BuildRequires: python3-setuptools
BuildRequires: python3-pip
%description -n python3-Automunge
# Automunge

#
## Table of Contents
* [Introduction](https://github.com/Automunge/AutoMunge#introduction)
* [Install, Initialize, and Basics](https://github.com/Automunge/AutoMunge#install-initialize-and-basics)
___
* [automunge(.)](https://github.com/Automunge/AutoMunge#automunge-1)
* [automunge(.) returned sets](https://github.com/Automunge/AutoMunge#automunge-returned-sets)
* [automunge(.) passed parameters](https://github.com/Automunge/AutoMunge#automunge-passed-parameters)
___
* [postmunge(.)](https://github.com/Automunge/AutoMunge#postmunge)
* [postmunge(.) returned sets](https://github.com/Automunge/AutoMunge#postmunge-returned-sets)
* [postmunge(.) passed parameters](https://github.com/Automunge/AutoMunge#postmunge-passed-parameters)
___
* [Default Transformations](https://github.com/Automunge/AutoMunge#default-transformations)
* [Library of Transformations](https://github.com/Automunge/AutoMunge#library-of-transformations)
* [Custom Transformation Functions](https://github.com/Automunge/AutoMunge#custom-transformation-functions)
* [Custom ML Infill Functions](https://github.com/Automunge/AutoMunge#custom-ml-infill-functions)
* [Final Model Training](https://github.com/Automunge/AutoMunge#final-model-training)
___
* [Conclusion](https://github.com/Automunge/AutoMunge#conclusion)
___
## Introduction
[Automunge](https://automunge.com) is an open source python library that has formalized and automated the data preparations for tabular learning in between the workflow boundaries of received “tidy data” (one column per feature and one row per sample) and returned dataframes suitable for the direct application of machine learning. Under automation numeric features are normalized, categoric features are binarized, and missing data is imputed. Data transformations are fit to properties of a training set for a consistent basis on any partitioned “validation data” or additional “test data”. When preparing training data, a compact python dictionary is returned recording the steps and parameters of transformation, which then may serve as a key for preparing additional data on a consistent basis.
> In other words, put simply:<br/>
> - **automunge(.)** prepares tabular data for machine learning with encodings, missing data infill, and may channel stochastic perturbations into features<br/>
> - **postmunge(.)** consistently prepares additional data very efficiently<br/>
>
> We make machine learning easy.
In addition to data preparations under automation, Automunge may also serve as a platform for engineering data pipelines. An extensive internal library of univariate transformations includes options like numeric translations, bin aggregations, date-time encodings, noise injections, categoric encodings, and even “parsed categoric encodings” in which categoric strings are vectorized based on shared grammatical structure between entries. Feature transformations may be mixed and matched in sets that include generations and branches of derivations by use of our “family tree primitives”. Feature transformations fit to properties of a training set may be custom defined from a very simple template for incorporation into a pipeline. Dimensionality reductions may be applied, such as by principal component analysis, feature importance rankings, or categoric consolidations. Missing data receives “ML infill”, in which models are trained for a feature to impute missing entries based on properties of the surrounding features. Random sampling may be channeled into features as stochastic perturbations.
Be sure to check out our [Tutorial Notebooks](https://github.com/Automunge/AutoMunge/tree/master/Tutorials). If you are looking for something to cite, our paper [Tabular Engineering with Automunge](https://datacentricai.org/papers/15_CameraReady_TabularEngineering_102621_Final.pdf) was accepted to the Data-Centric AI workshop at NeurIPS 2021.
## Install, Initialize, and Basics
Automunge is now available for pip install:
```
pip install Automunge
```
Or to upgrade:
```
pip install Automunge --upgrade
```
Once installed, run this in a local session to initialize:
```
from Automunge import *
am = AutoMunge()
```
Where e.g. for train set processing with default parameters run:
```
train, train_ID, labels, \
val, val_ID, val_labels, \
test, test_ID, test_labels, \
postprocess_dict = \
am.automunge(df_train)
```
Importantly, if the df_train set passed to automunge(.) includes a column
intended for use as labels, it should be designated with the labels_column
parameter.
Or for subsequent consistent processing of train or test data, using the
dictionary returned from original application of automunge(.), run:
```
test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict, df_test)
```
I find it helpful to pass these functions with the full range of arguments
included for reference, thus a user may simply copy and past this form.
```
#for automunge(.) function on original train and test data
train, train_ID, labels, \
val, val_ID, val_labels, \
test, test_ID, test_labels, \
postprocess_dict = \
am.automunge(df_train, df_test = False,
labels_column = False, trainID_column = False, testID_column = False,
valpercent=0.0, floatprecision = 32, cat_type = False, shuffletrain = True, noise_augment = 0,
dupl_rows = False, TrainLabelFreqLevel = False, powertransform = False, binstransform = False,
MLinfill = True, infilliterate=1, randomseed = False, eval_ratio = .5,
numbercategoryheuristic = 255, pandasoutput = 'dataframe', NArw_marker = True,
featureselection = False, featurethreshold = 0., inplace = False, orig_headers = False,
Binary = False, PCAn_components = False, PCAexcl = [], excl_suffix = False,
ML_cmnd = {'autoML_type':'randomforest',
'MLinfill_cmnd':{'RandomForestClassifier':{}, 'RandomForestRegressor':{}},
'PCA_type':'default',
'PCA_cmnd':{}},
assigncat = {'1010':[], 'onht':[], 'ordl':[], 'bnry':[], 'hash':[], 'hsh2':[],
'DP10':[], 'DPoh':[], 'DPod':[], 'DPbn':[], 'DPhs':[], 'DPh2':[],
'nmbr':[], 'mnmx':[], 'retn':[], 'DPnb':[], 'DPmm':[], 'DPrt':[],
'bins':[], 'pwr2':[], 'bnep':[], 'bsor':[], 'por2':[], 'bneo':[],
'ntgr':[], 'srch':[], 'or19':[], 'tlbn':[], 'excl':[], 'exc2':[]},
assignparam = {'global_assignparam' : {'(parameter)': 42},
'default_assignparam' : {'(category)' : {'(parameter)' : 42}},
'(category)' : {'(column)' : {'(parameter)' : 42}}},
assigninfill = {'stdrdinfill':[], 'MLinfill':[], 'zeroinfill':[], 'oneinfill':[],
'adjinfill':[], 'meaninfill':[], 'medianinfill':[], 'negzeroinfill':[],
'interpinfill':[], 'modeinfill':[], 'lcinfill':[], 'naninfill':[]},
assignnan = {'categories':{}, 'columns':{}, 'global':[]},
transformdict = {}, processdict = {}, evalcat = False, ppd_append = False,
entropy_seeds = False, random_generator = False, sampling_dict = False,
privacy_encode = False, encrypt_key = False, printstatus = 'summary', logger = {})
```
Please remember to save the automunge(.) returned object postprocess_dict
such as using pickle library, which can then be later passed to the postmunge(.)
function to consistently prepare subsequently available data.
```
#Sample pickle code:
#sample code to download postprocess_dict dictionary returned from automunge(.)
import pickle
with open('filename.pickle', 'wb') as handle:
pickle.dump(postprocess_dict, handle, protocol=pickle.HIGHEST_PROTOCOL)
#to upload for later use in postmunge(.) in another notebook
import pickle
with open('filename.pickle', 'rb') as handle:
postprocess_dict = pickle.load(handle)
#Please note that if you included externally initialized functions in an automunge(.) call
#like for custom_train transformation functions or customML inference functions
#they will need to be reinitialized prior to uploading the postprocess_dict with pickle.
```
We can then apply the postprocess_dict saved from a prior application of automunge
for consistent processing of additional data.
```
#for postmunge(.) function on additional available train or test data
#using the postprocess_dict object returned from original automunge(.) application
test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict, df_test,
testID_column = False,
pandasoutput = 'dataframe', printstatus = 'summary',
dupl_rows = False, TrainLabelFreqLevel = False,
featureeval = False, traindata = False, noise_augment = 0,
driftreport = False, inversion = False,
returnedsets = True, shuffletrain = False,
entropy_seeds = False, random_generator = False, sampling_dict = False,
randomseed = False, encrypt_key = False, logger = {})
```
The functions accept pandas dataframe or numpy array input and return encoded dataframes
with consistent order of columns between train and test data.
(For input numpy arrays any label column should be positioned as final column in set.)
The functions return data with categoric features translated to numerical encodings
and normalized numeric such as to make them suitable for direct application to a
machine learning model in the framework of a user's choice, including sets for
the various activities of a generic machine learning project such as training (train),
validation (val), and inference (test). The automunge(.) function also returns a
python dictionary (the "postprocess_dict") that can be used as a key to prepare additional
data with postmunge(.).
When left to automation, automunge(.) evaluates properties of a feature to select
the type of encoding, for example whether a column is numeric, categoric, high cardinality,
binary, date time, etc. Alternately, a user can
assign specific processing functions to distinct columns (via assigncat parameter) -
which may be pulled from the internal [Library of Transformations](https://github.com/Automunge/AutoMunge#library-of-transformations) or alternately [custom
defined](https://github.com/Automunge/AutoMunge#custom-transformation-functions).
The feature engineering transformations are recorded with suffixes
appended to the column header title in the returned sets, for one example the
application of z-score normalization returns a column with header origname + '\_nmbr'.
As another example, for binary encoded sets the set of columns are returned with
header origname + '\_1010_#' where # is integer to distinguish columns in same set.
In most cases, the suffix appenders are derived from the transformation category
identifier (which is by convention a 4 letter string).
The default transforms applied under automation are detailed below in section
[Default Transforms](https://github.com/Automunge/AutoMunge#default-transformations).
Missing data receives ML infill (defaulting to random forest models) and missing marker aggregation.
Other features of the library are detailed in the [tutorial notebooks](https://github.com/Automunge/AutoMunge/tree/master/Tutorials)
and with their associated parameters below.
Other options available in the library include feature importance (via featureselection parameter),
oversampling (via the TrainLabelFreqLevel parameter), dimensionality reductions (via PCAn_components, Binary, or featurethreshold parameters), and stochastic perturbations (by the DP family of transformations detailed in the library of transformations and tutorials). Further detail provided with parameter writeups below.
Note that there is a potential source of error if the returned column header
title strings, which will include suffix appenders based on transformations applied,
match any of the original column header titles passed to automunge. This is an edge
case not expected to occur in common practice and will return error message at
conclusion of printouts and a logged validation result as postprocess_dict['miscparameters_results']['suffixoverlap_aggregated_result']. This channel can
be eliminated by omitting the underscore character in received column headers.
Please note that we consider the postmunge(.) latency a key performance
metric since it is the function that may be called under repetition in production.
The automunge(.) latency can be improved by manual assignment of root categories with the assigncat parameter
or by deactivating ML infill with the MLinfill parameter.
## automunge(.)
The application of the automunge and postmunge functions requires the
assignment of the function to a series of named sets. We suggest using
consistent naming convention as follows:
```
#first you'll need to initialize
from Automunge import *
am = AutoMunge()
#then to run with default parameters
train, train_ID, labels, \
val, val_ID, val_labels, \
test, test_ID, test_labels, \
postprocess_dict = \
am.automunge(df_train)
```
The full set of parameters available to be passed are given here, with
explanations provided below:
```
#first you'll need to initialize
from Automunge import *
am = AutoMunge()
#then if you want you can copy paste following to view all of parameter options
#where df_train is the target training data set to be prepared
train, train_ID, labels, \
val, val_ID, val_labels, \
test, test_ID, test_labels, \
postprocess_dict = \
am.automunge(df_train, df_test = False,
labels_column = False, trainID_column = False, testID_column = False,
valpercent=0.0, floatprecision = 32, cat_type = False, shuffletrain = True, noise_augment = 0,
dupl_rows = False, TrainLabelFreqLevel = False, powertransform = False, binstransform = False,
MLinfill = True, infilliterate=1, randomseed = False, eval_ratio = .5,
numbercategoryheuristic = 255, pandasoutput = 'dataframe', NArw_marker = True,
featureselection = False, featurethreshold = 0., inplace = False, orig_headers = False,
Binary = False, PCAn_components = False, PCAexcl = [], excl_suffix = False,
ML_cmnd = {'autoML_type':'randomforest',
'MLinfill_cmnd':{'RandomForestClassifier':{}, 'RandomForestRegressor':{}},
'PCA_type':'default',
'PCA_cmnd':{}},
assigncat = {'1010':[], 'onht':[], 'ordl':[], 'bnry':[], 'hash':[], 'hsh2':[],
'DP10':[], 'DPoh':[], 'DPod':[], 'DPbn':[], 'DPhs':[], 'DPh2':[],
'nmbr':[], 'mnmx':[], 'retn':[], 'DPnb':[], 'DPmm':[], 'DPrt':[],
'bins':[], 'pwr2':[], 'bnep':[], 'bsor':[], 'por2':[], 'bneo':[],
'ntgr':[], 'srch':[], 'or19':[], 'tlbn':[], 'excl':[], 'exc2':[]},
assignparam = {'global_assignparam' : {'(parameter)': 42},
'default_assignparam' : {'(category)' : {'(parameter)' : 42}},
'(category)' : {'(column)' : {'(parameter)' : 42}}},
assigninfill = {'stdrdinfill':[], 'MLinfill':[], 'zeroinfill':[], 'oneinfill':[],
'adjinfill':[], 'meaninfill':[], 'medianinfill':[],
'interpinfill':[], 'modeinfill':[], 'lcinfill':[], 'naninfill':[]},
assignnan = {'categories':{}, 'columns':{}, 'global':[]},
transformdict = {}, processdict = {}, evalcat = False, ppd_append = False,
entropy_seeds = False, random_generator = False, sampling_dict = False,
privacy_encode = False, encrypt_key = False, printstatus = 'summary', logger = {})
```
Or for the postmunge function:
```
#for postmunge(.) function on additional or subsequently available test (or train) data
#using the postprocess_dict object returned from original automunge(.) application
#first you'll need to initialize
from Automunge import *
am = AutoMunge()
#then to run with default parameters
test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict, df_test)
```
With the full set of arguments available to be passed as:
```
#first you'll need to initialize
from Automunge import *
am = AutoMunge()
#then if you want you can copy paste following to view all of parameter options
#here postprocess_dict was returned from corresponding automunge(.) call
#and df_test is the target data set to be prepared
test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict, df_test,
testID_column = False,
pandasoutput = 'dataframe', printstatus = 'summary', inplace = False,
dupl_rows = False, TrainLabelFreqLevel = False,
featureeval = False, traindata = False, noise_augment = 0,
driftreport = False, inversion = False,
returnedsets = True, shuffletrain = False,
entropy_seeds = False, random_generator = False, sampling_dict = False,
randomseed = False, encrypt_key = False, logger = {})
```
Note that the only required argument to the automunge function is the
train set dataframe, the other arguments all have default values if
nothing is passed. The postmunge function requires as minimum the
postprocess_dict object (a python dictionary returned from the application of
automunge) and a dataframe test set consistently formatted as those sets
that were originally applied to automunge.
...
Here now are descriptions for the returned sets from automunge, which
will be followed by descriptions of the parameters which can be passed to
the function, followed by similar treatment for postmunge returned sets
and arguments. Further below is documentation for the library of transformations.
...
## automunge(.) returned sets:
Automunge defaults to returning data sets as pandas dataframes, or for
single column sets as pandas series.
For dataframes, data types of returned columns are based on the transformation applied,
for example columns with boolean integers are cast as int8, ordinal encoded
columns are given a conditional type based on the size of encoding space as either
uint8, uint16, or uint32. Continuous sets are cast as float16, float32, or float64
based on the automunge(.) floatprecision parameter. And direct passthrough columns
via excl transform retain the received data type.
* train: a numerically encoded set of data intended to be used to train a
downstream machine learning model in the framework of a user's choice
* train_ID: the set of ID values corresponding to the train set if a ID
column(s) was passed to the function. This set may be useful if the shuffle
option was applied. Note that an ID column may serve multiple purposes such
as row identifiers or for pairing tabular data rows with a corresponding
image file for instance. Also included in this set is a derived column
titled 'Automunge_index', this column serves as an index identifier for order
of rows as they were received in passed data, such as may be beneficial
when data is shuffled. If the received df_train had a non-ranged integer index,
it is extracted and returned in this set. For more information please refer to writeup for the
trainID_column parameter.
* labels: a set of numerically encoded labels corresponding to the
train set if a label column was passed. Note that the function
assumes the label column is originally included in the train set. Note
that if the labels set is a single column a returned dataframe is flattened
to a pandas Series or a returned Numpy array is also
flattened (e.g. [[1,2,3]] converted to [1,2,3] ).
* val: a set of training data carved out from the train set
that is intended for use in hyperparameter tuning of a downstream model.
* val_ID: the set of ID values corresponding to the val
set. Comparable to columns returned in train_ID.
* val_labels: the set of labels corresponding to the val
set
* test: the set of features, consistently encoded and normalized as the
training data, that can be used to generate predictions from a
downstream model trained with train. Note that if no test data is
available during initial address this processing will take place in the
postmunge(.) function.
* test_ID: the set of ID values corresponding to the test set. Comparable
to columns returned in train_ID unless otherwise specified. For more
information please refer to writeup for the testID_column parameter.
* test_labels: a set of numerically encoded labels corresponding to the
test set if a label column was passed.
* postprocess_dict: a returned python dictionary that includes
normalization parameters and trained ML infill models used to
generate consistent processing of additional train or test data such as
may not have been available at initial application of automunge. It is
recommended that this dictionary be externally saved on each application
used to train a downstream model so that it may be passed to postmunge(.)
to consistently process subsequently available test data, such as
demonstrated with the pickle library above.
A few useful entries in the postprocess_dict include:
- postprocess_dict['finalcolumns_train']: list of returned column headers for train set including suffix appenders
- postprocess_dict['columntype_report']: a report classifying the returned column types, including lists of all categoric and all numeric returned columns
- postprocess_dict['column_map']: a report mapping the input columns to their associated returned columns (excluding those consolidated as part of a dimensionality reduction). May be useful to inspect sets returned for a specific feature e.g. train[postprocess_dict['column_map']['input_column_header']]
- postprocess_dict['FS_sorted]: sorted results of feature importance evaluation if elected
- postprocess_dict['miscparameters_results']: reporting results of validation tests performed on parameters and passed data
...
## automunge(.) passed parameters
```
train, train_ID, labels, \
val, val_ID, val_labels, \
test, test_ID, test_labels, \
postprocess_dict = \
am.automunge(df_train, df_test = False,
labels_column = False, trainID_column = False, testID_column = False,
valpercent=0.0, floatprecision = 32, cat_type = False, shuffletrain = True, noise_augment = 0,
dupl_rows = False, TrainLabelFreqLevel = False, powertransform = False, binstransform = False,
MLinfill = True, infilliterate=1, randomseed = False, eval_ratio = .5,
numbercategoryheuristic = 255, pandasoutput = 'dataframe', NArw_marker = True,
featureselection = False, featurethreshold = 0., inplace = False, orig_headers = False,
Binary = False, PCAn_components = False, PCAexcl = [], excl_suffix = False,
ML_cmnd = {'autoML_type':'randomforest',
'MLinfill_cmnd':{'RandomForestClassifier':{}, 'RandomForestRegressor':{}},
'PCA_type':'default',
'PCA_cmnd':{}},
assigncat = {'1010':[], 'onht':[], 'ordl':[], 'bnry':[], 'hash':[], 'hsh2':[],
'DP10':[], 'DPoh':[], 'DPod':[], 'DPbn':[], 'DPhs':[], 'DPh2':[],
'nmbr':[], 'mnmx':[], 'retn':[], 'DPnb':[], 'DPmm':[], 'DPrt':[],
'bins':[], 'pwr2':[], 'bnep':[], 'bsor':[], 'por2':[], 'bneo':[],
'ntgr':[], 'srch':[], 'or19':[], 'tlbn':[], 'excl':[], 'exc2':[]},
assignparam = {'global_assignparam' : {'(parameter)': 42},
'default_assignparam' : {'(category)' : {'(parameter)' : 42}},
'(category)' : {'(column)' : {'(parameter)' : 42}}},
assigninfill = {'stdrdinfill':[], 'MLinfill':[], 'zeroinfill':[], 'oneinfill':[],
'adjinfill':[], 'meaninfill':[], 'medianinfill':[], 'negzeroinfill':[],
'interpinfill':[], 'modeinfill':[], 'lcinfill':[], 'naninfill':[]},
assignnan = {'categories':{}, 'columns':{}, 'global':[]},
transformdict = {}, processdict = {}, evalcat = False, ppd_append = False,
entropy_seeds = False, random_generator = False, sampling_dict = False,
privacy_encode = False, encrypt_key = False, printstatus = 'summary', logger = {})
```
* df_train: a pandas dataframe or numpy array containing a structured
dataset intended for use to subsequently train a machine learning model.
The set at a minimum should be 'tidy' meaning a single column per feature
and a single row per observation, with all unique string column headers. If
desired the set may include one are more
"ID" columns (intended to be carved out and consistently shuffled or partitioned
such as an index column) and zero or one column intended to be used as labels
for a downstream training operation. The tool supports the inclusion of
non-index-range column as index or multicolumn index (requires named index
columns). Such index types are added to the returned "ID" sets which are
consistently shuffled and partitioned as the train and test sets. For passed
numpy array any label column should be the final column.
* df_test: a pandas dataframe or numpy array containing a structured
dataset intended for use to generate predictions from a downstream machine
learning model trained from the automunge returned sets. The set must be
consistently formatted as the train set with consistent column headers and
order of columns. (This set may optionally contain a labels column if one
was included in the train set although its inclusion is not required). If
desired the set may include one or more ID column(s) or column(s) intended
for use as labels. A user may pass False if this set is not available. The tool
supports the inclusion of non-index-range column as index or multicolumn index
(requires named index columns). Such index types are added to the returned
"ID" sets which are consistently shuffled and partitioned as the train and
test sets.
* labels_column: a string of the column title for the column from the
df_train set intended for use as labels in training a downstream machine
learning model. The function defaults to False for cases where the
train set does not include a label column. An integer column index may
also be passed such as if the source dataset was a numpy array. A user can
also pass True in which case the label set will be taken from the final
column of the train set (including cases of single column in train set).
A label column for df_train data is partitioned and returned in the labels set.
Note that a designated labels column will automatically be checked for in
corresponding df_test data and partitioned to the returned test_labels set when
included. Note that labels_column can also be passed as a list of multiple
label columns. Note that when labels_column is passed as a list, a first entry
set bracket specification comparable to as available for the Binary parameter
can be applied to designate that multiple categoric labels in the list may be consolidated to a
single categoric label, such as to train a single classification model for multiple classification targets,
which form may then be recovered in a postmunge inversion='labels' operation, such as to convert the
consolidated form after an inference operation back to the form of separate inferred labels.
When passing data as numpy arrays the label column needs to be the final column (on far right of dataframe).
* trainID_column: defaults to False, user can pass a column header or list of column headers
for columns that are to be segregated from the df_train set for return in the train_ID
set (consistently shuffled and partitioned when applicable). For example this may
be desired for an index column or any other column that the user wishes to exclude from
the ML infill basis. Defaults to False for cases where no ID columns are desired. Note
that when designating ID columns for df_train if that set of ID columns is present in df_test
they will automatically be given comparable treatment unless otherwise specified. An integer
column index or list of integer column indexes may also be passed such as if the source dataset
was a numpy array. Note that the returned ID sets (such as train_ID, val_ID, and test_ID) are automatically
populated with an additional column with header 'Automunge_index' which may serve as an
index column in cases of shuffling, validation partitioning, or oversampling. In cases of unnamed
non-range integer indexes, they are automatically extracted and returned in the ID sets as 'Orig_index'.
If a user would like to include a column both in the features for encoding and the ID sets for original form
retention, they can pass trainID_column as a list of two lists, e.g. [list1, list2], where the first
list may include ID columns to be struck from the features and the second list may include ID columns
to be retained in the features.
* testID_column: defaults to False, user can pass a column header or list of column headers
for columns that are to be segregated from the df_test set for return in the test_ID
set (consistently shuffled and partitioned when applicable). For example this may
be desired for an index column or any other column that the user wishes to exclude from
the ML infill basis. Defaults to False, which can be used for cases where the df_test
set does not contain any ID columns, or may also be passed as the default of False when
the df_test ID columns match those passed in the trainID_column parameter,
in which case they are automatically given comparable treatment. Thus, the primary intended use
of the testID_column parameter is for cases where a df_test has ID columns
different from those passed with df_train. Note that an integer column index
or list of integer column indexes may also be passed such as if the source dataset was a numpy array.
(When passing data as numpy arrays one should match ID partitioning between df_test and df_train.) In cases of unnamed
non-range integer indexes, they are automatically extracted and returned in the ID sets as 'Orig_index'.
If a user would like to include a column both in the features for encoding and the ID sets for original form
retention, they can pass testID_column as a list of two lists, e.g. [list1, list2], where the first
list may include ID columns to be struck from the features and the second list may include ID columns
to be retained in the features. (We recommend only using testID_column specification for cases where df_test
includes columns that aren't present in df_train, otehrwise it is automatic.)
* valpercent: a float value between 0 and 1 which designates the percent
of the training data which will be set aside for the validation
set (generally used for hyperparameter tuning of a downstream model).
This value defaults to 0 for no validation set returned. Note that when
shuffletrain parameter is activated (which is default for train sets) validation
sets will contain random rows. If shuffletrain parameter is set to False then any
validation set will be pulled from the bottom sequential rows of the df_train dataframe.
valpercent can also be passed as a two entry tuple in the form valpercent=(start, end),
where start is a float in the range 0<=start<1, end is a float in the range 0<end<=1, and start < end.
For example, if specified as valpercent=(0.2, 0.4), the returned training data would consist of the first 20% of rows and the last 60% of rows, while the validation set would consist of the remaining rows, and
where the train and validation sets may then be subsequently individually shuffled when activated by the shuffletrain parameter. The purpose of this valpercent tuple option is to support integration into a cross validation operation, for example for a cross validation with k=3, automunge(.) could be called three times with valpercent passed for each as (0,0.33), (0.33,0.66), (0.66,1) respectively. Please note that when using automunge(.) in a cross-validation operation, we recommend using the postprocess_dict['final_assigncat'] entry populated in the first automunge(.) call associated with the first train/validation split as the assigncat entry passed to the automunge(.) assigncat parameter in each subsequent automunge(.) call associated with the remaining train/validation splits, which will speed up the remaining calls by eliminating the automated evaluation of data properties as well as mitigate risk of (remote) edge case when category assignment to a column under automation may differ between different validation set partitions due to deviations in aggregate data properties associated with a column.
```
#example of preparing k folds in a cross validation:
k=3
for i in range(k):
print('processing fold #', i)
#valpercent accepts a tuple of float ratios to set boundaries of validation split
valpercent = (i/k, (i+1)/k)
if i == 0:
#can also populate any manual assignments here
assigncat = {}
elif i > 0:
#after first fold use the final assigncat from prior
#to turn off automated category assignments
#which will speed it up and eliminate an edge case
assigncat = postprocess_dict['final_assigncat']
train, train_ID, labels, \
val, val_ID, val_labels, \
test, test_ID, test_labels, \
postprocess_dict = \
am.automunge(df_train,
labels_column = labels_column,
valpercent = valpercent,
assigncat = assigncat)
#train and evaluate model with train/labels and val/val_labels
#note that in edge case number of columns may vary between folds
#which could arrise from e.g. 1010 binarization exposed to different range of entries in a feature
#if this becomes an obstacle can manually specify the range of activation targets in assignparam
#e.g. assignparam = {'1010' : {'<targetfeature>' : {'all_activations' : list_of_unique_values_for_targetfeature}}}
#or by just manually specifying ordinal encoding to categoric features in assigncat
#e.g. assigncat = {'ordl' : list_of_categoric_features}
#it is also possible to process folds for i>0 with train and validation data prepared seperately in postmunge
#this would run faster e.g. by eliminating redundant ML infill model training
#and ensure that each fold has same number of columns
#albeit with tradeoff of not strictly adhering to segregation of train/validation basis
#for avoidance of data leakage
```
* floatprecision: an integer with acceptable values of _16/32/64_ designating
the memory precision for returned float values. (A tradeoff between memory
usage and floating point precision, smaller for smaller footprint.)
This currently defaults to 32 for 32-bit precision of float values. Note
that there may be energy efficiency benefits at scale to basing this to 16.
Note that integer data types are still retained with this option.
* cat_type: accepts boolean defaulting to False, when True returned integer encoded categoric
features are converted to pandas categorical data type based on the transform's MLinfill_type.
In some cases this may actually slightly increase dataframe memory usage and
is redundant with information stored in the postprocess_dict, however we expect there
are potential downstream workflows where a user may prefer categoric data type which
is the reason for the option. Note that for cases where a categoric transform feature
did not have full representation in the training data set (e.g. as could be the case for fixed width bins with bnwd/bnwo/variants),
it is possible that this option will result in test data returned with missing values designated
as NaN entries (which is partly why this is not the default). Note that this same basis is carried through to postmunge.
* shuffletrain: can be passed as one of _{True, False, 'traintest'}_ which
indicates if the returned sets will have their rows shuffled. Defaults to True
for shuffling the train data but not the test data. False deactivates. To shuffle
both train and test data can pass as 'traintest'. Note that this impacts the
validation split if a valpercent was passed, where under the default of True
validation data will be randomly sampled and shuffled, or when shuffletrain is
deactivated validation data will be based on a partition of sequential rows from
the bottom of the train set. Note that row correspondence with shuffling is
maintained between train / ID / label sets. Note that we recommend deactivating
shuffletrain for sequential (time-series) data.
* noise_augment: accepts type int or float(int) >=0, defaults to 0. Used to specify
a count of additional duplicates of training data prepared and concatenated with the
original train set. Intended for use in conjunction with noise injection, such that
the increased size of training corpus can be a form of data augmentation. (Noise injection
still needs to be assigned, e.g. by assigning root categories in assigncat or could
turn on automated noise with powertransform = 'DP1'). Note that
injected noise will be uniquely randomly sampled with each duplicate. When noise_augment
is received as a dtype of int, one of the duplicates will be prepared without noise. When
noise_augment is received as a dtype of float(int), all of the duplicates will be prepared
with noise. When shuffletrain is activated the duplicates are collectively shuffled, and can distinguish
between duplicates by the original df_train.shape in comparison to the ID set's Automunge_index.
Please be aware that with large dataframes a large duplicate count may run into memory constraints,
in which case additional duplicates can be prepared separately in postmunge(.). Note that the entropy seed budget only accounts for preparing one set of data, for the noise_augment option with entropy seeding we recommend passing a custom extra_seed_generator with a sampling_type specification, which will result in internal samplings of additional entropy seeds for each additional noise_augment duplicate (or for the bulk_seeds case with external sampling can increase entropy_seed budget proportional to the number of additional duplicates with noise).
* dupl_rows: can be passed as _(True/False/'traintest'/'test')_ which indicates
if duplicate rows will be consolidated to single instance in returned sets. (In
other words, if same row included more than once, it will only be returned once.)
Defaults to False for not activated. True applies consolidation to train set only,
'test' applies consolidation to test set only, 'traintest' applies consolidation
to both train and test sets separately. Note this is applied prior to
TrainLabelFreqLevel if elected. As implemented this does not take into account
duplicate rows in train/test data which have different labels, only one version
of features/label pair is returned.
* TrainLabelFreqLevel: can be passed as _(True/False/'traintest'/'test')_
which indicates if the TrainLabelFreqLevel method will be applied to prepare for
oversampling training data associated with underrepresented labels (aka class
imbalance). The method adds multiples of training data rows for those labels with
lower frequency resulting in an (approximately) levelized frequency. This defaults
to False. Note that this feature may be applied to numerical label sets if
the processing applied to the set includes aggregated bins, such as for example
by passing a label column to the 'exc3' category in assigncat for pass-through
force to numeric with inclusion of standard deviation bins or to 'exc4' for
inclusion of powers of ten bins. For cases where labels are included in the
test set, this may also be passed as _'traintest'_ to apply levelizing to both
train and test sets or be passed as _'test'_ to only apply levelizing to test set.
(If a label set includes multiple configurations of the labels, the levelizing
will be based on the first categoric / binned set (either one-hot or ordinal)
based on order of columns.) For more on the class imbalance problem see "A
systematic study of the class imbalance problem in convolutional neural
networks" - Buda, Maki, Mazurowski.
* powertransform: _(False/True/'excl'/'exc2'/'infill'/'infill2'/'DP1'/'DP2'/'DT1'/'DT2'/'DB1'/'DB2')_, defaults to False.
The powertransform parameter is used to select between options for derived
category assignments under automation based on received feature set properties.
- Under the default scenario, category assignments under automation are consistent with section
[Default Transformations](https://github.com/Automunge/AutoMunge#default-transformations).
- Under the True scenario, an evaluation will be performed of distribution properties to select between
box-cox (bxcx), z-score (nmbr), min-max scaling (mnmx), or mean absolute deviation scaling (MAD3) normalization
of numerical data. Please note that under automation label columns do not receive this treatment, if desired they can be assigned to category ptfm in assigncat.
- Under the 'excl' scenario, columns not explicitly assigned in assigncat are subject to excl transform
for full pass-through, including data type retention and exclusion from ML infill basis.
- Under the 'exc2' scenario, columns not explicitly assigned in assigncat are subject to exc2 transform
for pass-through with force to numeric and adjinfill, and included in ML infill basis.
- The 'infill' scenario may be used when data is already numerically encoded and user just desires
ML infill without transformations. 'infill' treats sets with any non-integer
floats with exc2 (pass-through numeric), integer sets with any negative entries or unique ratio >0.75 with exc8
(for pass-through continuous integer sets subject to ml infill regression), and otherwise
integer sets with exc5 (pass-through integer subject to ml infill classification). Of course the rule of treating
integer sets with >0.75 ratio of unique entries as targets for ML infill regression or otherwise
for classification is an imperfect heuristic. If some particular
feature set has integers intended for regression below this threshold, the defaults under
automation can be overwritten to a specific column with the assigncat parameter, such as to
assign the column to exc8 instead of exc5. Note that 'infill'
includes support for NArw aggregation with NArw_marker parameter.
- The 'infill2' scenario is similar to the 'infill' scenario, with added allowance for inclusion of
non-numeric sets, which are given an excl pass-through and excluded from ML infill basis. (May return sets not suitable for direct application of ML.)
DP1 and DP2 are used for defaulting to noise injection for numeric and (non-hashed) categoric
- 'DP1' is similar to the defaults but default numerical replaced with DPnb, categoric with DP10, binary with DPbn, hash with DPhs, hsh2 with DPh2 (labels do not receive noise in this configuration)
- 'DP2' is similar to the defaults but default numerical replaced with DPrt, categoric with DPod, binary with DPbn, hash with DPhs, hsh2 with DPh2 (labels do not receive noise in this configuration)
- 'DT1'/'DT2' are comparable to 'DP1'/'DP2' but inject noise to just test data instead of just train data
- 'DB1'/'DB2' are comparable to 'DP1'/'DP2' but inject noise to both train and test data instead of just train data
* binstransform: a boolean identifier _(True/False)_ which indicates if all
default numerical sets will receive bin processing such as to generate child
columns with boolean identifiers for number of standard deviations from
the mean, with groups for values <-2, -2-1, -10, 01, 12, and >2. This value
defaults to False.
* MLinfill: a boolean identifier _(True/False)_ defaulting to True which indicates if the ML
infill method will be applied (to columns not otherwise designated in assigninfill) to predict infill for missing
or improperly formatted data using machine learning models trained on the
rest of the df\_train set. ML infill may alternatively
be assigned to distinct columns in assigninfill when MLinfill passed as False. Note that even if sets passed
to automunge(.) have no points needing infill, when activated ML infill models will still be trained for potential use
to subsequent data passed through postmunge(.). ML infill
by default applies scikit-learn random forest machine learning models to predict infill,
which may be changed to other available auto ML frameworks via the ML_cmnd parameter.
Parameters and tuning may also be passed to the model training as demonstrated
with ML_cmnd parameter below. Order of infill model training is based on a
reverse sorting of columns by count of missing entries in the df_train set.
(As a helpful hint, if data is already numerically encoded and just want to perform
ML infill without preprocessing transformations, can pass in conjunction parameter
powertransform = 'infill')
To bidirectionally exclude particular features from each other's imputation model bases
(such as may be desired in expectation of data leakage), a user can designate via
entries to ML_cmnd['leakage_sets'], documented further below with ML_cmnd parameter.
Or to unidirectionally exclude features from another's basis, a user can designate
via entries to ML_cmnd['leakage_dict'], also documented below. To exclude a feature from
all ML infill and PCA basis, can pass as entries to a list in ML_cmnd['full_exclude'].
Please note that columns returned from transforms with MLinfilltype 'totalexclude' (such as
for the excl passthrough transform) are automatically excluded from ML infill basis.
Please note that an assessment is performed to evaluate for cases of a kind of data
leakage across features associated with correlated presence of missing data
across rows for exclusion, documented further below with ML_cmnd parameter. This assessment
can be deactivated by passing ML_cmnd['leakage_tolerance'] = False.
Please note that for incorporating stochastic injections into the derived imputations, an
option is on by default which is further documented below in the ML_cmnd entries for 'stochastic_impute_categoric'
and 'stochastic_impute_numeric'. Please note that by default the random seed passed to model
training is stochastic between applications, as further documented below in the ML_cmnd entry for
'stochastic_training_seed'.
Further detail on ML infill provided in the paper [Missing Data Infill with Automunge](https://medium.com/automunge/missing-data-infill-with-automunge-ec94d6b13433).
* infilliterate: an integer indicating how many applications of the ML
infill processing are to be performed for purposes of predicting infill.
The assumption is that for sets with high frequency of missing values
that multiple applications of ML infill may improve accuracy although
note this is not an extensively tested hypothesis. This defaults to 1.
Note that due to the sequence of model training / application, a comparable
set prepared in automunge and postmunge with this option may vary slightly in
output (as automunge(.) will train separate models on each iteration and
postmunge will just apply the final model on each iteration).
Please note that early stopping is available for infilliterate based on a comparison
on imputations of a current iteration to the preceding, with a halt when reaching both
of tolerances associated with numeric features in aggregate and categoric
features in aggregate.
Early stopping evaluation can be activated by passing to ML_cmnd
ML_cmnd['halt_iterate']=True. The tolerances can be updated from the shown defaults
as ML_cmnd['categoric_tol']=0.05 and ML_cmnd['numeric_tol']=0.03. Further detail
on early stopping criteria is that the numeric halting criteria is based on comparing
for each numeric feature the ratio of mean(abs(delta)) between imputation iterations to
the mean(abs(entries)) of the current iteration, which are then weighted between features
by the quantity of imputations associated with each feature and compared to a numeric
tolerance value, and the categoric halting criteria is based on comparing the ratio of
number of inequal imputations between iterations to the total number of imputations across
categoric features to a categoric tolerance value. Early stopping is applied as soon as
the tolerances are met for both numeric and categoric features. If early stopping criteria
is not reached the specified infilliterate will serve as the maximum number of iterations.
(Be aware that stochastic noise from stochastic_impute_numeric
and stochastic_impute_categoric has potential to interfere with early stopping criteria.
Each of these can be deactivated in ML_cmnd if desired.)
* randomseed: defaults as False, also accepts integers within 0:2\*\*31-1. When not specified,
randomseed is based on a uniform randomly sampled integer within that range using an entropy_seeds when available.
Can be manually specified such as for repeatable data set shuffling, feature importance, and other algorithms.
Although ML infill by default samples a new random seed with each model training, to apply this random seed
to all model training operations can set a ML_cmnd entry as ML_cmnd['stochastic_training_seed']=False.
* eval_ratio: a 0-1 float or integer for number of rows, defaults to 0.5, serves
to reduce the overhead of the category evaluation functions under automation by only
evaluating this sampled ratio of rows instead from the full set. Makes automunge faster.
To accommodate small data sets, the convention is that eval_ratio is only applied
when training set has > 2,000 rows.
* numbercategoryheuristic: an integer used as a heuristic. When a
categorical set has more unique values than this heuristic, it defaults
to categorical treatment via hashing processing via 'hsh2', otherwise
categorical sets default to binary encoding via '1010'. This defaults to 255.
Heuristic can be deactivated by passing as False.
* pandasoutput: selects format of returned sets. Defaults to _'dataframe'_
for returned pandas dataframe for all sets. Dataframes index is not always preserved, non-integer indexes are extracted to the ID sets,
and automunge(.) generates an application specific range integer index in ID sets
corresponding to the order of rows as they were passed to function). If set to _True_, features and ID sets are comparable, and single column label sets are converted to Pandas Series instead of dataframe. If set to _False_
returns numpy arrays instead of dataframes. Note that the dataframes will have column
specific data types, or returned numpy arrays will have a single data type.
* NArw_marker: a boolean identifier _(True/False)_ which indicates if the
returned sets will include columns with markers for source column entries subject to
infill (columns with suffix '\_NArw'). This value defaults to True. Note
that the properties of cells qualifying as candidate for infill are based
on the 'NArowtype' of the root category of transformations associated with
the column, see Library of Transformations section below for catalog, the
various NArowtype options (such as justNaN, numeric, positivenumeric, etc)
are also further clarified below in discussion around the processdict parameter.
* featureselection: applied to activate a feature importance evaluation.
Defaults to False, accepts {False, True, 'pct', 'metric', 'report'}.
If selected automunge will return a summary of feature importance findings in the featureimportance
returned dictionary. False turns off, True turns on, 'pct' performs the evaluation followed by
a dimensionality reduction based on the featurethreshold parameter to retain a % of top features.
'metric' performs the evaluation followed by a dimensionality reduction to retain features above a metric value based on featurethreshold parameter. 'report' performs the evaluation and returns a report with no
further processing of data. Feature importance evaluation requires the inclusion of a
designated label column in the train set. Note that sorted
feature importance results are returned in postprocess_dict['FS_sorted'],
including columns sorted by metric and metric2. Note that feature importance
model training inspects same ML_cmnd parameters as ML infill. (Note that any user-specified size of validationratios
if passed are used in this method, otherwise defaults to 0.2.) Note that as currently implemented
feature selection does not take into account dimensionality reductions (like PCA or Binary).
Permutation importance method was inspired by a fast.ai lecture and more information can be found in
the paper "Beware Default Random Forest Importances" by Terrence Parr, Kerem
Turgutlu, Christopher Csiszar, and Jeremy Howard. This method currently makes
use of Scikit-Learn's Random Forest predictors.
* featurethreshold: defaults to 0., accepts float in range of 0-1. Inspected when
featureselection passed as 'pct' or 'metric'. Used to designate the threshold for feature
importance dimensionality reduction. Where e.g. for 'pct' 0.9 would retain 90% of top
features, or e.g. for 'metric' 0.03 would retain features whose metric was >0.03. Note that
NArw columns are only retained for those sets corresponding to columns that "made the cut".
* inplace: defaults to False, when True the df_train (and df_test) passed to automunge(.)
are overwritten with the returned train and test sets. This reduces memory overhead.
For example, to take advantage with reduced memory overhead you could call automunge(.) as:
```
df_train, train_ID, labels, \
val, val_ID, val_labels, \
df_test, test_ID, test_labels, \
postprocess_dict = \
am.automunge(df_train, df_test=df_test, inplace=True)
```
Note that this "inplace" option is not to be confused with the default inplace conduction of transforms
that may impact grouping coherence of columns derived from same feature.
That other inplace option can be deactivated in assignparam, as may be desired for grouping coherence.
Note that all custom_train transforms have built in support for optional deactivating of inplace parameter
through assignparam which is applied external to function call. Further detail on this other inplace
option is provided in the essay [Automunge Inplace](https://medium.com/automunge/automunge-inplace-a85766404bb7).
```
assignparam = {'global_assignparam' : {'inplace' : False}}
```
* Binary: a dimensionality reduction technique whereby the set of columns from
categoric encodings are collectively encoded with binary encoding such
as may reduce the column count. This has many benefits such as
memory bandwidth and energy cost for inference I suspect, however, there
may be tradeoffs associated with ability of the model to handle outliers,
as for any new combination of boolean set in the test data the collection
will be subject to zeroinfill.
Defaults to _False_, can be passed as one of
_{False, True, 'retain', 'ordinal', 'ordinalretain', 'onehot', 'onehotretain', [list of column headers]}_.
- False: the default, Binary dimensionality reduction not performed
- True: consolidates Boolean integer sets into a single common binarization encoding with replacement
- 'retain': comparable to True, but original columns are retained instead of replaced
- 'ordinal': comparable to True, but consolidates into an ordinal encoding instead of binarization
- 'ordinalretain': comparable to 'ordinal', but original columns are retained instead of replaced
- 'onehot': comparable to True, but consolidates into a one hot encoding instead of binarization
- 'ordinalretain': comparable to 'onehot', but original columns are retained instead of replaced
A user can also pass a list of target column headers if consolidation is only desired on
a subset of the categoric features. The column headers may be as received column headers or returned column headers with suffix appenders included. To allow distinguishing between the other conventions
such as 'retain', 'ordinal', etc. in conjunction with passing a subset list of column headers,
a user may optionally include the specification embedded in set brackets {} as the first entry to the list, e.g. [{'ordinal'}, 'targetcolumn', ...], where specification may be one of
True, 'retain', 'ordinal', etc. Otherwise when the first value in list is just a column
header string the binarization convention consistent with Binary=True is applied.
In order to separately consolidate multiple sets of categoric features, one
can pass Binary as a list of lists, with the sub lists matching criteria noted preceding (such as allowance for first entry to embed specification in set brackets). For cases where a consolidation with replacement is performed these sets should be nonoverlapping. Note that each sub list may include a distinct specification convention.
Note that postmunge(.) inversion is supported in conjunction with any of these Binary options. When applying inversion based on a specified list of columns (as opposed to inversion='test' for instance), if the specification includes a Binary returned column it should include the entire set of Binary columns associated with that consolidation, and if the Binary application was in the retain convention the inversion list should specify the Binary input columns instead of the Binary output columns.
(One may wish to abstain from stochastic_impute_categoric in conjunction with Binary since it may
interfere with the extent of contraction by expanding the number of activation sets.)
Some additional detail on Binary provided in the essay [Tabular Engineering with Automunge](https://medium.com/automunge/tabular-engineering-with-automunge-4cf9c43510e).
* PCAn_components: defaults to False for no PCA dimensionality reduction performed.
A user can pass _an integer_ to define the number of PCA returned features for
purposes of dimensionality reduction, such integer to be less than the otherwise
returned number of sets. Function will default to kernel PCA for all non-negative
sets or otherwise Sparse PCA. Also if this value is passed as a _float <1.0_ then
linear PCA will be applied such that the returned number of sets are the minimum
number that can reproduce that percent of the variance.
Note this can also be passed in conjunction with assigned PCA type or parameters in
the ML_cmnd object. Note that by default boolean integer and ordinal encoded returned
columns are excluded from PCA, which convention can be updated in ML_cmnd if desired.
These methods apply PCA with the scikit-learn library.
As a special convention, if PCAn_components passed as _None_ PCA is performed when # features exceeds 0.5 # rows (as a heuristic).
(The 0.5 value can also be updated in ML_cmnd by passing to ML_cmnd['PCA_cmnd']['col_row_ratio'].)
Note that inversion as can be performed with postmunge(.) is not currently supported for columns returned from PCA.
* PCAexcl: a _list_ of column headers for columns that are to be excluded from
any application of PCA, defaults to _[]_ (an empty list) for cases where no numeric columns are desired to
be excluded from PCA. Note that column headers can be passed as consistent with the passed df_train
to exclude from PCA all columns derived from a particular input column or alternatively can be
passed with the returned column headers which include the suffix appenders to exclude just those
specific columns from PCA.
* orig_headers: accepts boolean defaults to False, when activated the returned columns have suffix appenders stripped to return consistent column headers as input. Note that this may result in redundent column headers in the returned dataframe and privacy_encode when activated takes precedence. Was created for use in workflows supporting integration of noise injection into existing data pipelines. Consistent basis applied in postmunge.
* excl_suffix: boolean selector _{True, False}_ for whether columns headers from 'excl'
transform are returned with suffix appender '\_excl' included. Defaults to False for
no suffix. For advanced users setting this to True makes navigating data structures a
little easier at small cost of aesthetics of any 'excl' pass-through column headers.
('excl' transform is for direct pass-through with no transforms, no infill, and no data type conversion.
Note that 'excl' can be cast as the default category under automation to columns not otherwise assigned by setting powertransform='excl'.)
* ML_cmnd:
The ML_cmnd allows a user to set options or pass parameters to model training
operations associated with ML infill, feature importance, or PCA. ML_cmnd is passed
as a dictionary with first tier valid keys of:
{'autoML_type', 'MLinfill_cmnd', 'customML', 'PCA_type', 'PCA_cmnd', 'PCA_retain', 'leakage_tolerance',
'leakage_sets', 'leakage_dict', 'full_exclude', 'hyperparam_tuner', 'randomCV_n_iter',
'stochastic_training_seed', 'stochastic_impute_numeric', 'stochastic_impute_numeric_mu',
'stochastic_impute_numeric_sigma', 'stochastic_impute_numeric_flip_prob', 'stochastic_impute_numeric_noisedistribution', 'stochastic_impute_categoric', 'stochastic_impute_categoric_flip_prob', 'stochastic_impute_categoric_weighted', 'halt_iterate', 'categoric_tol', 'numeric_tol', 'automungeversion', 'optuna_n_iter', 'optuna_timeout', 'optuna_kfolds', 'optuna_fasttune', 'optuna_early_stop', 'optuna_max_depth_tuning_stepsize', 'xgboost_gpu_id'}
When a user passed ML_cmnd as an empty dictionary, any default values are populated internally.
The most relevant entries here are 'autoML_type' to choose the autoML framework for predictive
models, and ML_cmnd to pass parameters to the models. The default option for 'autoML_type' is 'randomforest' which uses a Scikit-learn Random
Forest implementation, other options are supported as one of {'randomforest', 'customML',
'catboost', 'flaml'}, each discussed further below. The customML scenario is for user defined
machine learning algorithms, and documented separately later in this document in the section [Custom ML Infill Functions](https://github.com/Automunge/AutoMunge#custom-ml-infill-functions).
(Other ML_cmnd options beside autoML_type, like for early stopping through iterations, stochastic noise injections, hyperparpameter tuning, leakage assessment, etc, are documented a few paragraphs down after discussing the autoML_type scenarios.)
Here is an example of the core components of specification, which include the
autoML_type to specify the learning library, the MLinfill_cmnd to pass parameters
to the learning library, and similar options for PCA via PCA_type and PCA_cmnd.
```
ML_cmnd = {'autoML_type':'randomforest',
'MLinfill_cmnd':{'RandomForestClassifier':{}, 'RandomForestRegressor':{}},
'PCA_type':'default',
'PCA_cmnd':{}}
```
For example, a user who doesn't mind a little extra training time for ML infill
could increase the passed n_estimators beyond the scikit default of 100.
```
ML_cmnd = {'autoML_type':'randomforest',
'MLinfill_cmnd':{'RandomForestClassifier':{'n_estimators':1000},
'RandomForestRegressor':{'n_estimators':1000}}}
```
A user can also perform hyperparameter tuning of the parameters passed to the
predictive algorithms by instead of passing distinct values passing lists or
range of values. This is currently supported for randomforest.
The hyperparameter tuning defaults to grid search for cases
where user passes any of fit parameters as lists or ranges, for example:
```
ML_cmnd = {'autoML_type':'randomforest',
'hyperparam_tuner':'gridCV',
'MLinfill_cmnd':{'RandomForestClassifier':{'max_depth':range(4,6)},
'RandomForestRegressor' :{'max_depth':[3,6,12]}}}
```
A user can also perform randomized search via ML_cmnd, and pass parameters as
distributions via scipy stats module such as:
```
from scipy import stats
ML_cmnd = {'autoML_type':'randomforest',
'hyperparam_tuner' : 'randomCV',
'randomCV_n_iter' : 15,
'MLinfill_cmnd':{'RandomForestClassifier':{'max_depth':stats.randint(3,6)},
'RandomForestRegressor' :{'max_depth':[3,6,12]}}}
```
Other autoML options besides random forest are also supported, each of which requires installing
the associated library (which aren't listed in the automunge dependencies). Citations associated with each
of these libraries are provided for reference.
One autoML option for ML infill and feature importance is by the CatBoost library.
Requires externally installing CatBoost library. Uses early stopping by default for regression
and no early stopping by default for classifier. Note that the random_seed
parameter is already passed based on the automunge(.) randomseed. Further information
on the CatBoost library is available on arxiv as Anna Veronika Dorogush, Vasily Ershov, Andrey Gulin. CatBoost: gradient
boosting with categorical features support [arXiv:1810.11363](https://arxiv.org/abs/1810.11363).
```
#CatBoost available by passing ML_cmnd as
ML_cmnd = {'autoML_type':'catboost'}
```
Can pass parameters to model initialization and fit operation as:
```
#example of turning on early stopping for classifier
#by passing a eval_ratio for validation set which defaults to 0.15 for regressor
#note eval_ratio is an Automunge parameter, other parameters accepted are those from CatBoost library
ML_cmnd = {'autoML_type':'catboost',
'MLinfill_cmnd' : {'catboost_classifier_model' : {},
'catboost_classifier_fit' : {'eval_ratio' : 0.15 },
'catboost_regressor_model' : {},
'catboost_regressor_fit' : {}}}
```
Another ML infill option is available by the FLAML library. Further information
on the FLAML library is available on arxiv as Chi Wang, Qingyun Wu, Markus Weimer,
Erkang Zhu. FLAML: A Fast and Lightweight AutoML Library [arXiv:1911.04706](https://arxiv.org/abs/1911.04706).
```
#FLAML available by passing ML_cmnd as
ML_cmnd = {'autoML_type':'flaml'}
```
Can pass parameters to fit operation as:
```
#example of setting time budget in seconds for training
ML_cmnd = {'autoML_type':'flaml',
'MLinfill_cmnd' : {'flaml_classifier_fit' : {'time_budget' : 15 },
'flaml_regressor_fit' : {'time_budget' : 15}}}
```
Another option is available for gradient boosting via the XGBoost library. Further information
on the XGBoost library is available on arxiv as Tianqi Chen, Carlos Guestrin. XGBoost: A Scalable
Tree Boosting System [arXiv:1603.02754](https://arxiv.org/abs/1603.02754).
```
#XGboost available by passing ML_cmnd as
ML_cmnd = {'autoML_type':'xgboost'}
```
The XGBoost implementation has Bayesian hyperparameter tuning available by way of the Optuna library by activating ML_cmnd['hyperparam_tuner'] = 'optuna_XGB1'. Optuna tuning accepts parameters for designating the max number of tuning iterations ('optuna_n_iter'), max tuning time in seconds ('optuna_timeout'), selecting a count for k-fold cross validation for tuning ('optuna_kfolds'), activating only evaluating one k-fold per trial ('optuna_fasttune'), selecting an early stopping criteria for max number of tuning cycles without improved performance ('optuna_early_stop'), and selecting a step size for max_depth tuning (with longer tuning times it may be beneficial to change from 2 to 1) ('optuna_max_depth_tuning_stepsize'). The early stopping criteria optuna_n_iter/optuna_timeout/optuna_early_stop are the values applied per target feature (tuning for a feature is halted when one of these conditions are met). Can pass specific parameters (such as selecting whether to run inference with GPU or CPU with 'predictor'), activate GPU training, tune other hyperparameters with optuna, and set tuning options from the shown defaults as:
```
ML_cmnd = {'autoML_type' : 'xgboost',
'MLinfill_cmnd' : {'xgboost_classifier_fit' : {'predictor' : 'cpu_predictor' },
'xgboost_regressor_fit' : {'predictor' : 'cpu_predictor' }},
'xgboost_gpu_id' : 0,
'hyperparam_tuner' : 'optuna_XG1',
'optuna_n_iter' : 100,
'optuna_timeout' : 600,
'optuna_kfolds' : 5,
'optuna_fasttune' : True,
'optuna_early_stop': 50,
'optuna_max_depth_tuning_stepsize' : 2,
}
```
The implementation makes of XGBoost's "scikit-learn API", so accepted parameters are consistent with XGBClassifier and XGBRegressor. Please note that we recommend setting the gpu_id with ML_cmnd['xgboost_gpu_id'] (rather than passing through parameters) for consistent treatment between tuning and training, which automatically sets tree_method as gpu_hist. (If you intend to put the automunge(.) returned postprocess_dict into production you may want to set the predicter to cpu_predictor as shown so can run ML infill inference without a GPU.) If you don't know your gpu device id, they are usually integers (e.g. if you have one CUDA gpu the device id is usually the integer 0, you can verify this by passing "nvidia-smi" in a terminal window). 'xgboost_gpu_id' defaults to False when not specified, meaning training and inference are conducted on CPU.
Further information on the Optuna library is available on arxiv as Takuya Akiba, Shotaro Sano, Toshihiko Yanase, Takeru Ohta, Masanori Koyama. Optuna: A Next-generation Hyperparameter Optimization Framework. [arXiv:1907.10902](https://arxiv.org/abs/1907.10902#). Our tuning implementation owes a thank you to a tutorial provided by Optuna.
Please note that model training by default incorporates a random random seed with each application,
as can be deactivated by passing ML_cmnd['stochastic_training_seed'] = False to defer to the
automunge(.) randomseed parameter.
Please note that there is a defaulted option to inject stochastic noise into derived imputations that
can be deactivated for numeric features by passing ML_cmnd['stochastic_impute_numeric'] = False
and/or categoric features by passing ML_cmnd['stochastic_impute_categoric'] = False.
Numeric noise injections sample from either a default laplace distribution or optionally a normal
distribution. Default noise profile is mu=0, sigma=0.03, and flip_prob=0.06 (where flip_prob is ratio
of a feature set's imputations receiving injections). Please note that this scale is based on a
min/max scaled representation of the imputations. Parameters can be configured by passing
ML_cmnd entries as floats to ML_cmnd['stochastic_impute_numeric_mu'],
ML_cmnd['stochastic_impute_numeric_sigma'],
ML_cmnd['stochastic_impute_numeric_flip_prob'] or as a string to
ML_cmnd['stochastic_impute_numeric_noisedistribution'] as one of {'normal', 'laplace', 'abs_normal', 'negabs_normal', 'abs_laplace', 'negabs_laplace'}.
Categoric noise injections sample from a uniform random draw from the set of unique
activation sets in the training data (as may include one or more columns for
categoric representations), such that for a ratio of a feature's set's imputations based on
the flip_prob (defaulting to 0.03 for categoric), each target imputation activation set is replaced with
the randomly drawn activation set. Parameter can be configured by passing
an ML_cmnd entry as a float to ML_cmnd['stochastic_impute_categoric_flip_prob'].
Categoric noise injections by default weight injections per distribution of activations as found in train set.
This can be deactivated by setting ML_cmnd['stochastic_impute_categoric_weighted'] as False.
(Please note that we suspect stochastic injections to imputations may have potential to interfere
with infilliterate early stopping criteria associated with ML_cmnd['halt_iterate'] documented
above with the infilliterate parameter.)
To bidirectionally exclude particular features from each other's imputation model bases
(such as may be desired in expectation of data leakage), a user can designate via
entries to ML_cmnd['leakage_sets'], which accepts entry of a list of column headers
or as a list of lists of column headers, where for each list of column headers,
entries will be excluded from each other's imputation model basis. We suggest
populating with column headers in form of data passed to automunge(.) (before suffix
appenders) although specific returned column headers can also be included if desired.
To unidirectionally exclude particular features from another feature's imputation model basis,
a user can designate via entries to ML_cmnd['leakage_dict'], which accepts entry of a dictionary
with target feature keys and values of a set of features to exclude from the target feature's
basis. This also accepts headers in either of input or returned convention.
To exclude a feature from ML infill basis of all other features, can pass as a list of entries to
ML_cmnd['full_exclude']. This also accepts headers in either of input or returned convention.
Please note that columns returned from transforms with MLinfilltype 'totalexclude' (such as
for the excl passthrough transform) are automatically excluded from model training basis.
Note that entries to 'full_exclude' are also excluded from PCA.
Please note that an operation is performed to evaluate for cases of a kind of data
leakage across features associated with correlated presence of missing data
across rows. Leakage tolerance is associated with an automated evaluation for a
potential source of data leakage across features in their respective imputation
model basis. The method compares aggregated NArw activations from a target feature
in a train set to the surrounding features in a train set and for cases where
separate features share a high correlation of missing data based on the shown
formula we exclude those surrounding features from the imputation model basis
for the target feature.
((Narw1 + Narw2) == 2).sum() / NArw1.sum() > leakage_tolerance
Where target features are those input columns with some returned column serving
as target for ML infill. ML_cmnd['leakage_tolerance'] defaults to 0.85 when not
specified, and can be set as 1 or False to deactivate the assessment.
If no ML infill model is trained due to insufficient features remaining after leakage carveouts for a target feature, a validation result is recorded in postprocess_dict['miscparameters_results']['not_enough_samples_or_features_for_MLinfill_result']['(feature)'].
A user can also assign specific methods for PCA transforms. Current PCA_types
supported include one of {'PCA', 'SparsePCA', 'KernelPCA'}, all via Scikit-Learn.
Note that the n_components are passed separately with the PCAn_components
argument noted above. A user can also pass parameters to the PCA functions
through the PCA_cmnd, for example one could pass a kernel type for KernelPCA
as:
```
ML_cmnd = {'PCA_type':'KernelPCA',
'PCA_cmnd':{'kernel':'sigmoid'}}
```
Note that for the default of ML_cmnd['PCA_type'] = 'default', PCA will default to KernelPCA
for all non-negative sets or otherwise Sparse PCA (unless PCAn_components was passed as float
between 0-1 in which case will apply as 'PCA'.
By default, ML_cmnd['PCA_cmnd'] is initialized internal to library with {'bool_ordl_PCAexcl':True},
which designates that returned ordinal and boolean encoded columns are to be excluded from PCA.
This convention by be turned off by passing as False, or to only exclude boolean integer but
not ordinal encoded columns can pass ML_cmnd['PCA_cmnd'] as {'bool_PCA_excl':True}.
For the PCA aggregation to be performed without replacement, can pass ML_cmnd['PCA_retain']=True.
* assigncat: assigncat accepts a dictionary used to assign root categories of transformation to
input features. The keys of the dictionary accept root transformation categories and the corresponding
values should be assigned as a string or list of strings representing column headers of input features.
```
#Here are a few representative root categories.
#first row: categoric encodings
#second row: corresponding categoric encodings with noise injection
#third row: numeric normalizaitons and corresponding normalizations with noise
#fourth row: examples of binning transforms (as could be added to a normalization family tree)
#fifth row: miscellaneous, including integer sets, search, string parsing, explainability support, and passthrough
assigncat = {'1010':[], 'onht':[], 'ordl':[], 'bnry':[], 'hash':[], 'hsh2':[],
'DP10':[], 'DPoh':[], 'DPod':[], 'DPbn':[], 'DPhs':[], 'DPh2':[],
'nmbr':[], 'mnmx':[], 'retn':[], 'DPnb':[], 'DPmm':[], 'DPrt':[],
'bins':[], 'pwr2':[], 'bnep':[], 'bsor':[], 'por2':[], 'bneo':[],
'ntgr':[], 'srch':[], 'or19':[], 'tlbn':[], 'excl':[], 'exc2':[]}
```
Full options are provided in document below (in section
titled "Library of Transformations"). [Library of Transformations](https://github.com/Automunge/AutoMunge#library-of-transformations)
A user may add column header identifier strings to each of these lists to assign
a distinct specific processing approach to any column (including labels). Note
that this processing category will serve as the "root" of the tree of transforms
as defined in the transformdict. Note that additional categories may be passed if
defined in the passed transformdict and processdict. An example of usage here
could be to assign the numeric noise injection transform 'DPnb' to two input features
we'll call 'input_column_1' and 'input_column_2'.
```
assigncat = {'DPnb':['input_column_1', 'input_column_2']}
```
Note that for single entry column assignments a user can just pass the string or integer
of the column header without the list brackets.
Note tht a small number of transforms, such as DPmp or DPse, support assigncat specification
with multiple input columns treated as a single feature, available by in the assigncat
specification replacing a single input header string with a {set} of input header strings.
```
assigncat = {'DPmp':[{'input_column_1', 'input_column_2'}]}
```
* assignparam:
A user may pass column-specific or category specific parameters to those transformation
functions that accept parameters. Any parameters passed to automunge(.) will be saved in
the postprocess_dict and consistently applied in postmunge(.). assignparam is
a dictionary that should be formatted per following example:
```
#template:
assignparam = {'global_assignparam' : {'(parameter)': 42},
'default_assignparam' : {'(category)' : {'(parameter)' : 42}},
'(category)' : {'(column)' : {'(parameter)' : 42}}}
#example:
assignparam = {'category1' : {'column1' : {'param1' : 123}, 'column2' : {'param1' : 456}},
'category2' : {'column3' : {'param2' : 'abc', 'param3' : 'def'}}}
```
In other words: The first layer keys are the transformation category for
which parameters are intended. The second layer keys are string identifiers
for the columns for which the parameters are intended. The third layer keys
are the parameters whose values are to be passed. To specify new default
parameters for a given transformation category 'default_assignparam' can
be applied, or to specify global parameters for all transformation functions
'global_assignparam' can be applied. Transforms that do not accept a particular
parameter will just ignore the specification.
As an example with actual parameters, consider the transformation category
'splt' intended for 'column1', which accepts parameter 'minsplit' for minimum
character length of detected overlaps. If we wanted to pass 4 instead of the
default of 5:
```
assignparam = {'splt' : {'column1' : {'minsplit' : 4}}}
```
Note that the category identifier should be the category entry to the family
tree primitive associated with the transform, which may be different than the
root category of the family tree assigned in assigncat. The set of family
tree definitions for root categories are included below for reference. Generally
speaking, the transformation category to serve as a target for asisgnparam
assignment will match the recorded suffix appender of the returned column headers.
As an example, to demonstrate edge case for cases where the transformation category does not match
the transformation function (based on entries to transformdict and
processdict), if we want to pass a parameter to turn off UPCS transform included
in or19 family tree and associated with the or19 transformation category for
instance, we would pass the parameter to or19 instead of UPCS because assignparam
inspects the transformation category associated with the transformation function,
and UPCS function is the processdict entry for or19 category entry in the family
tree primitives associated with the or19 root category, even though 'activate' is
an UPCS transformation function parameter. A helpful rule of thumb to help distinguish is that
the suffix appender recorded in the returned column associated with an applied transformation
function should match the transformation category serving as target for assignparam assignment,
as in this case the UPCS transform records a 'or19' suffix appender. (This clarification
intended for advanced users to avoid ambiguity.)
```
assignparam = {'or19' : {'column1' : {'activate' : False}}}
```
Note that column string identifiers may just be the source column string or may
include the suffix appenders for downstream columns serving as input to the
target transformation function, such as may be useful if multiple versions of
the same transformation are applied within the same family tree. If more than
one column identifier matches a column in assignparam entry to a transformation
category (such as both the source column and the derived column serving as input
to the transformation function), the derived column (such as may include suffix
appenders) will take precedence.
Note that if a user wishes to overwrite the default parameters associated with a
particular category for all columns without specifying them individually they can
pass a 'default_assignparam' entry as follows (this only overwrites those parameters
that are not otherwise specified in assignparam).
```
assignparam = {'category1' : {'column1' : {'param1' : 123}, 'column2' : {'param1' : 456}},
'category2' : {'column3' : {'param2' : 'abc', 'param3' : 'def'}},
'default_assignparam' : {'category3' : {'param4' : 789}}}
```
Or to pass the same parameter to all transformations to all columns, can use the
'global_assignparam'. The global_assignparam may be useful for instance to turn off
inplace transformations such as to retain family tree column grouping correspondence
in returned set. Transformations that do not accept a particular parameter will just
ignore.
```
assignparam = {'global_assignparam' : {'inplace' : False}}
```
In order of precedence, parameter assignments may be designated targeting a transformation
category as applied to a specific column header with suffix appenders, a transformation
category as applied to an input column header (which may include multiple instances),
all instances of a specific transformation category, all transformation categories, or may
be initialized as default parameters when defining a transformation category.
See the Library of Transformations section below for those transformations that
accept parameters.
* assigninfill
```
#Here are the current infill options built into our library, which
#we are continuing to build out.
assigninfill = {'stdrdinfill':[], 'MLinfill':[], 'zeroinfill':[], 'oneinfill':[],
'adjinfill':[], 'meaninfill':[], 'medianinfill':[], 'negzeroinfill':[],
'modeinfill':[], 'lcinfill':[], 'naninfill':[]}
```
A user may add column identifier strings to each of these lists to designate the
column-specific infill approach for missing or improperly formatted values. The
source column identifier strings may be passed for assignment of common infill
approach to all columns derived from same source column, or derived column identifier
strings (including the suffix appenders from transformations) may be passed to assign
infill approach to a specific derived column. Note that passed derived column headers
take precedence in case of overlap with passed source column headers. Note that infill
defaults to MLinfill if nothing assigned and the MLinfill argument to automunge is set
to True. Note that for single entry column assignments a user can just pass the string
or integer of the column header without the list brackets. Note that the infilled cells
are based on the rows corresponding to activations from the NArw_marker parameter.
```
# - stdrdinfill : the default infill specified in the library of transformations for
# each transform below.
# - MLinfill : for MLinfill to distinct columns when MLinfill parameter not activated
# - zeroinfill : inserting the integer 0 to missing cells.
# - oneinfill : inserting the integer 1.
# - negzeroinfill : inserting the float -0.
# - adjinfill : passing the value from the preceding row to missing cells.
# - meaninfill : inserting the mean derived from the train set to numeric columns.
# - medianinfill : inserting the median derived from the train set to numeric columns.
# (Note currently boolean columns derived from numeric are not supported
# for mean/median and for those cases default to those infill from stdrdinfill.)
# - interpinfill : performs linear interpolation to numeric sets, based on pandas interpolate
# - modeinfill : inserting the most common value for a set, note that modeinfill
# supports multi-column boolean encodings, such as one-hot encoded sets or
# binary encoded sets.
# - lcinfill : comparable to modeinfill but with least common value instead of most.
# - naninfill : inserting NaN to missing cells.
#an example of passing columns to assign infill via assigninfill:
#for source column 'column1', which hypothetically is returned through automunge(.) as
#'column1_nmbr', 'column1_mnmx', 'column1_bxcx_nmbr'
#we can assign MLinfill to 'column1_bxcx_nmbr' and meaninfill to the other two by passing
#to an automunge call:
assigninfill = {'MLinfill':['column1_bxcx_nmbr'], 'meaninfill':['column1']}
```
* assignnan: for use to designate data set entries that will be targets for infill, such as
may be entries not covered by NArowtype definitions from processdict. For example, we have
general convention that NaN (as np.nan) is a target for infill, but a data set may be passed with a custom
string signal for infill, such as 'unknown'. This assignment operator saves the step of manual
munging prior to passing data to functions by allowing user to specify custom targets for infill.
assignnan accepts following form, populated in first tier with any of 'categories'/'columns'/'global'
```
assignnan = {'categories':{}, 'columns':{}, 'global':[]}
```
Note that global takes entry as a list, while categories and columns take entries as a dictionary
with values of the target assignments and corresponding lists of terms, which could be populated
with entries as e.g.:
```
assignnan = {'categories' : {'cat1' : ['unknown1']},
'columns' : {'col1' : ['unknown2']},
'global' : ['unknown3']}
```
Where 'cat1' is example of root category, 'col1' is example of source column header, and 'unknown1'/2/3
are examples of entries intended for infill corresponding to each. In cases of redundant specification,
global takes precedence over columns which takes precedence over categories. Note that lists of terms
can also be passed as single values such as string / number for internal conversion to list.
assignnan also supports stochastic and range based injections, such as to target for infill specific
segments of a set's distribution. 'injections' can be passed to assignnan as:
```
assignnan = {'injections' : {'(column)' : {'inject_ratio' : (float),
'range' : {'ratio' : (float),
'ranges' : [[min1, max1], [min2, max2]]},
'minmax_range' : {'ratio' : (float),
'ranges' : [[min1, max1], [min2, max2]]},
'entries' : ['(entry1)', '(entry2)'],
'entry_ratio' : {'(entry1)' : (float),
'(entry2)' : (float)}
}
}
}
#where injections may be specified for each source column passed to automunge(.)
#- inject_ratio is uniform randomly injected nan points to ratio of entries
#- range is injection within a specified range based on ratio float defaulting to 1.0
#- minmax_range is injection within scaled range (accepting floats 0-1 based on received
#column max and min (returned column is not scaled)
#- entries are full replacement of specific entries to a categoric set
#- entry_ratio are partial injection to specific entries to a categoric set per specified float ratio
```
* transformdict: a dictionary allowing a user to pass a custom tree of transformations or to overwrite
family trees defined in the transform_dict internal to the library. Defaults to _{}_ (an empty dictionary).
Note that a user may define their own (traditionally 4 character) string "root categories"
by populating a "family tree" of transformation categories associated with that root category,
which are a way of specifying the type and order of transformation functions to be applied.
Each category populated in a family tree requires its own transformdict root category family tree definition
as well as an entry in the processdict described below for assigning associated transformation functions and data properties.
Note that the library has an internally defined library of transformation categories prepopulated in the
internal transform_dict which are detailed below in the Library of Transformations section of this document.
For clarity transformdict refers to the user passed data structure which is subsequently consolidated into the internal "transform_dict" (with underscore) data structure. The returned version in postprocess_dict['transform_dict'] records entries that were inspected in the associated automunge(.) call.
```
#transform_dict is for purposes of populating
#for each transformation category's use as a root category
#a "family tree" set of associated transformation categories
#which are for purposes of specifying the type and order of transformation functions
#to be applied when a transformation category is assigned as a root category
#we'll refer to the category key to a family as the "root category"
#we'll refer to a transformation category entered into
#a family tree primitive as a "tree category"
#a transformation category may serve as both a root category
#and a tree category
#each transformation category will have a set of properties assigned
#in the corresponding process_dict data structure
#including associated transformation functions, data properties, and etc.
#a root category may be assigned to a column with the user passed assigncat
#or when not specified may be determined under automation via _evalcategory
#when applying transformations
#the transformation functions associated with a root category
#will not be applied unless that same category is populated as a tree category
#the family tree primitives are for purposes of specifying order of transformations
#as may include generations and branches of derivations
#as well as for managing column retentions in the returned data
#(as in some cases intermediate stages of transformations may or may not have desired retention)
#the family tree primitives can be distinguished by types of
#upstream/downstream, supplement/replace, offsping/no offspring
#___________
#'parents' :
#upstream / first generation / replaces column / with offspring
#'siblings':
#upstream / first generation / supplements column / with offspring
#'auntsuncles' :
#upstream / first generation / replaces column / no offspring
#'cousins' :
#upstream / first generation / supplements column / no offspring
#'children' :
#downstream parents / offspring generations / replaces column / with offspring
#'niecesnephews' :
#downstream siblings / offspring generations / supplements column / with offspring
#'coworkers' :
#downstream auntsuncles / offspring generations / replaces column / no offspring
#'friends' :
#downstream cousins / offspring generations / supplements column / no offspring
#___________
#each of the family tree primitives associated with a root category
#may have entries of zero, one, or more transformation categories
#when a root category is assigned to a column
#the upstream primitives are inspected
#when a tree category is found
#as an entry to an upstream primitive associated with the root category
#the transformation functions associated with the tree category are performed
#if any tree categories are populated in the upstream replacement primitives
#their inclusion supersedes supplement primitive entries
#and so the input column to the transformation is not retained in the returned set
#with the column replacement either achieved by an inplace transformation
#or subsequent deletion operation
#when a tree category is found
#as an entry to an upstream primitive with offspring
#after the associated transformation function is performed
#the downstream primitives of the family tree of the tree category is inspected
#and those downstream primitives are treated as a subsequent generation's upstream primitives
#where the input column to that subsequent generation is the column returned
#from the transformation function associated with the upstream tree category
#this is an easy point of confusion so as further clarification on this point
#the downstream primitives associated with a root category
#will not be inspected when root category is applied
#unless that root category is also entered as a tree category entry
#in one of the root category's upstream primitives with offspring
```
Once a root category has been defined, it can be assigned to a received column in assigncat.
For example, a user wishing to define a new set of transformations for a numerical set can define a new root category 'newt'
that combines NArw, min-max, box-cox, z-score, and standard deviation bins by passing a
transformdict as:
```
transformdict = {'newt' : {'parents' : ['bxc4'],
'siblings': [],
'auntsuncles' : ['mnmx', 'bins'],
'cousins' : ['NArw'],
'children' : [],
'niecesnephews' : [],
'coworkers' : [],
'friends' : []}}
#Where since bxc4 is passed as a parent, this will result in pulling
#offspring keys from the bxc4 family tree, which has a nbr2 key as children.
#from automunge internal library:
transform_dict.update({'bxc4' : {'parents' : ['bxcx'],
'siblings': [],
'auntsuncles' : [],
'cousins' : ['NArw'],
'children' : [],
'niecesnephews' : [],
'coworkers' : ['nbr2'],
'friends' : []}})
#note that 'nbr2' is passed as a coworker primitive meaning no downstream
#primitives would be accessed from the nbr2 family tree. If we wanted nbr2 to
#incorporate any offspring from the nbr2 tree we could instead assign as children
#or niecesnephews.
#Having defined this root category 'newt', we can then assign to a column in assigncat
#(Noting that we still need a corresponding processdict entry unless overwriting an internal transform_dict entry.)
assigncat = {'newt':['targetcolumn']}
#Note that optionally primitives without entries can be omitted,
#and list brackets can be omitted for single entries to a primitive
#the following is an equivalent specification to the 'newt' entry above
transformdict = {'newt' : {'parents' : 'bxc4',
'auntsuncles' : ['mnmx', 'bins'],
'cousins' : 'NArw'}}
```
Basically here 'newt' is the root category key and once defined can be assigned as a root category in assigncat
to be applied to a column or can also be passed to one of the family primitives associated with itself or some other root category
to apply the corresponding transformation functions populated in the processdict entry. Once a transformation category is accessed
based on an entry to a family tree primitive associated with a root category assigned to a column,
the corresponding processdict transformation function is applied, and if it was accessed as a family tree
primitive with downstream offspring then those offspring keys are pulled from
that key's family tree. For example, here mnmx is passed as an auntsuncles which
means the mnmx processing function is applied with no downstream offspring. The
bxc4 key is passed as a parent which means the transform associated with the bxc4 category is applied followed
by any downstream transforms from the bxc4 key family tree, which we also show.
Note the family primitives tree can be summarized as:
```
'parents' : upstream / first generation / replaces column / with offspring
'siblings': upstream / first generation / supplements column / with offspring
'auntsuncles' : upstream / first generation / replaces column / no offspring
'cousins' : upstream / first generation / supplements column / no offspring
'children' : downstream parents / offspring generations / replaces column / with offspring
'niecesnephews' : downstream siblings / offspring generations / supplements column / with offspring
'coworkers' : downstream auntsuncles / offspring generations / replaces column / no offspring
'friends' : downstream cousins / offspring generations / supplements column / no offspring
```

Note that a user should avoid redundant entries across a set of upstream or downstream primitives.
If a redundant transformation function is desired to a distinct upstream or downstream inputcolumn (such as may be desired
to apply same transform but with different parameters), each of the redundant applications needs a distinct transformation category defined in
the processdict (and a distinct suffix appender which is automatic based on the transformation category).
Since there is recursion involved a user should be careful of creating infinite loops from passing
downstream primitive entries with offspring whose own offspring coincide with an earlier generation.
(The presence of infinite loops is tested for to a max depth of 1111 offspring, an arbitrary figure.)
Note that transformdict entries can be defined to overwrite existing root category entries defined in the internal library.
For example, if we wanted our default numerical scaling to be by min-max instead of z-score normalization, one way we could accomplish
that is to overwrite the 'nmbr' family tree which is the default root category applied to numeric sets under automation. (Other default
root categories under automation are detailed further below in the
"[Default Tranformations](https://github.com/Automunge/AutoMunge#default-transformations)" section.) An alternate approach could be to
overwrite the nmbr processdict entry which we'll demonstrate shortly.
```
transformdict = {'nmbr' : {'auntsuncles' : 'mnmx',
'cousins' : 'NArw'}}
```
Note that when we define a new root category family tree such as the 'newt' example shown above, we also need
to define a corresponding processdict entry for the new category, which we detail next.
Further detail on the transformdict data format provided in the essay [Data Structure](https://medium.com/automunge/data-structure-59e52f141dd6). For tutorials on defining a family tree, see also the essay [Specification of Derivations with Automunge](https://medium.com/automunge/specification-of-derivations-with-automunge-6174ca227184).
* processdict: a dictionary allowing a user to specify transformation category properties corresponding
to new categories defined in transformdict or to overwrite process_dict entries defined internal to the library.
Defaults to _{}_ (an empty dictionary). The types of properties specified include the associated transformation
functions, types of data that will be targets for infill, a classification of data types (such as between numeric, integer, categoric, etc),
and more detailed below. All transformation categories used in transformdict, including
those used as root categories as well as transformation category entries to family tree primitives associated
with a root category, require a corresponding entry in the processdict to define transformation category
properties. Only in cases where a transformdict entry is being passed to overwrite an existing category internal
to the library is a corresponding processdict entry not required. However note that a processdict entry can be passed
without a corresponding root category definition in transformdict, which may be used when passing a custom transformation category to a family tree primitive without offspring.
We'll describe the options for processdict entries here. For clarity processdict refers to the user passed data structure which is subsequently consolidated into the internal "process_dict" (with underscore) data structure.
The returned version in postprocess_dict['process_dict'] records entries that were inspected in the
associated automunge(.) call.
```
#A user should pass either a pair of processing functions to both
#dualprocess and postprocess, or alternatively just a single processing
#function to singleprocess, and omit or pass None to those not used.
#A user can also pass an inversion function to inverseprocess if available.
#Most of the transforms defined internal to the library follow this convention.
#dualprocess: for passing a processing function in which normalization
# parameters are derived from properties of the training set
# and jointly process the train set and if available corresponding test set
#singleprocess: for passing a processing function in which no normalization
# parameters are needed from the train set to process the
# test set, such that train and test sets processed separately
#postprocess: for passing a processing function in which normalization
# parameters originally derived from the train set are applied
# to separately process a corresponding test set
# An entry should correspond to the dualprocess entry.
#inverseprocess: for passing a processing function used to invert
# a corresponding forward pass transform
# An entry should correspond to the dualprocess or singleprocess entry.
#__________________________________________________________________________
#Alternative streamlined processing function conventions are also available
#which may be populated as entries to custom_train / custom_test / custom_inversion.
#These conventions are documented in the readme section "Custom Transformation Functions".
#In cases of redundancy custom_train entry specifications take precedence
#over dualprocess/singleprocess/postprocess entries.
#custom_train: for passing a train set processing function in which normalization parameters
# are derived from properties of the training set. Will be used to process both
# train and test data when custom_test not provided (in which case similar to singleprocess convention).
#custom_test: for passing a test set processing function in which normalization parameters
# that were derived from properties of the training set are used to process the test data.
# When omitted custom_train will be used to process both the train and test data.
# An entry should correspond to the custom_train entry.
#custom_inversion: for passing a processing function used to invert
# a corresponding forward pass transform
# An entry should correspond to the custom_train entry.
#___________________________________________________________________________
#The processdict also specifies various properties associated with the transformations.
#At a minimum, a user needs to specify NArowtype and MLinfilltype or otherwise
#include a functionpointer entry.
#___________________________________________________________________________
#NArowtype: classifies the type of entries that are targets for infill.
# can be entries of {'numeric', 'integer', 'justNaN', 'exclude',
# 'positivenumeric', 'nonnegativenumeric',
# 'nonzeronumeric', 'parsenumeric', 'datetime'}
# Note that in the custom_train convention this is used to apply data type casting prior to the transform.
# - 'numeric' for source columns with expected numeric entries
# - 'integer' for source columns with expected integer entries
# - 'justNaN' for source columns that may have expected entries other than numeric
# - 'binary' similar to justNaN but only the top two most frequent entries are considered valid
# - 'exclude' for source columns that aren't needing NArow columns derived
# - 'totalexclude' for source columns that aren't needing NArow columns derived,
# also excluded from assignnan global option and nan conversions for missing data
# - 'positivenumeric' for source columns with expected positive numeric entries
# - 'nonnegativenumeric' for source columns with expected non-negative numeric (zero allowed)
# - 'nonzeronumeric' for source columns with allowed positive and negative but no zero
# - 'parsenumeric' marks for infill strings that don't contain any numeric characters
# - 'datetime' marks for infill cells that aren't recognized as datetime objects
# ** Note that NArowtype also is used as basis for metrics evaluated in drift assessment of source columns
# ** Note that by default any np.inf values are converted to NaN for infill
# ** Note that by default python None entries are treated as targets for infill
#___________________________________________________________________________
#MLinfilltype: classifies data types of the returned set,
# as may determine what types of models are trained for ML infill
# can be entries {'numeric', 'singlct', 'binary', 'multirt', 'concurrent_act', 'concurrent_nmbr',
# '1010', 'exclude', 'boolexclude', 'ordlexclude', 'totalexclude'}
# 'numeric' single columns with numeric entries for regression (signed floats)
# 'singlct' for single column sets with ordinal entries (nonnegative integer classification)
# 'integer' for single column sets with integer entries (signed integer regression)
# 'binary' single column sets with boolean entries (0/1)
# 'multirt' categoric multicolumn sets with boolean entries (0/1), up to one activation per row
# '1010' for multicolumn sets with binary encoding via 1010, boolean integer entries (0/1),
# with distinct encoding representations by the set of activations
# 'concurrent_act' for multicolumn sets with boolean integer entries as may have
# multiple entries in the same row, different from 1010
# in that columns are independent
# 'concurrent_ordl' for multicolumn sets with ordinal encoded entries (nonnegative integer classification)
# 'concurrent_nmbr' for multicolumn sets with numeric entries (signed floats)
# 'exclude' for columns which will be excluded from infill, included in other features' ML infill bases
# returned data should be numerically encoded
# 'boolexclude' boolean integer set suitable for Binary transform but excluded from all infill
# (e.g. NArw entries), included in other features' ML infill bases
# 'ordlexclude' ordinal set excluded from infill (note that in some cases in library
# ordlexclude may return a multi-column set), included in other features' ML infill bases
# 'totalexclude' for complete passthroughs (excl) without datatype conversions, infill,
# excluded from other features' ML infill bases
#___________________________________________________________________________
#Other optional entries for processdict include:
#info_retention, inplace_option, defaultparams, labelctgy,
#defaultinfill, dtype_convert, functionpointer, and noise_transform.
#___________________________________________________________________________
#info_retention: boolean marker associated with an inversion operation that helps inversion prioritize
#transformation paths with full information recovery. (May pass as True when there is no information loss.)
#___________________________________________________________________________
#inplace_option: boolean marker indicating whether a transform supports the inplace parameter received in params.
# When not specified this is assumed as True (which is always valid for the custom_train convention).
# In other words, in dualprocess/singleprocess convention, if your transform does not support inplace,
# need to specify inplace_option as False
#___________________________________________________________________________
#defaultparams: a dictionary recording any default assignparam assignments associated with the category.
# Note that deviations in user specifications to assignparam as part of an automunge(.) call
# take precedence over defaultparams. Note that when applying functionpointer defaultparams
# from the pointer target are also populated when not previously specified.
#___________________________________________________________________________
#defaultinfill: this option serves to specify a default infill
# applied after NArowtype data type casting and preceding the transformation function.
# (defaultinfill is a precursor to ML infill or other infills applied based on assigninfill)
# defaults to 'adjinfill' when not specified, can also pass as one of
# {'adjinfill', 'meaninfill', 'medianinfill', 'modeinfill', 'lcinfill',
# 'interpinfill', 'zeroinfill', 'oneinfill', 'naninfill', 'negzeroinfill'}
# Note that 'meaninfill' and 'medianinfill' only work with numeric data (based on NArowtype).
# Note that for 'datetime' NArowtype, defaultinfill only supports 'adjinfill' or 'naninfill'
# Note that 'naninfill' is intended for cases where user wishes to apply their own default infill
# as part of a custom_train entry
#___________________________________________________________________________
#dtype_convert: this option is intended for the custom_train convention, accepts boolean entries,
# defaults to True when not specified, False turns off a data type conversion
# that is applied after custom_train transformation functions based on MLinfilltype.
# May also be used to deactivate a floatprecision conversion for any category.
# This option primarily included to support special cases and not intended for wide use.
#___________________________________________________________________________
#labelctgy: an optional entry, should be a string entry of a single transformation category
# as entered in the family tree when the category of the processdict entry is used as a root category.
# Used to determine a basis of feature selection for cases where root
# category is applied to a label set resulting in a set returned in multiple configurations.
# Also used in label frequency levelizer.
# Note that since this is only used for small edge case populating a labelctgy entry is optional.
# If one is not assigned, an arbitrary entry will be accessed from the family tree.
# This option primarily included to support special cases.
#___________________________________________________________________________
#functionpointer: A functionpointer entry
# may be entered in lieu of any or all of these other entries **.
# The functionpointer should be populated with a category that has its own processdict entry
# (or a category that has its own process_dict entry internal to the library)
# The functionpointer inspects the pointer target and passes those specifications
# to the origin processdict entry unless previously specified.
# The functionpointer is intended as a shortcut for specifying processdict entries
# that may be helpful in cases where a new entry is very similar to some existing entry.
# (**As the exception labelctgy not accessed from functionpointer
# since it is specific to a root category's family tree.)
#___________________________________________________________________________
#noise_transform: this option serves to specify the noise injection types for noise transforms
# used to support an entropy seeding based on sampling_dict['sampling_type'] specification
# defaults to False when not specified, can also pass as one of
# {'numeric', 'categoric', 'binary', False}
# numeric is for transforms similar to DPnb/DPmm/DPrt which have a binomial and distribution sampling
# categoric is for transforms similar to DPod/DPmc which have a binomial and a choice sampling
# binary is for transforms similar to an alternate DPbn configuration which only have a binomial sampling
# False is for transforms without sampling_dict['sampling_type'] specification support
#___________________________________________________________________________
#Other clarifications:
#Note that NArowtype is associated with transformation inputs
#including for a category's use as a root category and as a tree category
#MLinfilltype is associated with transformation outputs
#for a category's use as a tree category
```
For example, to populate a custom transformation category 'newt' that uses internally defined transformation functions _process_mnmx and _postprocess_mnmx:
```
processdict = {'newt' : {'dualprocess' : am._process_mnmx,
'singleprocess' : None,
'postprocess' : am._postprocess_mnmx,
'NArowtype' : 'numeric',
'MLinfilltype' : 'numeric'}}
```
Note that these processing functions won't be applied when 'newt' is assigned as a root category to a column in assigncat, unless the category is also populated as an entry to one of the associated family tree primitives in the transformdict entry.
Note that all of the processing functions can be omitted or populated with values of None, as may be desired when the category is primarily intended for use as a root category and not a tree category. (If in such case the category is applied as a tree category when accessed no transforms will be applied and no downstream offspring will be inspected when applicable).
Optionally, some additional values can be incorporated into the processdict to
support inversion for a transformation category:
```
#for example
processdict = {'newt' : {'dualprocess' : am._process_mnmx,
'singleprocess' : None,
'postprocess' : am._postprocess_mnmx,
'inverseprocess' : am._inverseprocess_mnmx,
'info_retention' : True,
'NArowtype' : 'numeric',
'MLinfilltype' : 'numeric'}}
#Where 'inverseprocess' is a function to invert the forward pass transformation.
#And 'info_retention' is boolean to signal True when there is full information retention
#in recovered data from inversion.
```
Optionally, a user can set alternate default assignparam parameters to be passed to the associated
transformation functions by including the 'defaultparams' key. These updates to default
parameters will still be overwritten if user manually specifies parameters in assignparam.
```
#for example to default to an alternate noise profile for DPmm
processdict = {'DLmm' : {'dualprocess' : am._process_DPmm,
'singleprocess' : None,
'postprocess' : am._postprocess_DPmm,
'inverseprocess' : am._inverseprocess_UPCS,
'info_retention' : True,
'defaultparams' : {'noisedistribution' : 'laplace'},
'NArowtype' : 'numeric',
'MLinfilltype' : 'numeric'}}
```
Since specification of transformation functions and other processdict entries can be kind of cumbersome in order
to dig out from the codebase naming conventions e.g. for internally defined functions, a
simplification is available when populating a processdict for a user passed entry by
way of the 'functionpointer' entry. When a functionpointer category entry is included,
the transformation functions and other entries that are not already specified are
automatically populated based on entries found in processdict entries of the pointer.
For cases where a functionpointer points to a processdict entry that itself has a functionpointer
entry, chains of pointers are followed until an entry without functionpointer is reached.
defaultparams entries of each pointer link are also accessed for update, and if the prior category
specification contains any redundant defaultparams entries with those found in a pointer target
category the prior category entries take precedence. Similarly for chains of pointers the entries
specified in nearer links take precedence over entries further down the chain.
In other words, if you are populating a new processdict transformation
category and you want the transformation functions and other entries to match an existing category, you
can simply pass the existing category as a functionpointer entry to the new category.
Here is an example if we want to match the DLmm category demonstrated above for a new
category 'newt' but with an alternate 'NArowtype' as an arbitrary example, such as would be useful if we
wanted to define an alternate DLmm family tree in a corresponding newt transformdict entry.
```
processdict = {'newt' : {'functionpointer' : 'DLmm',
'NArowtype' : 'positivenumeric'}}
```
Or an even simpler approach if no overwrites are desired could just be to copy everything.
```
processdict = {'newt' : {'functionpointer' : 'DLmm'}}
```
We can also use functionpointer when overwriting a category defined internal to library. For
example, if we wanted to change the default parameters applied with the mnmx category, we
could overwrite the mnmx process_dict entry such as to match the current entry but with
updated defaultparams.
```
processdict = {'mnmx' : {'functionpointer' : 'mnmx',
'defaultparams' : {'floor' : True}}}
```
Note that processdict entries can be defined to overwrite existing category entries defined in the internal library.
For example, if we wanted our default numerical scaling to be by min-max instead of z-score normalization, one way we could accomplish
this is to overwrite the 'nmbr' transformation functions accessed from processdict, where nmbr is the default root category applied to
numeric sets under automation, whose family tree has nmbr as a tree category entry for accessing the transformation functions.
(Other default root categories under automation are detailed further below in the
"[Default Tranformations](https://github.com/Automunge/AutoMunge#default-transformations)" section.) This approach differs
from overwriting the nmbr transformdict entry as demonstrated above in that the update would be carried through to all instances where nmbr is
accessed as a tree category across the library of family trees.
```
processdict = {'nmbr' : {'functionpointer' : 'mnmx'}}
```
Processing functions following the conventions of those defined internal to the library
can be passed to dualprocess / singleprocess / postprocess / inverseprocess
Or for the greatly simplified conventions available
for custom externally defined transformation functions
can be passed to custom_train / custom_test / custom_inversion.
Demonstrations for custom transformation functions are documented further below in the
section Custom Transformation Functions. (Note that in cases of redundancy, populated
custom_train functions take precedence over the dualprocess / singleprocess conventions).
Note that the defaultinfill option is specific to the custom_train convention and also documented below.
Note that many of the transformation functions in the library have support for distinguishing between
inplace operations vs returning a column copied from the input. Inplace operations are expected to
reduce memory overhead. When not specified the library assumes a function supports the inplace option. Function passed in the custom_train convention automatically support inplace so specification is not required with user defined functions. For functions following the dualprocess/singleprocess conventions, some transforms may not support inplace, in which case a user will need to specify (although if using functionpointer to access the transforms this will be automatic).
```
#for example
processdict = {'newt' : {'dualprocess' : am._process_text,
'singleprocess' : None,
'postprocess' : am._postprocess_text,
'inverseprocess' : am._inverseprocess_text,
'info_retention' : True,
'inplace_option' : False,
'NArowtype' : 'justNaN',
'MLinfilltype' : 'multirt'}}
```
The optional labelctgy specification for a category's processdict entry is intended for use in featureselection when the category is applied as a root category to a label set and the category's family tree returns the labels in multiple configurations. The labelcty entry serves as a specification of a specific primitive entry category either as entered in the upstream primitives of the root category or one of the downstream primitives of subsequent generations, which primitive entry category will serve as the label basis when applying feature selection. (labelctgy is also inspected with oversampling in current implementation.)
Further detail on the processdict data format provided in the essay [Data Structure](https://medium.com/automunge/data-structure-59e52f141dd6).
* evalcat: modularizes the automated evaluation of column properties for assignment
of root transformation categories, allowing user to pass custom functions for this
purpose. Passed functions should follow format:
```
def evalcat(df, column, randomseed, eval_ratio, numbercategoryheuristic, powertransform, labels = False):
"""
#user defined function that takes as input a dataframe df and column id string column
#evaluates the contents of cells and classifies the column for root category of
#transformation (e.g. comparable to categories otherwise assigned in assigncat)
#returns category id as a string
"""
...
return category
```
And could then be passed to automunge function call such as:
```
evalcat = evalcat
```
I recommend using the \_evalcategory function defined in master file as starting point.
(Minus the 'self' parameter since defining external to class.) Note that the
parameters eval_ratio, numbercategoryheuristic, powertransform, and labels are passed as user
parameters in automunge(.) call and only used in \_evalcategory function, so if user wants
to repurpose them totally can do so. (They default to .5, 255, False, False.) Note evalcat
defaults to False to use built-in \_evalcategory function. Note evalcat will only be
applied to columns not assigned in assigncat. (Note that columns assigned to 'eval' / 'ptfm'
in assigncat will be passed to this function for evaluation with powertransform = False / True
respectively.) Note that function currently uses python collections library and datetime as dt.
* ppd_append: defaults to False, accepts as input a prior populated postprocess_dict for
purposes of adding new features to a prior trained model. Basically the intent is that there
are some specialized workflows where models in decision tree paradigms may have new features
incorporated without retraining the model with the prior training data.
In such cases a user may desire to add new features to a prior populated postprocess_dict to enable
pushbutton preprocessing including the original training data basis coupled with basis of newly added features.
In order to do so, automunge(.) should be called with just the new features passed as df_train, and the prior
populated postprocess_dict passed to ppd_append. This will result in the newly populated postprocess_dict being saved
as a new subentry in the returned original postprocess_dict, such that to prepare additional data including the original
features and new features, they combined features can be colletively passed as df_test to postmunge(.) (which should
have new features appended on right side of original features). postmunge(.) will prepare the original features
and new features seperately, including a seperate basis for ML infill, Binary, and etc, and will return a
combined prepared test data. Includes inversion support and support for performing more than one round of new
feature appendings. Note that newly added features are
limited to training features, labels and ID input should be excluded. Note that inversion numpy support not available with
combined features and test feature inversion support is limited to the inversion='test' case. (If it is desired to include
new features in the prior features' ML infill basis and visa versa, instead of applying ppd_append just pass everything
to automunge(.) and populate a new postprocess_dict - noting this might justify retraining the original model due to
a new ML infill basis of original features). (Note that when applied in conjunction with entropy_seeding for noise injection the same seeds will be applied with each set, for sampling_type's other than default we recommend sampling internally with a custom generator as opposed to passing externally sampled seeds.). Please note that ppd_append not supported in conjunction with activating dupl_rows postmunge parameter.
* entropy_seeds: defaults to False, accepts integer or list / flattened array of integers which may serve as supplemental sources of entropy for noise injections with DP transforms, we suggest integers in range {0:(2 \*\* 31 - 1)} to align with int32 dtype. entropy_seeds are specific to an automunge(.) or postmunge(.) call, in other words they are not returned in the populated postprocess_dict. Please note that for determinatino of how many entropy seeds are needed for various sampling_dict['sampling_type'] scenarios, can inspect postprocess_dict['sampling_report_dict'], where if insufficient seeds are available for these scenarios additional seeds will be derived with the extra_seed_generator. Note that the sampling_report_dict will report requirements separately for train and test data and in the bulk_seeds case will have a row count basis. (If not passing test data to automunge(.) the test budget can be omitted.) Note that the entropy seed budget only accounts for preparing one set of data, for the noise_augment option we recommend passing a custom extra_seed_generator with a sampling_type specification, which will result in internal samplings of additional entropy seeds for each additional noise_augment duplicate (or for the bulk_seeds case with external sampling can increased entropy_seed budget proportional to the number of additional duplicates with noise).
* random_generator: defaults to False, accepts numpy.random.Generator formatted random samplers which are applied for noise injections with DP transforms. Note that random_generator may optionally be applied in conjunction with entropy_seeds. When not specified applies numpy.random.PCG64. Examples of alternate generators could be a generator initialized with the [QRAND](https://github.com/pedrorrivero/qrand) library to sample from a quantum circuit. Or if the alternate library does not have numpy.random support, their output can be channeled as entropy_seeds for a similar benefit. random_generator is specific to an automunge(.) or postmunge(.) call, in other words it is not returned in the populated postprocess_dict. Please note that numpy formatted generators of both forms e.g. np.random.PCG64 or np.random.PCG64() may be passed, in the latter case any entropy seeding to this generator will be turned off automatically.
* sampling_dict: defaults to False, accepts a dictionary including possible keys of {sampling_type, seeding_type, sampling_report_dict, stochastic_count_safety_factor, extra_seed_generator, sampling_generator}. sampling_dict is specific to an automunge(.) or postmunge(.) call, in other words they are not returned in the populated postprocess_dict.
- sampling_dict['sampling_type'] accepts a string as one of {'default', 'bulk_seeds', 'sampling_seed', 'transform_seed'}
- default: every sampling receives a common set of entropy_seeds per user specification which are shuffled and passed to each call
- bulk_seeds: every sampling receives a unique supplemental seed for every sampled entry for sampling from sampling_generator (expended seed counts dependent on train/test/both configuration and numbers of rows). This scenario also defaults to sampling_dict['seeding_type'] = 'primary_seeds'
- sampling_seed: every sampling operation receives one supplemental seed for sampling from sampling_generator (expended seed counts dependent on train/test/both configuration)
- transform_seed: every noise transform receives one supplemental seed for sampling from sampling_generator (expended seed counts are the same independant of train/test/both configuration)
- sampling_dict['seeding_type'] defaults to 'supplemental_seeds' or 'primary_seeds' as described below, where 'supplemental_seeds' means that entropy seeds are integrated into np.random.SeedSequence with entropy seeding from the operating system. Also accepts 'primary_seeds', in which user passed entropy seeds are the only source of seeding. Please note that 'primary_seeds' is used as the default for the bulk_seeds sampling_type and 'supplemental_seeds' is used as the default for other sampling_type options.
- sampling_dict['sampling_report_dict'] defaults as False, accepts a prior populated postprocess_dict['sampling_report_dict'] from an automunge(.), call if this is not received it will be generated internally. sampling_report_dict is a resource for determining how many entropy_seeds are needed for various sampling_type scnearios.
- sampling_dict['stochastic_count_safety_factor']: defaults to 0.15, accepts float 0-1, is associated with the bulk_seeds sampling_type case and is used as a multiplier for number of seeds populated for sampling operations with a stochastic number of entries
- sampling_dict['sampling_generator']: used to specify which generator will be used for sampling operations other than generation of additional entropy_seeds. defaults to 'custom' (meaning the passed random_generator or when unspecified the default PCG64), and accepts one of {'custom', 'PCG64', 'MersenneTwister'}
- sampling_dict['extra_seed_generator']: used to specify which generator will be used to sample additional entropy_seeds when more are needed to meet requirements of sampling_report_dict, defaults to 'custom' (meaning the passed random_generator or when unspecified the default PCG64), and accepts one of {'custom', 'PCG64', 'MersenneTwister', 'off', 'sampling_generator'}, where sampling_generator matches specification for sampling_generator, and 'off' turns off sampling of additional entropy seeds.
* privacy_encode: a boolean marker _{True, False, 'private'}_ defaults to False. For cases where sets
are returned as pandas dataframe, a user may desire privacy preserving encodings in which
column headers of received data are anonymized. This parameter when activated as True shuffles the order of columns and
replaces headers and suffixes with integers. ID sets are not anonymized. Label sets are only anonymized in the 'private' scenario. Note that conversion information is available in returned postprocess_dict under
privacy reports (in other words, privacy can be circumvented if user has access to an unencrypted postprocess_dict).
When activated the postprocess_dict returned columntype_report captures the privacy encodings and the column_map is erased.
Note that when activated consistent convention is applied in postmunge and inversion is supported.
When privacy_encode is activated postmunge(.) printstatus is only available as False or 'silent'.
The 'private' option also activates shuffling of rows in train and test data for both automunge(.) and postmunge(.)
and resets the dataframe indexes (although retains the Automunge_index column returned in the ID set).
Thus prepared data in the 'private' option can be kept row-wise anonymous by not sharing the returned ID set.
We recommend considering use of the encrypt_key parameter in conjunction with privacy_encode. Please note that when
privacy_encode is activated postmunge options for featureeval and driftreport are not available to avoid data leakage channel.
It may be beneficial in privacy sensitive applications to inject noise via DP transforms and apply distribution conversions to
numeric features e.g. via DPqt or DPbx. Further detail on privacy encoding provided in the essay [Private Encodings with Automunge](https://medium.com/automunge/private-encodings-with-automunge-f73dcdb57289).
* encrypt_key: as one of {False, 16, 24, 32, bytes} (where bytes means a bytes type object with length of 16, 24, or 32) defaults to False, other scenarios all result in an encryption of the returned postprocess_dict. 16, 24, and 32 refer to the block size, where block size of 16 aligns with 128 bit encryption, 32 aligns with 256 bit. When encrypt_key is passed as an integer, a returned encrypt_key is derived and returned in the closing printouts. This returned printout should be copied and saved for use with the postmunge(.) encrypt_key parameter. In other words, without this encryption key, user will not be able to prepare additional data in postmunge(.) with the returned postprocess_dict. When encrypt_key is passed as a bytes object (of length 16, 24, or 32), it is treated as a user specified encryption key and not returned in printouts. When data is encrypted, the postprocess_dict returned from automunge(.) is still a dictionary that can be downloaded and uploaded with pickle, and based on which scenario was selected by the privacy_encode parameter (for scenarios other than 'private'), the returned postprocess_dict will contain some public entries that are not encrypted, such as ['columntype_report', 'label_columntype_report', 'privacy_encode', 'automungeversion', 'labelsencoding_dict', 'FS_sorted', 'column_map', 'sampling_report_dict'] - where FS_sorted and column_map are ommitted when privacy_encode is not False and all public entries are omitted when privacy_encode = 'private'. The encryption key, as either returned in printouts or based on user specification, can then be passed to the postmunge(.) encrypt_key parameter to prepare additional data. The only postmunge operation available without the encryption key is for label inverison (unless privacy_encode is 'private'). Thus privacy_encode may be fully private, and a user with access to the returned postprocess_dict will not be able to invert training data without the encryption key. Please note that the AES encryption is applied with the [pycrypto](https://github.com/pycrypto/pycrypto) python library which requires installation in order to run (we found there were installations available via conda install).
* printstatus: user can pass _True/False/'summary'/'silent'_ indicating whether the function will print
status of processing during operation. Defaults to 'summary' to return a summary of returned sets and any feature importance or drift reports. True returns all printouts. When False only error
message printouts generated. When 'summary' only reports and summary are printed. When 'silent' no printouts are generated. Note that all of these scenarios are also available by the logger parameter regardless of printstatus setting.
* logger: user can initialize a dictionary externally, e.g. logger={}, and pass it to this parameter, e.g. logger=logger. automunge(.) will then log every printout scenario and validation result as they are being accessed in this external dictionary, which can then either be inspected for troubleshooting in cases of a halt scenario or archived. The report scenarios are loosely aligned with python logging module and also related to the tiers of printstatus.
```
logger = {}
train, train_ID, labels, \
val, val_ID, val_labels, \
test, test_ID, test_labels, \
postprocess_dict = \
am.automunge(df_train,
logger=logger,
printstatus='silent')
#and then, e.g.
print(logger['debug_report'])
print(logger['info_report'])
print(logger['warning_report'])
#or validation results available in logger['validations']
```
Ok well we'll demonstrate further below how to build custom transformation functions,
for now you should have sufficient tools to build sets of transformation categories
using the family tree primitives and etc.
...
# postmunge(.)
The postmunge(.) function is intended to consistently prepare subsequently available
and consistently formatted train or test data with just a single function call. It
requires passing the postprocess_dict object returned from the original application
of automunge and that the passed test data have consistent column header labeling as
the original train set (or for Numpy arrays consistent order of columns). Processing
data with postmunge(.) is considerably more efficient than automunge(.) since it does
not require the overhead of the evaluation methods, the derivation of transformation
normalization parameters, and/or the training of models for ML infill.
```
#for postmunge(.) function to prepare subsequently available data
#using the postprocess_dict object returned from original automunge(.) application
#Remember to initialize automunge
from Automunge import *
am = AutoMunge()
#Then we can run postmunge function as:
test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict, df_test,
testID_column = False,
pandasoutput = 'dataframe', printstatus = 'summary', inplace = False,
dupl_rows = False, TrainLabelFreqLevel = False,
featureeval = False, traindata = False, noise_augment = 0,
driftreport = False, inversion = False,
returnedsets = True, shuffletrain = False,
entropy_seeds = False, random_generator = False, sampling_dict = False,
randomseed = False, encrypt_key = False, logger = {})
```
Or to run postmunge(.) with default parameters we simply need the postprocess_dict
object returned from the corresponding automunge(.) call and a consistently formatted
additional data set.
```
test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict, df_test)
```
## postmunge(.) returned sets:
Here now are descriptions for the returned sets from postmunge, which
will be followed by descriptions of the parameters which can be passed to
the function. Default is that returned sets are pandas dataframes, with
single column sets returned as pandas series.
For dataframes, data types of returned columns are based on the transformation applied,
for example columns with boolean integers are cast as int8, ordinal encoded
columns are given a conditional type based on the size of encoding space as either
uint8, uint16, or uint32. Continuous sets are cast as float16, float32, or float64
based on the automunge(.) floatprecision parameter. And direct passthrough columns
via excl transform retain the received data type.
* test: the set of features, consistently encoded and normalized as the
training data, that can be used to generate predictions from a model
trained with the train set from automunge.
* test_ID: the set of ID values corresponding to the test set. Also included
in this set is a derived column titled 'Automunge_index',
this column serves as an index identifier for order of rows as they were
received in passed data, such as may be beneficial when data is shuffled.
For more information please refer to writeup for the testID_column parameter.
If the received df_test had a non-ranged integer index,
it is extracted and returned in this set.
* test_labels: a set of numerically encoded labels corresponding to the
test set if a label column was passed. Note that the function
assumes the label column is originally included in the train set. Note
that if the labels set is a single column a returned dataframe is flattened
to a pandas Series or a returned Numpy array is also
flattened (e.g. [[1,2,3]] converted to [1,2,3] ).
* postreports_dict: a dictionary containing entries for following:
- postreports_dict['featureimportance']: results of optional feature
importance evaluation based on parameter featureeval. (See automunge(.)
notes above for feature importance printout methods.)
- postreports_dict['finalcolumns_test']: list of columns returned from
postmunge
- postreports_dict['driftreport']: results of optional drift report
evaluation tracking properties of postmunge data in comparison to the
original data from automunge call associated with the postprocess_dict
presumably used to train a model. Results aggregated by entries for the
original (pre-transform) list of columns, and include the normalization
parameters from the automunge call saved in postprocess_dict as well
as the corresponding parameters from the new data consistently derived
in postmunge
- postreports_dict['sourcecolumn_drift']: results of optional drift report
evaluation tracking properties of postmunge data derived from source
columns in comparison to the original data from automunge(.) call associated
with the postprocess_dict presumably used to train a model.
- postreports_dict['pm_miscparameters_results']: reporting results of validation tests performed on parameters and passed data
```
#the results of a postmunge driftreport assessment are returned in the postreports_dict
#object returned from a postmunge call, as follows:
postreports_dict = \
{'featureimportance':{(not shown here for brevity)},
'finalcolumns_test':[(derivedcolumns)],
'driftreport': {(sourcecolumn) : {'origreturnedcolumns_list':[(derivedcolumns)],
'newreturnedcolumns_list':[(derivedcolumns)],
'drift_category':(category),
'orignotinnew': {(derivedcolumn):{'orignormparam':{(stats)}},
'newnotinorig': {(derivedcolumn):{'newnormparam':{(stats)}},
'newreturnedcolumn':{(derivedcolumn):{'orignormparam':{(stats)},
'newnormparam':{(stats)}}}},
'rowcount_basis': {'automunge_train_rowcount':#, 'postmunge_test_rowcount':#},
'sourcecolumn_drift': {'orig_driftstats': {(sourcecolumn) : (stats)},
'new_driftstats' : {(sourcecolumn) : (stats)}}}
#the driftreport stats for derived columns are based on the normalization_dict entries from the
#corresponding processing function associated with that column's derivation
#here is an example of source column drift assessment statistics for a positive numeric root category:
postreports_dict['sourcecolumn_drift']['new_driftstats'] = \
{(sourcecolumn) : {'max' : (stat),
'quantile_99' : (stat),
'quantile_90' : (stat),
'quantile_66' : (stat),
'median' : (stat),
'quantile_33' : (stat),
'quantile_10' : (stat),
'quantile_01' : (stat),
'min' : (stat),
'mean' : (stat),
'std' : (stat),
'MAD' : (stat),
'skew' : (stat),
'shapiro_W' : (stat),
'shapiro_p' : (stat),
'nonpositive_ratio' : (stat),
'nan_ratio' : (stat)}}
```
...
## postmunge(.) passed parameters
```
#for postmunge(.) function on subsequently available test data
#using the postprocess_dict object returned from original automunge(.) application
#Remember to initialize automunge
from Automunge import *
am = AutoMunge()
#Then we can run postmunge function as:
test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict, df_test,
testID_column = False,
pandasoutput = 'dataframe', printstatus = 'summary', inplace = False,
dupl_rows = False, TrainLabelFreqLevel = False,
featureeval = False, traindata = False, noise_augment = 0,
driftreport = False, inversion = False,
returnedsets = True, shuffletrain = False,
entropy_seeds = False, random_generator = False, sampling_dict = False,
randomseed = False, encrypt_key = False, logger = {})
```
* postprocess_dict: this is the dictionary returned from the initial
application of automunge(.) which included normalization parameters to
facilitate consistent processing of additional train or test data to the
original processing of the train set. This requires a user to remember
to download the dictionary at the original application of automunge,
otherwise if this dictionary is not available a user can feed this
subsequent test data to the automunge along with the original train data
exactly as was used in the original automunge(.) call.
* df_test: a pandas dataframe or numpy array containing a structured
dataset intended for use to generate predictions from a machine learning
model trained from the automunge returned sets. The set must be consistently
formatted as the train set with consistent order of columns and if labels are
included consistent labels. If desired the set may include an ID column. The
tool supports the inclusion of non-index-range column as index or multicolumn
index (requires named index columns). Such index types are added to the
returned "ID" sets which are consistently shuffled and partitioned as the
train and test sets. If numpy array passed any ID columns from train set should
be included. Note that if a label column is included consistent with label column from
automunge(.) call it will be automatically applied as label and similarly for ID columns.
If desired can also be passed as a dataframe with only the label columns and features ommitted.
* testID_column: defaults to False, user can pass a column header or list of column headers
for columns that are to be segregated from the df_test set for return in the test_ID
set (consistently shuffled and partitioned when applicable). For example this may
be desired for an index column or any other column that the user wishes to exclude from
the ML infill basis. Defaults to False, which can be used for cases where the df_test
set does not contain any ID columns, or may also be passed as the default of False when
the df_test ID columns match those passed to automunge(.) in the trainID_column parameter,
in which case they are automatically given comparable treatment. Thus, the primary intended use
of the postmunge(.) testID_column parameter is for cases where a df_test has ID columns
different from those passed with df_train in automunge(.). Note that an integer column index
or list of integer column indexes may also be passed such as if the source dataset was a numpy array.
(In general though when passing data as numpy arrays we recommend matching ID columns to df_train.) In cases of unnamed
non-range integer indexes, they are automatically extracted and returned in the ID sets as 'Orig_index'.
If a user would like to include a column both in the features for encoding and the ID sets for original form
retention, they can pass testID_column as a list of two lists, e.g. [list1, list2], where the first
list may include ID columns to be struck from the features and the second list may include ID columns
to be retained in the features. (We recommend only using testID_column specification for cases where df_test
includes columns that weren't present in the original df_train, otehrwise it is automatic.)
* pandasoutput: selects format of returned sets. Defaults to _'dataframe'_
for returned pandas dataframe for all sets. Dataframes index is not always preserved, non-integer indexes are extracted to the ID sets,
and automunge(.) generates an application specific range integer index in ID sets
corresponding to the order of rows as they were passed to function). If set to _True_, features and ID sets are comparable, and single column label sets are converted to Pandas Series instead of dataframe. If set to _False_
returns numpy arrays instead of dataframes. Note that the dataframes will have column
specific data types, or returned numpy arrays will have a single data type.
* printstatus: user can pass _True/False/'summary'/'silent'_ indicating whether the function will print
status of processing during operation. Defaults to 'summary' to return a summary of returned sets and any feature importance or drift reports. True returns all printouts. When False only error
message printouts generated. When 'summary' only reports and summary are printed. When 'silent' no printouts are generated.
* inplace: defaults to False, when True the df_test passed to postmunge(.)
is overwritten with the returned test set. This reduces memory overhead.
For example, to take advantage with reduced memory overhead you could call postmunge(.) as:
```
df_test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict, df_test, inplace = True)
```
* dupl_rows: can be passed as _(True/False\)_ which indicates
if duplicate rows will be consolidated to single instance in returned sets. (In
other words, if same row included more than once, it will only be returned once.)
Defaults to False for not activated. True applies consolidation to test set. Note
this is applied prior to TrainLabelFreqLevel if elected. As implemented this does
not take into account duplicate rows in test data which have different labels,
only one version of features/label pair is returned. Please note dupl_rows option
not recommended in cases where automunge(.) applied the ppd_append option
and will return a printout and validation result as dupl_rows_ppd_append_postmunge_valresult.
* TrainLabelFreqLevel: a boolean identifier _(True/False)_ which indicates
if the TrainLabelFreqLevel method will be applied to oversample test
data associated with underrepresented labels. The method adds multiples
to test data rows for those labels with lower frequency resulting in
an (approximately) levelized frequency. This defaults to False. Note that
this feature may be applied to numerical label sets if the assigncat processing
applied to the set in automunge(.) had included aggregated bins, such
as for example 'exc3' for pass-through numeric with standard deviation bins,
or 'exc4' for pass-through numeric with powers of ten bins. Note this
method requires the inclusion of a designated label column. Further detail
on oversampling provided in the essay [Oversampling with Automunge](https://medium.com/automunge/oversampling-with-automunge-3e69e500a32e).
* featureeval: a boolean identifier _(True/False)_ to activate a feature
importance evaluation, comparable to one performed in automunge but based on the
test set passed to postmunge. Defaults to False. The results are returned in the
postreports_dict object returned from postmunge as postreports_dict['featureimportance'].
The results will also be printed out if printstatus is activated. Note that sorted
feature importance results are returned in postreports_dict['FS_sorted'], including
columns sorted by metric and metric2. Relies on ML_cmnd parameters from original
automunge(.) call.
* driftreport: defaults to False, accepts one of {False, True, 'efficient', 'report_effic', 'report_full'}.
Activates a drift report evaluation, in which drift statistics are collected
for comparison between features in the train data that was passed to automunge(.) verses test data
passed to postmunge(.). May include drift statistics associated with the raw data found
in the input features, and may also include drift statistics associated with the returned
data derived features as collected during derivations and recorded in the normalization
parameters of a transformation. The results are returned in the
postreports_dict object returned from postmunge as postreports_dict['driftreport'] and postreports_dict['sourcecolumn_drift'].
Additional drift statistics for columns returned from a PCA or Binary dimensionality reduction are
available in conjunction with the driftreport = True scenario, which are returned in postreports_dict['dimensionality_reduction_driftstats'].
The results will also be printed out if printstatus is activated. Defaults to _False_, and:
- _False_ means no postmunge drift assessment is performed
- _True_ means an assessment is performed for both the source column and derived column
stats
- _'efficient'_ means that a postmunge drift assessment is only performed on the source
columns (less information but better latency / computational efficiency)
- _'report_effic'_ means that the efficient assessment is performed (only source column stats) and returned with
no processing of data
- _'report_full'_ means that the full assessment is performed for both the source column and derived column
and returned with no processing of data
Note that for transforms returning multi column sets, the drift stats will only be reported for first
column in the categorylist. Note that driftreport is not available in conjunction with privacy encoding.
Further detail on drift reports are provided in the essay [Drift Reporting with Automunge](https://medium.com/automunge/drift-reporting-with-automunge-6a83eecbb253).
* inversion: defaults to False, may be passed as one of {False, 'test', 'labels', 'denselabels', a list, or a set},
where ‘test’ or ‘labels’ activate an inversion operation to recover, by a set of transformations
mirroring the inversion of those applied in automunge(.), the form of test data or labels
data to consistency with the source columns as were originally passed to automunge(.). As further clarification,
passing inversion='test' should be in conjunction with passing df_test = test (where test is a dataframe of train
or test data returned from an automunge or postmunge call), and passing inversion='labels' should be in conjunction
with passing df_test = test_labels (where test_labels is a dataframe of labels or test_labels returned from an
automunge or postmunge call). When inversion is passed as a list, accepts list of source column or returned column
headers for inversion targets. When inversion is passed as a set, accepts a set with single entry of a returned
column header serving as a custom target for the inversion path. (inversion list or set specification not supported when the automunge(.) privacy_encode option was activated.) 'denselabels' is for label set inversion in which
labels were prepared in multiple formats, such as to recover the original form on each basis for comparison (currently supported for single labels_column case).
The inversion operation is supported by the optional process_dict entry 'info_retention' and required for inversion process_dict entry
'inverseprocess' (or 'custom_inversion'). Note that columns are only recovered for those sets in which a path of
inversion was available by these processdict entries. Note that the path of
inversion is prioritized to those returned sets with information retention and availability
of inverseprocess functions. Note that both feature importance and Binary dimensionality
reduction is supported, support is not expected for PCA. Note that recovery of label
sets with label smoothing is supported. Note that during an inversion operation the
postmunge function only considers the parameters postprocess_dict, df_test, inversion,
pandasoutput, and/or printstatus. Note that in an inversion operation the
postmunge(.) function returns three sets: a recovered set, a list of recovered columns, and
a dictionary logging results of the path selection process and validation results. Please note that the general
convention in library is that entries not successfully recovered from inversion may be recorded
corresponding to the imputation value from the forward pass, NaN, or some other transformation function specific convention. Further
details on inversion is provided in the essay [Announcing Automunge Inversion](https://medium.com/automunge/announcing-automunge-inversion-18226956dc).
Here is an example of a postmunge call with inversion.
```
df_invert, recovered_list, inversion_info_dict = \
am.postmunge(postprocess_dict, test_labels, inversion='labels',
pandasoutput=True, printstatus='summary', encrypt_key = False)
```
Here is an example of a process_dict entry with the optional inversion entries included, such
as may be defined by user for custom functions and passed to automunge(.) in the processdict
parameter:
```
process_dict.update({'mnmx' : {'dualprocess' : self.process_mnmx,
'singleprocess' : None,
'postprocess' : self.postprocess_mnmx,
'inverseprocess' : self.inverseprocess_mnmx,
'info_retention' : True,
'NArowtype' : 'numeric',
'MLinfilltype' : 'numeric',
'labelctgy' : 'mnmx'}})
```
* traindata: boolean _{True, False, 'train_no_noise', 'test_no_noise'}_, defaults to False. Only inspected when a transformation
is called that treats train data different than test data (currently only relevant to
DP family of transforms for noise injection to train sets or label smoothing transforms in smth family). When passed
as True treats df_test as a train set for purposes of these specific transforms, otherwise
default of False treats df_test as a test set (which turns off noise injection for DP transforms). As you would expect, 'train_no_noise' and 'test_no_noise' designates data passed to postmunge(.) as train or test data but turns off noise injections.
* noise_augment: accepts type int or float(int) >=0. Defaults to 0. Used to specify
a count of additional duplicates of test data prepared and concatenated with the
original test set. Intended for use in conjunction with noise injection, such that
the increased size of training corpus can be a form of data augmentation.
Takes into account the traindata parameter passed to postmunge(.) for
distinguishing whether to treat the duplicates as train or test data for purposes of noise injections.
Note that injected noise will be uniquely randomly sampled with each duplicate. When noise_augment
is received as a dtype of int, one of the duplicates will be prepared without noise. When
noise_augment is received as a dtype of float(int), all of the duplicates will be prepared
with noise. When shuffletrain is activated the duplicates are collectively shuffled, and can distinguish
between duplicates by the original df_test.shape in comparison to the ID set's Automunge_index.
Please be aware that with large dataframes a large duplicate count may run into memory constraints,
in which case additional duplicates can be prepared in additional postmunge(.) calls. Note that the entropy seed budget only accounts for preparing one set of data, for the noise_augment option with entropy seeding we recommend passing a custom extra_seed_generator with a sampling_type specification, which will result in internal samplings of additional entropy seeds for each additional noise_augment duplicate (or for the bulk_seeds case with external sampling can increase entropy_seed budget proportional to the number of additional duplicates with noise).
* returnedsets: Can be passed as one of _{True, False, 'test_ID', 'test_labels', 'test_ID_labels'}_.
Designates the composition of the sets returned
from a postmunge(.) call. Defaults to True for the full composition of five returned sets.
With other options postmunge(.) only returns a single set, where for False that set consists
of the test set, or for the other options returns the test set concatenated with the ID,
labels, or both. For example:
```
#in default of returnedsets=True, postmunge(.) returns five sets, such as this call:
test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict, df_test, returnedsets = True)
#for other returnedset options, postmunge(.) returns just a single set, the test set:
test = \
am.postmunge(postprocess_dict, df_test, returnedsets = False)
#Note that if you want to access the column labels for an appended ID or labels set,
#They can be accessed in the postprocess_dict under entries for
postprocess_dict['finalcolumns_labels']
postprocess_dict['finalcolumns_trainID']
```
* shuffletrain: can be passed as one of _{True, False}_ which indicates if the rows in
the returned sets will be (consistently) shuffled. This value defaults to False.
* entropy_seeds: defaults to False, accepts integer or list / flattened array of integers which may serve as supplemental sources of entropy for noise injections with DP transforms, we suggest integers in range {0:(2 \*\* 31 - 1)} to align with int32 dtype. entropy_seeds are specific to an automunge(.) or postmunge(.) call, in other words they are not returned in the populated postprocess_dict. Please note that for determinatino of how many entropy seeds are needed for various sampling_dict['sampling_type'] scenarios, can inspect postprocess_dict['sampling_report_dict'], where if insufficient seeds are available for these scenarios additional seeds will be derived with the extra_seed_generator. Note that the sampling_report_dict will report requirements separately for train and test data and in the bulk_seeds case will have a row count basis. (If not passing test data to automunge(.) the test budget can be omitted.) Note that the entropy seed budget only accounts for preparing one set of data, for the noise_augment option we recommend passing a custom extra_seed_generator with a sampling_type specification, which will result in internal samplings of additional entropy seeds for each additional noise_augment duplicate (or for the bulk_seeds case with external sampling can increased entropy_seed budget proportional to the number of additional duplicates with noise).
* random_generator: defaults to False, accepts numpy.random.Generator formatted random samplers which are applied for noise injections with DP transforms. Note that random_generator may optionally be applied in conjunction with entropy_seeds. When not specified applies numpy.random.PCG64. Examples of alternate generators could be a generator initialized with the [QRAND](https://github.com/pedrorrivero/qrand) library to sample from a quantum circuit. Or if the alternate library does not have numpy.random support, their output can be channeled as entropy_seeds for a similar benefit. random_generator is specific to an automunge(.) or postmunge(.) call, in other words it is not returned in the populated postprocess_dict. Please note that numpy formatted generators of both forms e.g. np.random.PCG64 or np.random.PCG64() may be passed, in the latter case any entropy seeding to this generator will be turned off automatically.
* sampling_dict: defaults to False, accepts a dictionary including possible keys of {sampling_type, seeding_type, sampling_report_dict, stochastic_count_safety_factor, extra_seed_generator, sampling_generator}. sampling_dict is specific to an automunge(.) or postmunge(.) call, in other words they are not returned in the populated postprocess_dict.
- sampling_dict['sampling_type'] accepts a string as one of {'default', 'bulk_seeds', 'sampling_seed', 'transform_seed'}
- default: every sampling receives a common set of entropy_seeds per user specification which are shuffled and passed to each call
- bulk_seeds: every sampling receives a unique supplemental seed for every sampled entry for sampling from sampling_generator (expended seed counts dependent on train/test/both configuration and numbers of rows). This scenario also defaults to sampling_dict['seeding_type'] = 'primary_seeds'
- sampling_seed: every sampling operation receives one supplemental seed for sampling from sampling_generator (expended seed counts dependent on train/test/both configuration)
- transform_seed: every noise transform receives one supplemental seed for sampling from sampling_generator (expended seed counts are the same independant of train/test/both configuration)
- sampling_dict['seeding_type'] defaults to 'supplemental_seeds' or 'primary_seeds' as described below, where 'supplemental_seeds' means that entropy seeds are integrated into np.random.SeedSequence with entropy seeding from the operating system. Also accepts 'primary_seeds', in which user passed entropy seeds are the only source of seeding. Please note that 'primary_seeds' is used as the default for the bulk_seeds sampling_type and 'supplemental_seeds' is used as the default for other sampling_type options.
- sampling_dict['sampling_report_dict'] defaults as False, accepts a prior populated postprocess_dict['sampling_report_dict'] from an automunge(.), call if this is not received it will be generated internally. sampling_report_dict is a resource for determining how many entropy_seeds are needed for various sampling_type scnearios.
- sampling_dict['stochastic_count_safety_factor']: defaults to 0.15, accepts float 0-1, is associated with the bulk_seeds sampling_type case and is used as a multiplier for number of seeds populated for sampling operations with a stochastic number of entries
- sampling_dict['sampling_generator']: used to specify which generator will be used for sampling operations other than generation of additional entropy_seeds. defaults to 'custom' (meaning the passed random_generator or when unspecified the default PCG64), and accepts one of {'custom', 'PCG64', 'MersenneTwister'}
- sampling_dict['extra_seed_generator']: used to specify which generator will be used to sample additional entropy_seeds when more are needed to meet requirements of sampling_report_dict, defaults to 'custom' (meaning the passed random_generator or when unspecified the default PCG64), and accepts one of {'custom', 'PCG64', 'MersenneTwister', 'off', 'sampling_generator'}, where sampling_generator matches specification for sampling_generator, and 'off' turns off sampling of additional entropy seeds.
* randomseed: defaults as False, also accepts integers within 0:2\*\*31-1. When not specified, randomseed is based on a uniform randomly sampled integer within that range using an entropy_seeds when available.
This value is used as the postmunge(.) seed of randomness for operations that don't require matched random seeding to automunge(.).
* encrypt_key: when the postprocess_dict was encrypted by way of the corresponding automunge(.) encrypt_key parameter, a key is either derived and returned in the closing automunge(.) printouts, or a key is based on user specification. To prepare additional data in postmunge(.) with the encrypted postprocess_dict requires passing that key to the postmunge(.) encrypt_key parameter. Defaults to False for when encryption was not performed, other accepts a bytes type object with expected length of 16, 24, or 32. Please note that the AES encryption is applied with the [pycrypto](https://github.com/pycrypto/pycrypto) python library which requires installation in order to run (we found there were installations available via conda install).
* logger: user can initialize a dictionary externally (e.g. logger={}) and then pass it to this parameter (e.g. logger=logger). postmunge(.) will then log every printout scenario and validation result as they are being accessed in this external dictionary, which can then either be inspected for troubleshooting in cases of a halt scenario or archived. The report scenarios are loosely aligned with python logging module and also related to the tiers of printstatus.
```
logger = {}
test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict,
df_test,
logger=logger,
printstatus='silent')
#and then, e.g.
print(logger['debug_report'])
print(logger['info_report'])
print(logger['warning_report'])
#or validation results available in logger['validations']
```
## Default Transformations
When root categories of transformations are not assigned for a given column in
assigncat, automunge performs an evaluation of data properties to infer
appropriate means of feature engineering and numerical encoding. The default
categories of transformations are as follows:
- nmbr: for numeric data, columns are treated with z-score normalization. If
binstransform parameter was activated this will be supplemented by a collection
of bins indicating number of standard deviations from the mean. Note that default infill
performed prior to ML infill is imputation with negative zero. The exception is for
numeric data received in a column with pandas 'categoric' data type, which are instead binarized
consistent to categoric sets (as 1010 or bnry). Note that numerical sets with 2 unique values in train
set default to bnry. Note that features with majority str(int/float) entries are also treated as numeric.
- 1010: for categorical data excluding special cases described following, columns are
subject to binarization encoding via '1010' (e.g. for majority str or bytes type entries). If the
number of unique entries in the column exceeds the parameter 'numbercategoryheuristic'
(which defaults to 255), the encoding will instead be by hashing. Note that for default
infill missing data has a distinct representation in the encoding space. Note that features with
majority str(int/float) entries are treated as numeric.
- bnry: for categorical data of <=2 unique values excluding infill (e.g. NaN), the
column is encoded to 0/1. Note that numerical sets with 2 unique values in train
set also default to bnry.
- hsh2: for categorical data, if the number of unique entries in the column exceeds
the parameter 'numbercategoryheuristic' (which defaults to 255), the encoding will
instead be by 'hsh2' which is an ordinal (integer) encoding based on hashing.
hsh2 is excluded from ML infill.
- hash: for all unique entry categoric sets (based on sets with >75% unique entries),
the encoding will be by hash which extracts distinct words within entries returned in
a set of columns with an integer hashing. hash is excluded from ML infill. Note that for edge
cases with large string entries resulting in too high dimensionality, the max_column_count
parameter can be passed to default_assignparam in assignparam to put a cap on returned column count.
- dat6: for time-series data, a set of derivations are performed returning
'year', 'mdsn', 'mdcs', 'hmss', 'hmsc', 'bshr', 'wkdy', 'hldy' (these are defined
in next section)
- null: for columns without any valid values in training set (e.g. all NaN) column is deleted
For label sets, we use a distinct set of root categories under automation. These are in
some cases comparable to those listed above for training data, but differ in that the label
sets will not include a returned 'NArw' (infill marker) even when parameter NArw_marker
passed as True.
- lbnb: for numerical data, a label set is treated with an 'nmbr' z-score normalization.
- lbor: for categoric data of >2 unique values, a label set is treated with an ordinal encoding similar to 'ord3' ordinal encoding (frequency sorted order of encodings). lbor differs from ord3 in that missing data does not receive a distinct encoding and is instead grouped into the 0 activation (consistent with the ord3 parameter setting null_activation=False).
- lbbn: for categoric data of <3 unique values, a label set is treated with an 'bnry' binary encoding (single column binary), also applied to numeric sets with 2 unique values
Other label categories are available for assignment in assigncat, described below in the
library of transforms section for label set encodings.
Note that if a user wishes to avoid the automated assignment of default transformations,
such as to leave those columns not specifically assigned to transformation categories in
assigncat as unchanged, the powertransform parameter may be passed as values 'excl' or
'exc2', where for 'excl' columns not explicitly assigned to a root category in assigncat
will be left untouched, or for 'exc2' columns not explicitly assigned to a root category
in assigncat will be forced to numeric and subject to default modeinfill. (These two excl
arguments may be useful if a user wants to experiment with specific transforms on a
subset of the columns without incurring processing time of an entire set.) This option may
interfere with ML infill if data is not all numerically encoded.
If the data is already numerically encoded with NaN entries for missing data, ML infill
can be applied without further preprocessing transformations by passing powertransform = 'infill'.
Note that for columns designated for label sets as a special case categorical data will
default to 'ordl' (ordinal encoding) instead of '1010'. Also, numerical data will default
to 'excl2' (pass-through) instead of 'nmbr'.
- powertransform: if the powertransform parameter is activated, a statistical evaluation
will be performed on numerical sets to distinguish between columns to be subject to
bxcx, nmbr, or mnmx. Please note that we intend to further refine the specifics of this
process in future implementations. Additionally, powertransform may be passed as values 'excl'
or 'exc2', where for 'excl' columns not explicitly assigned to a root category in assigncat
will be left untouched, or for 'exc2' columns not explicitly assigned to a root category in
assigncat will be forced to numeric and subject to default modeinfill. (These two excl
arguments may be useful if a user wants to experiment with specific transforms on a subset of
the columns without incurring processing time of an entire set for instance.) To default to
noise injection to numeric and (non-hashed) categoric, can apply 'DP1' or 'DP2', (or 'DT1','DT2', 'DB1', 'DB2').
- floatprecision: parameter indicates the precision of floats in returned sets (16/32/64)
such as for memory considerations.
In all cases, if the parameter NArw_marker is activated returned sets will be
supplemented with a NArw column indicating rows that were subject to infill. Each
transformation category has a default infill approach detailed below.
Note that default transformations can be overwritten within an automunge(.) call by way
of passing custom transformdict family tree definitions which overwrite the family tree
of the default root categories listed above. For instance, if a user wishes to process
numerical columns with a default mean scaling ('mean') instead of z-score
normalization ('nmbr'), the user may copy the transform_dict entries from the code-base
for 'mean' root category and assign as a definition of the 'nmbr' root category, and then
pass that defined transformdict in the automunge call. (Note that we don't need to
overwrite the processdict for nmbr if we don't intend to overwrite its use as an entry
in other root category family trees. Also it is good practice to retain any downstream
entries such as in case the default for nmbr is used as an entry in some other root
category's family tree.) Here's a demonstration.
```
#create a transformdict that overwrites the root category definition of nmbr with mean:
#(assumes that we want to include NArw indicating presence of infill)
transformdict = {'nmbr' : {'parents' : [],
'siblings': [],
'auntsuncles' : ['mean'],
'cousins' : ['NArw'],
'children' : [],
'niecesnephews' : [],
'coworkers' : [],
'friends' : []}}
#And then we can simply pass this transformdict to an automunge(.) call.
train, train_ID, labels, \
val, val_ID, val_labels, \
test, test_ID, test_labels, \
postprocess_dict = \
am.automunge(df_train,
transformdict = transformdict)
```
Note if any of default transformation automation categories (nmbr/1010/ord3/text/bnry/dat6/null)
are overwritten in this fashion, a user can still assign original default categories to distinct
columns in assigncat by using corresponding alternates of (nmbd/101d/ordd/texd/bnrd/datd/nuld).
...
## Library of Transformations
### Library of Transformations Subheadings:
* [Intro](https://github.com/Automunge/AutoMunge/blob/master/README.md#intro)
* [Label Set Encodings](https://github.com/Automunge/AutoMunge/blob/master/README.md#label-set-encodings)
* [Numeric Set Normalizations](https://github.com/Automunge/AutoMunge/blob/master/README.md#numeric-set-normalizations)
* [Numeric Set Transformations](https://github.com/Automunge/AutoMunge/blob/master/README.md#numeric-set-transformations)
* [Numeric Set Bins and Grainings](https://github.com/Automunge/AutoMunge/blob/master/README.md#numeric-set-bins-and-grainings)
* [Sequential Numerical Set Transformations](https://github.com/Automunge/AutoMunge/blob/master/README.md#sequential-numerical-set-transformations)
* [Categorical Set Encodings](https://github.com/Automunge/AutoMunge/blob/master/README.md#categorical-set-encodings)
* [Date-Time Data Normalizations](https://github.com/Automunge/AutoMunge/blob/master/README.md#date-time-data-normalizations)
* [Date-Time Data Bins](https://github.com/Automunge/AutoMunge/blob/master/README.md#date-time-data-bins)
* [Differential Privacy Noise Injections](https://github.com/Automunge/AutoMunge/blob/master/README.md#differential-privacy-noise-injections)
* [Misc. Functions](https://github.com/Automunge/AutoMunge/blob/master/README.md#misc-functions)
* [Parsed Categoric Encodings](https://github.com/Automunge/AutoMunge/blob/master/README.md#Parsed-Categoric-Encodings)
* [More Efficient Parsed Categoric Encodings](https://github.com/Automunge/AutoMunge/blob/master/README.md#more-efficient-Parsed-Categoric-Encodings)
* [Multi-tier Parsed-Categoric-Encodings](https://github.com/Automunge/AutoMunge/blob/master/README.md#multi-tier-Parsed-Categoric-Encodings)
* [List of Root Categories](https://github.com/Automunge/AutoMunge/blob/master/README.md#list-of-root-categories)
* [List of Suffix Appenders](https://github.com/Automunge/AutoMunge/blob/master/README.md#list-of-suffix-appenders)
* [Other Reserved Strings](https://github.com/Automunge/AutoMunge/blob/master/README.md#other-reserved-strings)
* [Root Category Family Tree Definitions](https://github.com/Automunge/AutoMunge/blob/master/README.md#root-category-family-tree-definitions)
___
### Intro
Automunge has a built in library of transformations that can be passed for
specific columns with assigncat. (A column if left unassigned will defer to
the automated default methods to evaluate properties of the data to infer
appropriate methods of numerical encoding.) For example, a user can pass a
min-max scaling method to a list of specific columns with headers 'column1',
'column2' with:
```
assigncat = {'mnmx':['column1', 'column2']}
```
When a user assigns a column to a specific category, that category is treated
as the root category for the tree of transformations. Each key has an
associated transformation function (where the root category transformation function
is only applied if the root key is also found in the tree of family primitives).
The tree of family primitives, as introduced earlier, applies first the keys found
in upstream primitives i.e. parents/siblings/auntsuncles/cousins. If a transform
is applied for a primitive that includes downstream offspring, such as parents/
siblings, then the family tree for that key with offspring is inspected to determine
downstream offspring categories, for example if we have a parents key of 'mnmx',
then any children/niecesnephews/coworkers/friends in the 'mnmx' family tree will
be applied as parents/siblings/auntsuncles/cousins, respectively. Note that the
designation for supplements/replaces refers purely to the question of whether the
column to which the transform is being applied is kept in place or removed.
Now we'll start here by listing again the family tree primitives for those root
categories built into the automunge library. After that we'll give a quick
narrative for each of the associated transformation functions. First here again
are the family tree primitives.
```
'parents' :
upstream / first generation / replaces column / with offspring
'siblings':
upstream / first generation / supplements column / with offspring
'auntsuncles' :
upstream / first generation / replaces column / no offspring
'cousins' :
upstream / first generation / supplements column / no offspring
'children' :
downstream parents / offspring generations / replaces column / with offspring
'niecesnephews' :
downstream siblings / offspring generations / supplements column / with offspring
'coworkers' :
downstream auntsuncles / offspring generations / replaces column / no offspring
'friends' :
downstream cousins / offspring generations / supplements column / no offspring
```
Here is a quick description of the transformation functions associated
with each key which can either be assigned to a family tree primitive (or used
as a root key). We're continuing to build out this library of transformations.
In some cases different transformation categories may be associated with the
same set of transformation functions, but may be distinguished by different
family tree aggregations of transformation category sets.
Note the design philosophy is that any transform can be applied to any type
of data and if the data is not suited (such as applying a numeric transform
to a categorical set) the transform will just return all zeros. Note the
default infill refers to the infill applied under 'standardinfill'. Note the
default NArowtype refers to the categories of data that won't be subject to
infill.
### Label Set Encodings
Label set encodings are unique in that they don't include an aggregated NArw missing data markers
based on NArw_marker parameter. Missing data in label sets are subject to row deletions. Note that inversion of
label set encodings is support by the postmunge(.) inversion parameter.
* lbnm: for numeric label sets, entries are given a pass-through transform via 'exc2' (the numeric default under automation)
* lbnb: for numeric label sets, entries are given a z-score normalization via 'nmbr'
* lbor: for categoric label sets, entries are given an ordinal encoding via 'ordl' (the categoric default under automation)
* lb10: for categoric label sets, entries are given a binary encoding via '1010'
* lbos: for categoric label sets, entries are given an ordinal encoding via 'ordl' followed by a conversion to
string by 'strg' (some ML libraries prefer string encoded labels to recognize the classification application)
* lbte: for categoric label sets, entries are given a one-hot encoding (this has some interpretability benefits over ordinal)
* lbbn: for categoric label sets with 2 unique values, entries are given a binarization via 'bnry'
* lbsm: for categoric encoding with smoothed labels (i.e. "label smoothing"), further described in smth transform below (accepts activation parameter for activation threshold)
* lbfs: for categoric encoding with fitted smoothed labels (i.e. fitted label smoothing), further described in fsmh transform below (accepts activation parameter for activation threshold)
* lbda: for date-time label sets, entries are encoded comparable to 'dat6' described further below
### Numeric Set Normalizations
Please note that a survey of numeric transforms was provided in the paper [Numeric Encoding Options with Automunge](https://medium.com/automunge/a-numbers-game-b68ac261c40d).
* nmbr/nbr2/nbr3/nmdx/nmd2/nmd3: z-score normalization<br/>
(x - mean) / (standard deviation)
- useful for: normalizing numeric sets of unknown distribution
- default infill: negzeroinfill
- default NArowtype: numeric
- suffix appender: '\_nmbr' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'cap' and 'floor', default to False for no floor or cap,
True means floor/cap based on training set min/max, otherwise passed values serve as floor/cap to scaling,
noting that if cap<max then max reset to cap and if floor>min then min reset to floor
cap and floor based on pre-transform values
- 'stdev_cap', defaults to False, when cap and floor aren't specified, can pass an integer or float
to serve a cap/floor based on this number of standard deviations from the mean
- 'multiplier' and 'offset' to apply multiplier and offset to post-transform values, default to 1,0,
note that multiplier is applied prior to offset
- 'abs_zero', defaults to True, deactivate to turn off conversion of negative zeros to positive zeros applied prior to infill (this is included to supplement negzeroinfill)
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: mean / std / max / min / median / MAD
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* nbr4: z-score normalization similar to nmbr but with defaultinfill of zeroinfill instead of negzeroinfill and with abs_zero parameter deactivated<br/>
* mean/mea2/mea3: mean normalization (like z-score in the numerator and min-max in the denominator)<br/>
(x - mean) / (max - min)
My intuition says z-score has some benefits but really up to the user which they prefer.
- useful for: similar to z-score except data remains in fixed range
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_mean' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'cap' and 'floor', default to False for no floor or cap,
True means floor/cap based on training set min/max, otherwise passed values serve as floor/cap to scaling,
noting that if cap<max then max reset to cap and if floor>min then min reset to floor
cap and floor based on pre-transform values
- 'stdev_cap', defaults to False, when cap and floor aren't specified, can pass an integer or float
to serve a cap/floor based on this number of standard deviations from the mean
- 'multiplier' and 'offset' to apply multiplier and offset to post-transform values, default to 1,0,
note that multiplier is applied prior to offset
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: minimum / maximum / mean / std / median / MAD
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* mnmx/mnm2/mnm5/mmdx/mmd2/mmd3: vanilla min-max scaling<br/>
(x - min) / (max - min)
- useful for: normalizing numeric sets where all non-negative output is preferred
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_mnmx' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'cap' and 'floor', default to False for no floor or cap,
True means floor/cap based on training set min/max, otherwise passed values serve as floor/cap to scaling,
noting that if cap<max then max reset to cap and if floor>min then min reset to floor
cap and floor based on pre-transform values
- 'stdev_cap', defaults to False, when cap and floor aren't specified, can pass an integer or float
to serve a cap/floor based on this number of standard deviations from the mean
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: minimum / maximum / maxminusmin / mean / std / cap / floor / median / MAD
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* mnm3/mnm4: min-max scaling with outliers capped at 0.01 and 0.99 quantiles
- useful for: normalizing numeric sets where all non-negative output is preferred, and outliers capped
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_mnm3' in base configuration or based on the family tree category
- assignparam parameters accepted:
- qmax or qmin to change the quantiles from 0.99/0.01
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: quantilemin / quantilemax / mean / std / median / MAD
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
* mnm6: min-max scaling with test floor set capped at min of train set (ensures
test set returned values >= 0, such as might be useful for kernel PCA for instance)
- useful for: normalizing numeric sets where all non-negative output is preferred, guarantees nonnegative in postmunge
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_mnm6' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: minimum / maximum / mean / std / median / MAD
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
* retn: related to min/max scaling but retains +/- of values, based on conditions
if max>=0 and min<=0, x=x/(max-min), elif max>=0 and min>=0 x=(x-min)/(max-min),
elif max<=0 and min<=0 x=(x-max)/(max-min)
- useful for: normalization with sign retention for interpretability
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_retn' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'cap' and 'floor', default to False for no floor or cap,
True means floor/cap based on training set min/max, otherwise passed values serve as floor/cap to scaling,
noting that if cap<max then max reset to cap and if floor>min then min reset to floor
cap and floor based on pre-transform values
- 'stdev_cap', defaults to False, when cap and floor aren't specified, can pass an integer or float
to serve a cap/floor based on this number of standard deviations from the mean
- 'multiplier' and 'offset' to apply multiplier and offset to post-transform values, default to 1,0,
note that multiplier is applied prior to offset
- 'divisor' to select between default of 'minmax' or 'mad, 'std', where minmax means scaling by divisor of max-min
std based on scaling by divisor of standard deviation and mad by median absolute deviation
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: minimum / maximum / mean / std / median / MAD
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* rtbn: retain normalization supplemented by ordinal encoded standard deviation bins
* rtb2: retain normalization supplemented by one-hot encoded standard deviation bins
* MADn/MAD2: mean absolute deviation normalization, subtract set mean <br/>
(x - mean) / (mean absolute deviation)
- useful for: normalizing sets with fat-tailed distribution
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_MADn' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: mean / MAD / maximum / minimum / median
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* MAD3: mean absolute deviation normalization, subtract set maximum<br/>
(x - maximum) / (mean absolute deviation)
- useful for: normalizing sets with fat-tailed distribution
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_MAD3' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: mean / MAD / datamax / maximum / minimum / median
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* mxab: max absolute scaling normalization (just including this one for completeness, retn is a much better option to ensure consistent scaling between sets)<br/>
(x) / max absolute
- useful for: normalizing sets by dividing by max, commonly used in some circles
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_mxab' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: minimum / maximum / maxabs / mean / std
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* lgnm: normalization intended for lognormal distributed numerical sets,
achieved by performing a logn transform upstream of a nmbr normalization.
- useful for: normalizing sets within proximity of lognormal distribution
- default infill: mean
- default NArowtype: positivenumeric
- suffix appender: '_lgnm_nmbr'
- assignparam parameters accepted: can pass params to nmbr consistent with nmbr documentation above
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: consistent with both logn and nmbr
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
### Numeric Set Transformations
* bxcx/bxc2/bxc3/bxc4/bxc5: performs Box-Cox power law transformation. Applies infill to
values <= 0. Note we currently have a test for overflow in returned results and if found
set to 0. Please note that this method makes use of scipy.stats.boxcox. Please refer to
family trees below for full set of transformation categories associated with these roots.
- useful for: translates power law distributions to closer approximate gaussian
- default infill: mean (i.e. mean of values > 0)
- default NArowtype: positivenumeric
- suffix appender: '_bxcx' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: trnsfrm_mean / bxcx_lmbda / bxcxerrorcorrect / mean
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: no
* qttf/qtt2: performs quantile transformation to transform distribution properties of feature set.
Please note this method makes use of sklearn.preprocessing.QuantileTransformer from Scikit-Learn.
qttf converts to a normal output distribution, qtt2 converts to a uniform output distribution. When received data is all non-numeric returns as 0.
- useful for: translates distributions to closer approximate gaussian (may be applied as alternative to bxcx)
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_qttf' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'output_distribution': defualts to 'normal' for qttf, or 'uniform' for qtt2
- 'random_state': based on automunge(.) randomseed
- other parameters and their type requirements consistent with scikit documentation (n_quantiles, ignore_implicit_zeros, subsample)
- note that copy parameter not supported, fit parameters not supported
- driftreport postmunge metrics: input_max / input_min / input_stdev / input_mean
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
* log0/log1: performs logarithmic transform (base 10). Applies infill to values <= 0.
- useful for: sets with mixed range of large and small values
- default infill: meanlog
- default NArowtype: positivenumeric
- suffix appender: '_log0' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: meanlog
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* logn: performs natural logarithmic transform (base e). Applies infill to values <= 0.
- useful for: sets with mixed range of large and small values
- default infill: meanlog
- default NArowtype: positivenumeric
- suffix appender: '_logn' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: meanlog
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* sqrt: performs square root transform. Applies infill to values < 0.
- useful for: common mathematic transform
- default infill: mean
- default NArowtype: nonnegativenumeric
- suffix appender: '_sqrt' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: meansqrt
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* addd: performs addition of an integer or float to a set
- useful for: common mathematic transform
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_addd' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'add' for value added (default to 1)
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: mean, add
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* sbtr: performs subtraction of an integer or float to a set
- useful for: common mathematic transform
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_sbtr' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'subtract' for value subtracted (default to 1)
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: mean, subtract
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* mltp: performs multiplication of an integer or float to a set
- useful for: common mathematic transform
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_mltp' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'multiply' for value multiplied (default to 2)
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: mean, multiply
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* divd: performs division of an integer or float to a set
- useful for: common mathematic transform
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_divd' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'divide' for value subtracted (default to 2)
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: mean, divide
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* rais: performs raising to a power of an integer or float to a set
- useful for: common mathematic transform
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_rais' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'raiser' for value raised (default to 2)
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: mean, raiser
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* absl: performs absolute value transform to a set
- useful for: common mathematic transform
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_absl' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: mean
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with partial recovery
* trigometric functions sint/cost/tant/arsn/arcs/artn: performs trigometric transformations.
Transforms are built on top of numpy np.sin/np.cos/np.tan/np.arcsin/np.arccos/np.arctan respectively.
- useful for: common mathematic transform
- default infill: adjinfill
- default NArowtype: numeric
- suffix appender: based on the family tree category
- assignparam parameters accepted:
- 'operation': defaults to operation associated with the function, accepts {'sin', 'cos', 'tan', 'arsn', 'arcs', 'artn'}
- driftreport postmunge metrics: maximum, minimum
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with partial recovery
Q Notation family of transforms return a multicolumn binary encoded set with registers for sign, integers, and fractionals.
Transforms accept parameters integer_bits / fractional_bits / sign_bit for register sizes, care should be taken for
adequate registers to avoid overflow (overflow entries have values replaced with max or min capacity based on register sizes).
Default register sizes were selected to accommodate z-score normalized data with +/-6
standard deviations from mean and approximately 4 significant figures in decimals. For example, with default parameters an input column 'floats' will return columns: ['floats_qbt1_sign', 'floats_qbt1_2^2', 'floats_qbt1_2^1', 'floats_qbt1_2^0', 'floats_qbt1_2^-1', 'floats_qbt1_2^-2', 'floats_qbt1_2^-3', 'floats_qbt1_2^-4', 'floats_qbt1_2^-5', 'floats_qbt1_2^-6', 'floats_qbt1_2^-7', 'floats_qbt1_2^-8', 'floats_qbt1_2^-9', 'floats_qbt1_2^-10', 'floats_qbt1_2^-11', 'floats_qbt1_2^-12'].
Further details on the Q notation family of transforms provided in the essay [A New Kind of Data](https://medium.com/automunge/a-new-kind-of-data-1f1bcf90822d).
* qbt1: binary encoded signed floats with registers for sign, integers, and fractionals, default overflow at +/- 8.000
- useful for: feeding normalized floats to quantum circuits
- default infill: negative zero
- default NArowtype: numeric
- suffix appender: '_qbt1_2^#' where # integer associated with register and also '_qbt1_sign'
- assignparam parameters accepted:
- suffix: defaults to 'qbt1'
- sign_bit: boolean defaults to True to include sign register
- integer_bits: defaults to 3 for number of bits in register
- fractional_bits: defaults to 12 for number of bits in register
- angle_bits: boolean, defaults to False, when activated records activations as angles 0/pi instead of 0/1
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: maximum, minimum, mean, stdev
- returned datatype: int8
- inversion available: yes with full recovery
* qbt2: binary encoded signed integers with registers for sign and integers, default overflow at +/-32,767
- useful for: feeding floats to quantum circuits
- default infill: zero
- default NArowtype: negative zero
- suffix appender: '_qbt2_2^#' where # integer associated with register and also '_qbt2_sign'
- assignparam parameters accepted:
- suffix: defaults to 'qbt2'
- sign_bit: boolean defaults to True to include sign register
- integer_bits: defaults to 15 for number of bits in register
- fractional_bits: defaults to 0 for number of bits in register
- angle_bits: boolean, defaults to False, when activated records activations as angles 0/pi instead of 0/1
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: maximum, minimum, mean, stdev
- returned datatype: int8
- inversion available: yes with full recovery
* qbt3: binary encoded unsigned floats with registers for integers and fractionals, default overflow at 8.000 and <0
- useful for: feeding unsigned normalized floats to quantum circuits
- default infill: zero
- default NArowtype: numeric
- suffix appender: '_qbt3_2^#' where # integer associated with register
- assignparam parameters accepted:
- suffix: defaults to 'qbt3'
- sign_bit: boolean defaults to False, activate to include sign register
- integer_bits: defaults to 3 for number of bits in register
- fractional_bits: defaults to 13 for number of bits in register
- angle_bits: boolean, defaults to False, when activated records activations as angles 0/pi instead of 0/1
- driftreport postmunge metrics: maximum, minimum, mean, stdev
- returned datatype: int8
- inversion available: yes with full recovery
* qbt4: binary encoded unsigned integers with registers for integers, default overflow at 65,535 and <0
- useful for: feeding unsigned floats to quantum circuits
- default infill: zero
- default NArowtype: numeric
- suffix appender: '_qbt4_2^#' where # integer associated with register
- assignparam parameters accepted:
- suffix: defaults to 'qbt4'
- sign_bit: boolean defaults to False, activate to include sign register
- integer_bits: defaults to 16 for number of bits in register
- fractional_bits: defaults to 0 for number of bits in register
- angle_bits: boolean, defaults to False, when activated records activations as angles 0/pi instead of 0/1
- driftreport postmunge metrics: maximum, minimum, mean, stdev
- returned datatype: int8
- inversion available: yes with full recovery
Other Q Notation root categories:
- nmqb has upstream z score to qbt1 and z score not retained
- nmq2 has upstream z score to qbt1 and z score is retained
- mmqb has upstream min max to qbt3 and min max not retained
- mmq2 has upstream min max to qbt3 and min max is retained
- lgnr logarithmic number representation, registers 1 for sign, 1 for log sign, 4 log integer registers, 3 log fractional registers
### Numeric Set Bins and Grainings
* pwrs: bins groupings by powers of 10 (for values >0)
- useful for: feature engineering for linear models, also for oversampling bins with TrainFreqLevelizer parameter
- default infill: no activation (defaultinfill not supported)
- default NArowtype: positivenumeric
- suffix appender: '\_pwrs_10^#' where # is integer indicating target powers of 10 for column
- assignparam parameters accepted:
- 'negvalues', boolean defaults to False, True bins values <0
(recommend using pwr2 instead of this parameter since won't update NArowtype)
- 'suffix': to change suffix appender (leading underscore added internally)
- 'zeroset': boolean defaults to False, when True the number zero receives a distinct activation instead of grouping with missing data (recommend also updating NArowtype, such as to nonnegativenumeric)
- 'cap': defaults to False for no cap, can pass as integer or float and > values replaced with this figure
- 'floor': defaults to False for no floor, can pass as integer or float and < values replaced with this figure
- driftreport postmunge metrics: powerlabelsdict / meanlog / maxlog / activation_ratios
- returned datatype: int8
- inversion available: yes with partial recovery
* pwr2: bins groupings by powers of 10 (comparable to pwrs with negvalues parameter activated for values >0 & <0)
- useful for: feature engineering for linear models, also for oversampling bins with TrainFreqLevelizer parameter
- default infill: no activation (defaultinfill not supported)
- default NArowtype: nonzeronumeric
- suffix appender: '\_pwr2_10^#' or '\_pwr2_-10^#' where # is integer indicating target powers of 10 for column
- assignparam parameters accepted:
- 'negvalues', boolean defaults to True, True bins values <0
(recommend using pwrs instead of this parameter since won't update NArowtype)
- 'zeroset': boolean defaults to False, when True the number zero receives a distinct activation instead of grouping with missing data (recommend also updating NArowtype, such as to numeric)
- 'suffix': to change suffix appender (leading underscore added internally)
- 'cap': defaults to False for no cap, can pass as integer or float and > values replaced with this figure
- 'floor': defaults to False for no floor, can pass as integer or float and < values replaced with this figure
- driftreport postmunge metrics: powerlabelsdict / labels_train / missing_cols / activation_ratios
- returned datatype: int8
- inversion available: yes with partial recovery
* pwor: for numerical sets, outputs an ordinal encoding indicating where a
value fell with respect to powers of 10
- useful for: ordinal version of pwrs
- default infill: zero (defaultinfill not supported)
- default NArowtype: positivenumeric
- suffix appender: '_pwor' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'negvalues', boolean defaults to False, True bins values <0 (recommend using por2 instead of this parameter since won't update NArowtype)
- 'zeroset': boolean defaults to False, when True the number zero receives a distinct activation instead of grouping with missing data (recommend also updating NArowtype, such as to nonnegativenumeric)
- 'suffix': to change suffix appender (leading underscore added internally)
- 'cap': defaults to False for no cap, can pass as integer or float and > values replaced with this figure
- 'floor': defaults to False for no floor, can pass as integer or float and < values replaced with this figure
- driftreport postmunge metrics: meanlog / maxlog / ordl_activations_dict
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with partial recovery
* por2: for numerical sets, outputs an ordinal encoding indicating where a
value fell with respect to powers of 10 (comparable to pwor with negvalues parameter activated)
- useful for: ordinal version of pwr2
- default infill: zero (a distinct encoding) (defaultinfill not supported)
- default NArowtype: nonzeronumeric
- suffix appender: '_por2' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'negvalues', boolean defaults to True, True bins values <0 (recommend using pwor instead of this parameter since won't update NArowtype)
- 'zeroset': boolean defaults to False, when True the number zero receives a distinct activation instead of grouping with missing data (recommend also updating NArowtype, such as to numeric)
- 'suffix': to change suffix appender (leading underscore added internally)
- 'cap': defaults to False for no cap, can pass as integer or float and > values replaced with this figure
- 'floor': defaults to False for no floor, can pass as integer or float and < values replaced with this figure
- driftreport postmunge metrics: train_replace_dict / test_replace_dict / ordl_activations_dict
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with partial recovery
* pwbn: comparable to pwor but followed by a binary encoding, such as may be useful for data with
high variability
- useful for: ordinal version of pwrs
- default infill: zero (a distinct encoding)
- default NArowtype: nonzeronumeric
- suffix appender: '_pwbn_1010_#' (where # is integer for binary encoding activation number)
- assignparam parameters accepted:
- accepts parameters comparable to pwor
- driftreport postmunge metrics: train_replace_dict / test_replace_dict / ordl_activations_dict
- returned datatype: int8
- inversion available: yes with partial recovery
* por3: comparable to por2 but followed by a binary encoding, such as may be useful for data with
high variability
- useful for: ordinal version of pwr2
- default infill: zero (a distinct encoding)
- default NArowtype: nonzeronumeric
- suffix appender: '_por3_1010_#' (where # is integer for binary encoding activation number)
- assignparam parameters accepted:
- accepts parameters comparable to pwor
- driftreport postmunge metrics: train_replace_dict / test_replace_dict / ordl_activations_dict
- returned datatype: int8
- inversion available: yes with partial recovery
* bins: for numerical sets, outputs a set of columns (defaults to 6) indicating where a
value fell with respect to number of standard deviations from the mean of the
set (i.e. integer suffix represent # from mean as <-2:0, -2-1:1, -10:2, 01:3, 12:4, >2:5)
Note this can be activated to supplement numeric sets with binstransform automunge parameter.
- useful for: feature engineering for linear models, also for oversampling bins with TrainFreqLevelizer parameter
- default infill: mean
- default NArowtype: numeric
- suffix appender: '\_bins\_#' where # is integer identifier of bin
- assignparam parameters accepted:
- bincount integer for number of bins, defaults to 6
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: binsmean / binsstd / activation_ratios
- returned datatype: int8
- inversion available: yes with partial recovery
* bsor: for numerical sets, outputs an ordinal encoding indicating where a
value fell with respect to number of standard deviations from the mean of the
set (i.e. integer encoding represent # from mean as <-2:0, -2-1:1, -10:2, 01:3, 12:4, >2:5)
- useful for: ordinal version of bins
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_bsor' in base configuration or based on the family tree category
- assignparam parameters accepted:
- bincount as integer for # of bins (defaults to 6)
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: ordinal_dict / ordl_activations_dict / binsmean / binsstd
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with partial recovery
* bnwd/bnwK/bnwM: for numerical set graining to fixed width bins for one-hot encoded bins
(columns without activations in train set excluded in train and test data).
bins default to width of 1/1000/1000000 e.g. for bnwd/bnwK/bnwM
- useful for: bins for sets with known recurring demarcations
- default infill: mean
- default NArowtype: numeric
- suffix appender: '\_bnwd\_#1\_#2' where #1 is the width and #2 is the bin identifier (# from min)
and 'bnwd' as bnwK or bnwM based on variant
- assignparam parameters accepted:
- 'width' to set bin width
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: binsmean / bn_min / bn_max / bn_delta / bn_count / bins_id /
bins_cuts / bn_width_bnwd (or bnwK/bnwM) / textcolumns / activation_ratios
- returned datatype: int8
- inversion available: yes with partial recovery
* bnwo/bnKo/bnMo: for numerical set graining to fixed width bins for ordinal encoded bins
(integers without train set activations still included in test set).
bins default to width of 1/1000/1000000 e.g. for bnwd/bnwK/bnwM
- useful for: ordinal version of preceding
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_bnwo' (or '_bnKo', '_bnMo')
- assignparam parameters accepted:
- 'width' to set bin width
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: binsmean / bn_min / bn_max / bn_delta / bn_count / bins_id /
bins_cuts / bn_width / ordl_activations_dict
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with partial recovery
* bnep/bne7/bne9: for numerical set graining to equal population bins for one-hot encoded bins.
bin count defaults to 5/7/9 e.g. for bnep/bne7/bne9
- useful for: bins for sets with unknown demarcations
- default infill: no activation (defaultinfill not supported)
- default NArowtype: numeric
- suffix appender: '\_bnep\_#1' where #1 is the bin identifier (# from min) (or bne7/bne9 instead of bnep)
- assignparam parameters accepted:
- 'bincount' to set number of bins
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: binsmean / bn_min / bn_max / bn_delta / bn_count / bins_id /
bins_cuts / bincount_bnep (or bne7/bne9) / textcolumns /
activation_ratios
- returned datatype: int8
- inversion available: yes with partial recovery
* bneo/bn7o/bn9o: for numerical set graining to equal population bins for ordinal encoded bins.
bin count defaults to 5/7/9 e.g. for bneo/bn7o/bn9o
- useful for: ordinal version of preceding
- default infill: adjacent cell
- default NArowtype: numeric
- suffix appender: '\_bneo' (or bn7o/bn9o)
- assignparam parameters accepted:
- 'bincount' to set number of bins
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: binsmean / bn_min / bn_max / bn_delta / bn_count / bins_id /
bins_cuts / bincount / ordl_activations_dict
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with partial recovery
* bkt1: for numerical set graining to user specified encoded bins. First and last bins unconstrained.
- useful for: bins for sets with known irregular demarcations
- default infill: no activation (defaultinfill not supported)
- default NArowtype: numeric
- suffix appender: '\_bkt1\_#1' where #1 is the bin identifier (# from min)
- assignparam parameters accepted:
- 'buckets', a list of numbers, to set bucket boundaries (leave out +/-'inf')
defaults to [0,1,2] (arbitrary plug values), can also pass buckets values as percent of range by framing as a set instead of list e.g. {0,0.25,0.50,1}
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: binsmean / buckets_bkt1 / bins_cuts / bins_id / textcolumns /
activation_ratios
- returned datatype: int8
- inversion available: yes with partial recovery
* bkt2: for numerical set graining to user specified encoded bins. First and last bins bounded.
- useful for: bins for sets with known irregular demarcations, similar to preceding but first and last bins bounded
- default infill: no activation (defaultinfill not supported)
- default NArowtype: numeric
- suffix appender: '\_bkt2\_#1' where #1 is the bin identifier (# from min)
- assignparam parameters accepted:
- 'buckets', a list of numbers, to set bucket boundaries
defaults to [0,1,2] (arbitrary plug values), can also pass buckets values as percent of range by framing as a set instead of list e.g. {0,0.25,0.50,1}
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: binsmean / buckets_bkt2 / bins_cuts / bins_id / textcolumns /
activation_ratios
- returned datatype: int8
- inversion available: yes with partial recovery
* bkt3: for numerical set graining to user specified ordinal encoded bins. First and last bins unconstrained.
- useful for: ordinal version of bkt1
- default infill: unique activation
- default NArowtype: numeric
- suffix appender: '_bkt3' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'buckets', a list of numbers, to set bucket boundaries (leave out +/-'inf')
defaults to [0,1,2] (arbitrary plug values), can also pass buckets values as percent of range by framing as a set instead of list e.g. {0,0.25,0.50,1}
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: binsmean / buckets / bins_cuts / bins_id / ordl_activations_dict
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with partial recovery
* bkt4: for numerical set graining to user specified ordinal encoded bins. First and last bins bounded.
- useful for: ordinal version of bkt2
- default infill: unique activation
- default NArowtype: numeric
- suffix appender: '_bkt4' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'buckets', a list of numbers, to set bucket boundaries
defaults to [0,1,2] (arbitrary plug values), can also pass buckets values as percent of range by framing as a set instead of list e.g. {0,0.25,0.50,1}
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: binsmean / buckets / bins_cuts / bins_id / ordl_activations_dict
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with partial recovery
* note that bins each have variants for one-hot vs ordinal vs binary encodings
one-hot : bkt1, bkt2, bins, bnwd, bnwK, bnwM, bnep, bne7, bne9, pwrs, pwr2
ordinal : bkt3, bkt4, bsor, bnwo, bnKo, bnMo, bneo, bn7o, bn9o, pwor, por2
binary : bkb3, bkb4, bsbn, bnwb, bnKb, bnMb, bneb, bn7b, bn9b, pwbn, por3
* tlbn: returns equal population bins in separate columns with activations replaced by min-max scaled
values within that segment's range (between 0-1) and other values subject to an infill of -1
(intended for use to evaluate feature importance of different segments of a numerical set's distribution
with metric2 results from a feature importance evaluation). Further detail on the tlbn transform provided
in the essay [Automunge Influence](https://medium.com/automunge/automunge-influence-382d44786e43).
- useful for: evaluating relative feature importance between different segments of a numeric set distribution
- default infill: no activation (this is the recommended infill for this transform)
- default NArowtype: numeric
- suffix appender: '\_tlbn\_#' where # is the bin identifier, and max# is right tail / min# is left tail
- assignparam parameters accepted:
- 'bincount' to set number of bins (defaults to 9)
- 'buckets', defaults to False, can pass as a list of bucket boundaries for custom distribution segments
which will take precedence over bincount (leave out -/+inf which will be added for first and last bins internally)
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: binsmean / bn_min / bn_max / bn_delta / bn_count / bins_id /
bins_cuts / bincount_tlbn / textcolumns / activation_ratios
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
### Sequential Numerical Set Transformations
Please note that sequential transforms assume the forward progression of time towards direction of bottom of dataframe.
Please note that only stdrdinfill (adjinfill) are supported for shft transforms.
* dxdt/d2dt/d3dt/d4dt/d5dt/d6dt: rate of change (row value minus value in preceding row), high orders
return lower orders (e.g. d2dt returns original set, dxdt, and d2dt), all returned sets include 'retn'
normalization which scales data with min/max while retaining +/- sign
- useful for: time series data, also bounding sequential sets
- default infill: adjacent cells
- default NArowtype: numeric
- suffix appender: '_dxdt' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'periods' sets number of time steps offset to evaluate, defaults to 1
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: positiveratio / negativeratio / zeroratio / minimum / maximum / mean / std
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: no
* dxd2/d2d2/d3d2/d4d2/d5d2/d6d2: denoised rate of change (average of last two or more rows minus average
of preceding two or more rows), high orders return lower orders (e.g. d2d2 returns original set, dxd2,
and d2d2), all returned sets include 'retn' normalization
- useful for: time series data, also bounding sequential sets
- default infill: adjacent cells
- default NArowtype: numeric
- suffix appender: '_dxd2' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'periods' sets number of time steps offset to evaluate, defaults to 2
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: positiveratio / negativeratio / zeroratio / minimum / maximum / mean / std
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: no
* nmdx/nmd2/nmd3/nmd4/nmd5/nmd6: comparable to dxdt but includes upstream of sequential transforms a
nmrc numeric string parsing top extract numbers from string sets
* mmdx/mmd2/mmd3/mmd4/mmd5/mmd6: comparable to dxdt but uses z-score normalizations via 'nbr2' instead of 'retn'
* dddt/ddd2/ddd3/ddd4/ddd5/ddd6: comparable to dxdt but no normalizations applied
* dedt/ded2/ded3/ded4/ded5/ded6: comparable to dxd2 but no normalizations applied
- inversion available: no
* shft/shf2/shf3: shifted data forward by a period number of time steps defaulting to 1/2/3. Note that NArw aggregation
not supported for shift transforms, infill only available as adjacent cell
- useful for: time series data, carrying prior time steps forward
- default infill: adjacent cells (defaultinfill not supported)
- default NArowtype: numeric
- suffix appender: '_shft' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'periods' sets number of time steps offset to evaluate, defaults to 1/2/3
- 'suffix' sets the suffix appender of returned column
as may be useful to distinguish if applying this multiple times
- driftreport postmunge metrics: positiveratio / negativeratio / zeroratio / minimum / maximum / mean / std
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
### Categorical Set Encodings
* bnry: converts sets with two values to boolean identifiers. Defaults to assigning
1 to most common value and 0 to second most common, unless 1 or 0 is already included
in most common of the set then defaults to maintaining those designations. If applied
to set with >2 entries applies infill to those entries beyond two most common.
- useful for: binarizing sets with two unique values (differs from 1010 in that distinct encoding isn't registered for missing data to return single column)
- default infill: most common value
- default NArowtype: justNaN
- suffix appender: '_bnry' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'str_convert': boolean defaults as False for distinct encodings between numbers and string equivalents
e.g. 2 != '2', or when passed as True e.g. 2 == '2'. Also can be passed as 'conditional_on_bytes' which resets to True when bytes entries are present in train set otherwise resets to False.
- 'suffix': to change suffix appender (leading underscore added internally)
- 'invert': reverses the 0/1 convention (results in most common value having 0 activation which is default for lbbn label processing to resolve a remote edge case for labels)
- driftreport postmunge metrics: missing / 1 / 0 / extravalues / oneratio / zeroratio
- returned datatype: int8
- inversion available: yes with full recovery
* bnr2: (Same as bnry except for default infill.)
- useful for: similar to bnry preceding but with different default infill
- default infill: least common value
- default NArowtype: justNaN
- suffix appender: '_bnr2' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'str_convert': boolean defaults as False for distinct encodings between numbers and string equivalents
e.g. 2 != '2', or when passed as True e.g. 2 == '2'. Also can be passed as 'conditional_on_bytes' which resets to True when bytes entries are present in train set otherwise resets to False.
- 'suffix': to change suffix appender (leading underscore added internally)
- 'invert': reverses the 0/1 convention (results in most common value having 0 activation which is default for lbbn label processing to resolve a remote edge case for labels)
- driftreport postmunge metrics: missing / 1 / 0 / extravalues / oneratio / zeroratio
- returned datatype: int8
- inversion available: yes with full recovery
* text/txt2: converts categorical sets to one-hot encoded set of boolean identifiers
(consistently encodings numbers and numerical string equivalents due to column labeling convention, e.g. 12 == '12').
Note that text and onht are implemented with the same functions by updates to the suffix_convention parameter.
- useful for: one hot encoding, returns distinct column activation per unique entry
- default infill: no activation in row
- default NArowtype: justNaN
- suffix appender:
- '_text\_(entry)' where entry is the categoric entry target of column activations (one of the unique values found in received column)
- assignparam parameters accepted:
- 'suffix_convention', accepts one of {'text', 'onht'} for suffix convention, defaults to 'text'. Note that 'str_convert' and 'null_activation' parameters only accepted in 'onht' configuration.
- 'str_convert', applied as True in text suffix_convention for common encodings between numbers and string equivalents e.g. 2 == '2'. (text does not support other str_convert scenarios due to column header conventions)
- 'null_activation': applied as False in text suffix_convention for no activations for missing data
- 'all_activations': defaults to False, can pass as a list of all entries that will be targets for activations (which may have fewer or more entries than the set of unique values found in the train set, including entries not found in the train set)
- 'add_activations': defaults to False, user can pass as a list of entries that will be added as targets for activations (resulting in extra returned columns if those entries aren't present in the train set)
- 'less_activations': defaults to False, user can pass as a list of entries that won't be treated as targets for activation (these entries will instead receive no activation)
- 'consolidated_activations': defaults to False, user can pass a list of entries (or a list of lists of entries) that will have their activations consolidated to a single common activation
- 'ordered_overide': default to True, accepts boolean indicating if columns received as pandas ordered categoric will use that basis for order of the returned columns. Note this is deactivated when activation parameters are specified (all/add/less/consolidated).
- 'frequency_sort': boolean defaults to True, when activated the order of returned columns is sorted by frequency of entries as found in the train set, when deactivated sorting is alphabetic
* onht: converts categorical sets to one-hot encoded set of boolean identifiers
(like text but different convention for returned column headers and distinct encodings for numbers and numerical string equivalents). Note that text and onht are implemented with the same functions by updates to the suffix_convention parameter. To apply onht to a "messy" feature with multiple columns in input headers can apply assigncat set bracket specification to root category 'cns2'.
- useful for: similar to text transform preceding but with numbered column header convention
- default infill: no activation in row
- default NArowtype: justNaN
- suffix appender: '_onht\_#' where # integer corresponds to the target entry of a column
- assignparam parameters accepted:
- 'suffix_convention', accepts one of {'text', 'onht'} for suffix convention, defaults to 'text' (onht process_dict specification overwrites this to 'onht'). Note that 'str_convert' and 'null_activation' parameters only accepted in 'onht' configuration.
- 'str_convert', boolean defaults as True for common encodings between numbers and string equivalents
e.g. 2 != '2', when passed as True e.g. 2 == '2' (the False scenario does not support bytes type entries). Also can be passed as 'conditional_on_bytes' which resets to True when bytes entries are present in train set otherwise resets to False.
- 'null_activation': defaults to False, when True missing data is returned with distinct activation in final column in set. (Also accepts as 'Binary' which is for internal use.)
- 'all_activations': defaults to False, can pass as a list of all entries that will be targets for activations (which may have fewer or more entries than the set of unique values found in the train set, including entries not found in the train set)
- 'add_activations': defaults to False, user can pass as a list of entries that will be added as targets for activations (resulting in extra returned columns if those entries aren't present in the train set)
- 'less_activations': defaults to False, user can pass as a list of entries that won't be treated as targets for activation (these entries will instead receive no activation)
- 'consolidated_activations': defaults to False, user can pass a list of entries (or a list of lists of entries) that will have their activations consolidated to a single common activation
- 'ordered_overide': default to True, accepts boolean indicating if columns received as pandas ordered categoric will use that basis for order of the returned columns. Note this is deactivated when activation parameters are specified (all/add/less/consolidated).
- 'frequency_sort': boolean defaults to True, when activated the order of returned columns is sorted by frequency of entries as found in the train set, when deactivated sorting is alphabetic
- driftreport postmunge metrics: textlabelsdict_text / <column> + '_ratio' (column specific)
text_categorylist is key between columns and target entries
- returned datatype: int8
- inversion available: yes with full recovery
* ordl/ord2/ord5: converts categoric sets to ordinal integer encoded set, encodings sorted alphabetically
- useful for: categoric sets with high cardinality where one-hot or binarization may result in high dimensionality. Also default for categoric labels.
- default infill: naninfill, with returned distinct activation of integer 0
- default NArowtype: justNaN
- suffix appender: '_ordl' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'str_convert', boolean defaults as True for common encodings between numbers and string equivalents
e.g. 2 == '2'. Also can be passed as 'conditional_on_bytes' which resets to True when bytes entries are present in train set otherwise resets to False.
- 'null_activation': defaults to True for a distinct missing data encoding, when False missing data is grouped with another entry in the 0 integer encoding. (Also accepts as 'Binary' which is for internal use.)
- 'all_activations': defaults to False, can pass as a list of all entries that will be targets for activations (which may have fewer or more entries than the set of unique values found in the train set, including entries not found in the train set)
- 'add_activations': defaults to False, user can pass as a list of entries that will be added as targets for activations (resulting in extra returned columns if those entries aren't present in the train set)
- 'less_activations': defaults to False, user can pass as a list of entries that won't be treated as targets for activation (these entries will instead receive no activation)
- 'consolidated_activations': defaults to False, user can pass a list of entries (or a list of lists of entries) that will have their activations consolidated to a single common activation
- 'ordered_overide': default to True, accepts boolean indicating if columns received as pandas ordered categoric will use that basis for order of the returned columns. Note this is deactivated when activation parameters are specified (all/add/less/consolidated).
- 'frequency_sort': boolean defaults to True but set as False for ordl, when activated the order of integer activations is sorted by frequency of entries as found in the train set, when deactivated sorting is alphabetic. The 0 activation is reserved for missing data.
- driftreport postmunge metrics: ordinal_dict / ordinal_overlap_replace / ordinal_activations_dict
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with full recovery
* ord3: converts categoric sets to ordinal integer encoded set, sorted first by frequency of category
occurrence, second basis for common count entries is alphabetical. To apply ord3 to a "messy" feature with multiple columns in input headers can apply assigncat set bracket specification to root category 'cns3'.
- useful for: similar to ordl preceding but activations are sorted by entry frequency instead of alphabetical
- default infill: unique activation
- default NArowtype: justNaN
- suffix appender: '_ord3' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'ordered_overide', boolean defaults True, when True inspects for Pandas ordered categorical and
if found integer encoding order defers to that basis
- 'str_convert', boolean defaults as True for common encodings between numbers and string equivalents
e.g. 2 == '2' (the False scenario does not support bytes type entries). Also can be passed as 'conditional_on_bytes' which resets to True when bytes entries are present in train set otherwise resets to False.
- 'null_activation': defaults to True for a distinct missing data encoding, when False missing data is grouped with another entry in the 0 integer encoding. (Also accepts as 'Binary' which is for internal use.)
- 'all_activations': defaults to False, can pass as a list of all entries that will be targets for activations (which may have fewer or more entries than the set of unique values found in the train set, including entries not found in the train set)
- 'add_activations': defaults to False, user can pass as a list of entries that will be added as targets for activations (resulting in extra returned columns if those entries aren't present in the train set)
- 'less_activations': defaults to False, user can pass as a list of entries that won't be treated as targets for activation (these entries will instead receive no activation)
- 'consolidated_activations': defaults to False, user can pass a list of entries (or a list of lists of entries) that will have their activations consolidated to a single common activation
- 'ordered_overide': default to True, accepts boolean indicating if columns received as pandas ordered categoric will use that basis for order of the returned columns. Note this is deactivated when activation parameters are specified (all/add/less/consolidated).
- 'frequency_sort': boolean defaults to True, when activated the order of integer activations is sorted by frequency of entries as found in the train set, when deactivated sorting is alphabetic. The 0 activation is reserved for missing data.
- driftreport postmunge metrics: ordinal_dict / ordinal_overlap_replace / ordinal_activations_dict
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with full recovery
* ord4: derived by an ord3 transform followed by a mnmx transform. Useful as a scaled metric
(numeric in range 0-1) which ranks any redundant entries by frequency of occurrence.
* lbos: an ord3 encoding followed by downstream conversion to string dtype. This may be useful for
label sets passed to downstream libraries to ensure they treat labels as target for classification instead
of regression.
* 1010: converts categorical sets of >2 unique values to binary encoding (more memory
efficient than one-hot encoding). To apply 1010 to a "messy" feature with multiple columns in input headers can apply assigncat set bracket specification to root category 'cnsl'.
- useful for: our default categoric encoding for sets with number of entries below numbercategoryheustic (defaulting to 255)
- default infill: naninfill, with returned distinct activation set of all 0's
- default NArowtype: justNaN
- suffix appender: '\_1010\_#' where # is integer indicating order of 1010 columns
- assignparam parameters accepted:
- 'str_convert', boolean defaults as True for common encodings between numbers and string equivalents
e.g. 2 == '2'. Also can be passed as 'conditional_on_bytes' which resets to True when bytes entries are present in train set otherwise resets to False.
- 'null_activation': defaults to True for a distinct missing data encoding, when False missing data is grouped with another entry in the all 0 encoding. (Also accepts as 'Binary' which is for internal use.)
- 'all_activations': defaults to False, can pass as a list of all entries that will be targets for activations (which may have fewer or more entries than the set of unique values found in the train set, including entries not found in the train set), note NaN missing data representation will be added
- 'add_activations': defaults to False, user can pass as a list of entries that will be added as targets for activations (resulting in extra returned columns if those entries aren't present in the train set)
- 'less_activations': defaults to False, user can pass as a list of entries that won't be treated as targets for activation (these entries will instead receive no activation)
- 'consolidated_activations': defaults to False, user can pass a list of entries (or a list of lists of entries) that will have their activations consolidated to a single common activation. For consolidation with NaN missing data representation user should instead apply an assignnan conversion.
- 'max_zero': defaults to False, when activated the encodings are conducted to maximize 0 encoding representation for unique entries as sorted by frequency (e.g. most frequent entries have most zeros in their encoding.) This was implemented since 0 is the low energy state for quantum circuits. The root category '10mz' applies 1010 with this parameter defaulting to activated.
- driftreport postmunge metrics: _1010_binary_encoding_dict / _1010_overlap_replace /
_1010_binary_column_count / _1010_activations_dict
(for example if 1010 encoded to three columns based on number of categories <8,
it would return three columns with suffix appenders 1010_1, 1010_2, 1010_3)
- returned datatype: int8
- inversion available: yes with full recovery
* maxb / matx / ma10: categoric encodings that allow user to cap the number activations in the set.
maxb (ordinal), matx (one hot), and ma10 (binary).
- useful for: categoric sets where some outlier entries may not occur with enough frequency for training purposes
- default infill: plug value unique activation
- default NArowtype: justNaN
- suffix appender: '\_maxb' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'maxbincount': set a maximum number of activations (integer) default False
- 'minentrycount': set a minimum number of entries in train set to register an activation (integer) default False
- 'minentryratio': set a minimum ratio of entries in train set to register an activation (float between 0-1)
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: new_maxactivation / consolidation_count
- returned datatype: matx and ma10 as int8, maxb as conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with full recovery
* ucct: converts categorical sets to a normalized float of unique class count,
for example, a 10 row train set with two instances of 'circle' would replace 'circle' with 0.2
and comparable to test set independent of test set row count
- useful for: supplementing categoric sets with a proxy for activation frequency
- default infill: ratio of infill in train set
- default NArowtype: justNaN
- suffix appender: '_ucct' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: ordinal_dict / ordinal_overlap_replace / ordinal_activations_dict
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: no
* lngt/lngm/lnlg: returns string length of categoric entries (lngm followed by mnmx, lnlg by logn)
- useful for: supplementing categoric sets with a proxy for information content (based on string length)
- default infill: plug value of 3 (based on len(str(np.nan)) )
- default NArowtype: justNaN
- suffix appender: '_lngt' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: maximum, minimum, mean, std
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: no
* aggt: consolidate categoric entries based on user passed aggregate parameter
- useful for: performing upstream of categoric encoding when some entries are redundant
- default infill: none
- default NArowtype: justNaN
- suffix appender: '_aggt' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'aggregate' as a list or as a list of lists of aggregation sets
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: aggregate
- returned datatype: str (other categoric encodings can be returned downstream to return numeric)
- inversion available: yes with partial recovery
* smth: applies a one-hot encoding followed by a label smoothing operation to reduce activation value and increase null value. The smoothing is applied to train data but not validation or test data. Smoothing can be applied to test data in postmunge(.) by activating the traindata parameter.
- useful for: label smoothing, speculate there may be benefit for categoric encodings with noisy entries of some error rate
- default infill: none
- default NArowtype: justNaN
- suffix appender: '_smt0\_(entry)\_smth\_#' where # is integer in base configuration or based on the family tree category
- assignparam parameters accepted:
- note that parameters for the upstream onehot encoding can be passed in assignparam to the smt0 category (consistent to text transform), and smoothing parameters can be passed to the smth category
- 'activation' defaults to 0.9, a float between 0.5-1 to designate activation value
- 'LSfit' defaults to False, when True applies fitted label smoothing (consistent with fsmh)
- 'testsmooth' defaults to False, when True applies smoothing to test data in both automunge and postmunge
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: comparable to onht
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* fsmh: comparable to smth but applies by default a fitted label smoothing, in which null values are fit to ratio of activations corresponding to current activation. The smoothing is applied to train data but not validation or test data. Smoothing can be applied to test data in postmunge(.) by activating the traindata parameter. (Note that parameters for the upstream onehot encoding can be passed in assignparam to the fsm0 category (consistent to text transform), and smoothing parameters can be passed to the fsmh category
* hash: applies "the hashing trick" to convert high cardinality categoric sets to set of columns with integer word encodings
e.g. for an entry "Three word quote" may return three columns with integers corresponding to each of three words
where integer is determined by hashing, and also based on passed parameter vocab_size.
Note that hash strips out special characters. Uhsh is available if upstream uppercase conversion desired. Note that there is a possibility
of encoding overlap between entries with this transform. Also note that hash is excluded from ML infill
vocab_size calculated based on number of unique words found in train set times a multiplier (defaulting to 2), where if that
is greater than cap then reverts to cap. The hashing transforms are intended as an alternative to other categoric
encodings which doesn't require a conversion dictionary assembly for consistent processing of subsequent data, as
may benefit sets with high cardinality (i.e. high number of unique entries). The tradeoff is that inversion
is not supported as there is possibility of redundant encodings for different unique entries. Further detail on hashing
provided in the essay [Hashed Categoric Encodings with Automunge](https://medium.com/automunge/hashed-categoric-encodings-with-automunge-92c0c4b7668c).
- useful for: categoric sets with very high cardinality, default for categoric sets with (nearly) all unique entries
- default infill: none
- default NArowtype: justNaN
- suffix appender: '\_hash\_#' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'heuristic_multiplier', float defaults to 2
- 'heuristic_cap', integer defaults to 1024
- 'vocab_size', integer defaults to False, when assigned overrides heuristic
- 'space', defaults to ' ', this is used to extract words by space separator
- 'excluded_characters', defaults to [',', '.', '?', '!', '(', ')'], these characters are stripped prior to encoding
- 'salt', arbitrary string, defaults to empty string '', appended to entries to perturb encoding basis for privacy
- 'hash_alg', defaults to 'hash' for use of native python hash function for speed, 'md5' uses hashlib md5 function instead
- 'max_column_count', defaults to False, can pass as integer to cap the number of returned columns, in which case when
words are extracted the final column's encodings will be based on all remaining word and space characters inclusive
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: col_count (number of columns), vocab_size
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: no
* hsh2: similar to hash but does not partition entries by space separator, so only returns one column. Note this version doesn't scrub special characters prior to encoding.
- useful for: categoric sets with very high cardinality, default for categoric sets with number of entries exceeding numbercategoryheuristic (defaulting to 255)
- default infill: none
- default NArowtype: justNaN
- suffix appender: '_hsh2' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'heuristic_multiplier', float defaults to 2
- 'heuristic_cap', integer defaults to 1024
- 'vocab_size', integer defaults to False, when assigned overrides heuristic
- 'excluded_characters', a list of strings, defaults to [] (an empty set), these characters are stripped prior to encoding
- 'salt', arbitrary string, defaults to empty string '', appended to entries to perturb encoding basis for privacy
- 'hash_alg', defaults to 'hash' for use of native python hash function for speed, 'md5' uses hashlib md5 function instead
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: col_count (number of columns), vocab_size
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: no
* hs10: similar to hsh2 but returns activations in a set of columns with binary encodings, similar to 1010
- useful for: binary version of hsh2
- default infill: none
- default NArowtype: justNaN
- suffix appender: '\_hs10\_#' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'heuristic_multiplier', float defaults to 2
- 'heuristic_cap', integer defaults to 1024
- 'vocab_size', integer defaults to False, when assigned overrides heuristic
- 'excluded_characters', a list of strings, defaults to [] (an empty set), these characters are stripped prior to encoding
- 'salt', arbitrary string, defaults to empty string '', appended to entries to perturb encoding basis for privacy
- 'hash_alg', defaults to 'hash' for use of native python hash function for speed, 'md5' uses hashlib md5 function instead
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: col_count (number of columns), vocab_size
- returned datatype: int8
- inversion available: no
* UPCS: convert string entries to all uppercase characters
- useful for: performing upstream of categoric encodings when case configuration is irrelevant
- default infill: none
- default NArowtype: justNaN
- suffix appender: '_UPCS' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'activate', boolean defaults to True, False makes this a passthrough without conversion
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: activate
- returned datatype: str (other categoric encodings can be returned downstream to return numeric)
- inversion available: yes with partial recovery
* new processing functions Unht / Utxt / Utx2 / Utx3 / Uord / Uor2 / Uor3 / Uor6 / U101 / Ucct / Uhsh / Uhs2 / Uh10
- comparable to functions onht / text / txt2 / txt3 / ordl / ord2 / ord3 / ors6 / 1010 / ucct / hash / hsh2 / hs10
- but upstream conversion of all strings to uppercase characters prior to encoding
- (e.g. 'USA' and 'usa' would be consistently encoded)
- default infill: in uppercase conversion NaN's are assigned distinct encoding 'NAN'
- and may be assigned other infill methods in assigninfill
- default NArowtype: 'justNaN'
- suffix appender: '_UPCS' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: comparable to functions text / txt2 / txt3 / ordl / ord2 / ord3 / ors6 / 1010 / ucct
- returned datatype: comparable to functions onht / text / txt2 / txt3 / ordl / ord2 / ord3 / ors6 / 1010 / ucct / hash / hsh2 / hs10
- inversion available: yes
* ntgr/ntg2/ntg3: sets of transformations intended for application to integer sets of unknown interpretation
(such as may be continuous variables, discrete relational variables, or categoric). The ntgr family encodes
in multiple forms appropriate for each of these different types, such as to allow the ML training to identify
which is most useful. Reference the family trees below for composition details (can do a control-F search for ntgr etc).
- useful for: encoding integer sets of unknown interpretation
- default NArowtype: 'integer'
- ntgr set includes: ord4, retn, 1010, ordl
- ntg2 set includes: ord4, retn, 1010, ordl, pwr2
- ntg3 set includes: ord4, retn, ordl, por2
### Date-Time Data Normalizations
Date time processing transforms are implementations of two master functions: time and tmcs, which accept
various parameters associated with suffix, time scale, and sin/cos periodicity, etc. They segment time stamps by
time scale returned in separate columns. If a particular time scale is not present in training data it is omitted.
* date/dat2: for datetime formatted data, segregates data by time scale to multiple
columns (year/month/day/hour/minute/second) and then performs z-score normalization
- useful for: datetime entries of mixed time scales where periodicity is not relevant
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: includes appenders for (_year, _mnth, _days, _hour, _mint, _scnd)
- assignparam parameters accepted:
- timezone: defaults to False as passthrough, otherwise can pass time zone abbreviation
(useful to consolidate different time zones such as for bus hr bins)
for list of pandas accepted abbreviations see pytz.all_timezones
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: meanyear / stdyear / meanmonth / stdmonth / meanday / stdday /
meanhour / stdhour / meanmint / stdmint / meanscnd / stdscnd
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: pending
* year/mnth/days/hour/mint/scnd: segregated by time scale and z-score normalization
- useful for: datetime entries of single time scale where periodicity is not relevant
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: includes appenders for (_year, _mnth, _days, _hour, _mint, _scnd)
- driftreport postmunge metrics: timemean / timemax / timemin / timestd
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: pending
* mnsn/mncs/dysn/dycs/hrsn/hrcs/misn/mics/scsn/sccs: segregated by time scale and
dual columns with sin and cos transformations for time scale period (e.g. 12 months, 24 hrs, 7 days, etc)
- useful for: datetime entries of single time scale where periodicity is relevant
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: includes appenders for (mnsn/mncs/dysn/dycs/hrsn/hrcs/misn/mics/scsn/sccs)
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: timemean / timemax / timemin / timestd
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: pending
* mdsn/mdcs: similar sin/cos treatment, but for combined month/day, note that periodicity is based on
number of days in specific months, including account for leap year, with 12 month periodicity
- useful for: datetime entries of single time scale combining months and days where periodicity is relevant
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: includes appenders for (mdsn/mdcs)
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: timemean / timemax / timemin / timestd
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: pending
* dhms/dhmc: similar sin/cos treatment, but for combined day/hour/min, with 7 day periodicity
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: includes appenders for (dhms/dhmc)
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: timemean / timemax / timemin / timestd
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: pending
* hmss/hmsc: similar sin/cos treatment, but for combined hour/minute/second, with 24 hour periodicity
- useful for: datetime entries of single time scale combining time scales where periodicity is relevant
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: includes appenders for (hmss/hmsc)
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: timemean / timemax / timemin / timestd
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: pending
* mssn/mscs: similar sin/cos treatment, but for combined minute/second, with 1 hour periodicity
- useful for: datetime entries of single time scale combining time scales below minute threshold where periodicity is relevant
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: includes appenders for (hmss/hmsc)
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: timemean / timemax / timemin / timestd
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: pending
* dat6: default transformation set for time series data, returns:
'year', 'mdsn', 'mdcs', 'hmss', 'hmsc', 'bshr', 'wkdy', 'hldy'
- useful for: datetime entries of multiple time scales where periodicity is relevant, default date-time encoding, includes bins for holidays, business hours, and weekdays
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: includes appenders for ('year', 'mdsn', 'mdcs', 'hmss', 'hmsc', 'bshr', 'wkdy', 'hldy')
- assignparam parameters accepted:
- timezone: defaults to False as passthrough, otherwise can pass time zone abbreviation
(useful to consolidate different time zones such as for bus hr bins)
for list of pandas accepted abbreviations see pytz.all_timezones
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: meanyear / stdyear / mean_mdsn / mean_mdcs / mean_hmss / mean_hmsc
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: pending
### Date-Time Data Bins
* wkdy: boolean identifier indicating whether a datetime object is a weekday
- useful for: supplementing datetime encodings with weekday bins
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: '_wkdy' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: activationratio
- returned datatype: int8
- inversion available: pending
* wkds/wkdo: encoded weekdays 0-6, 'wkds' for one-hot via 'text', 'wkdo' for ordinal via 'ord3'
- useful for: ordinal version of preceding wkdy
- default infill: 7 (e.g. eight days a week)
- default NArowtype: datetime
- suffix appender: '_wkds' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: mon_ratio / tue_ratio / wed_ratio / thr_ratio / fri_ratio / sat_ratio /
sun_ratio / infill_ratio
- returned datatype: wkds as int8, wkdo as uint8
- inversion available: pending
* mnts/mnto: encoded months 1-12, 'mnts' for one-hot via 'text', 'mnto' for ordinal via 'ord3'
- useful for: supplementing datetime encodings with month bins
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: '_mnts' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: infill_ratio / jan_ratio / feb_ratio / mar_ratio / apr_ratio / may_ratio /
jun_ratio / jul_ratio / aug_ratio / sep_ratio / oct_ratio / nov_ratio / dec_ratio
- returned datatype: mnts as int8, mnto as uint8
- inversion available: pending
* bshr: boolean identifier indicating whether a datetime object falls within business
hours (9-5, time zone unaware)
- useful for: supplementing datetime encodings with business hour bins
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: '_bshr' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'start' and 'end', which default to 9 and 17
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: activationratio
- returned datatype: int8
- inversion available: pending
* hldy: boolean identifier indicating whether a datetime object is a US Federal
holiday
- useful for: supplementing datetime encodings with holiday bins
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: '_hldy' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'holiday_list', should be passed as a list of strings of dates of additional holidays to be recognized
e.g. ['2020/03/30']
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: activationratio
- returned datatype: int8
- inversion available: pending
### Differential Privacy Noise Injections
The DP family of transformations are for purposes of stochastic noise injection to train and/or test features. Noise is sampled by default with support of numpy.random (which as of version 1.17.0 defaults to the PCG pseudo random number generator). Supplemental entropy seedings or alternate random samplers can be applied with the automunge(.)/postmunge(.) parameters entropy_seeds and random_generator. The transforms default to injecting noise to training data and not test data, although trainnoise/testnoise parameters can be activated for any combination of the two. For cases where test data injections are not defaulted with the testnoise parameter, test data can be treated as train data for purposes of noise with the postmunge(.) traindata parameter. Please refer to the essay [Noise Injections with Automunge](https://medium.com/automunge/noise-injections-with-automunge-7ebb672216e2) for further detail.
Each of the DP root categories (e.g. DPnb, DPmm, DP**, etc) defaults to injecting noise to train data and not to test data (i.e. trainnoise=True, testnoise=False), however each have otherwise equivalent variations as DT root categories (e.g. DTnb, DTmm, DT**, etc) which default to injecting to test data and not to train data (i.e. trainnoise=False, testnoise=True), or as DB root categories (e.g. DBnb, DBmm, DB**, etc) which default to injecting to both train and test data (i.e. trainnoise=True, testnoise=True). In each case these defaults can be updated by parameter assigment.
Note that when passing parameters to a few of these functions (specifically the hashing variants), the transformation
category associated with the transformation function may be different than the root category, as noted below DPh1/DPh2/DPhs.
Note that DP transforms can be applied in conjunction with the automunge(.) or postmunge(.) noise_augment
parameter to automatically prepare additional concatenated duplicates as a form of data augmentation.
For distribution sampled numeric or weighted sampling categoric categories, the DP transforms have an option to scale different segments of a feature's noise profile to correspond to different attribute segments of an adjacent protected categoric feature, which is expected to benefit loss discrepency for the attributes of that protected feature.
* DPnb: applies a z-score normalization followed by a noise injection to train data sampled
from a Gaussian which defaults to 0 mu and 0.06 sigma, but only to a subset of the data based
on flip_prob parameter.
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream nmbr (as DPn3) cleans data
- default NArowtype: numeric
- suffix appender: '_DPn3_DPnb'
- assignparam parameters accepted:
- 'noisedistribution' as {'normal', 'laplace', 'uniform'}, defaults to normal, used to select between gaussian (normal), laplace, and uniform distributed noise, also accepts one of {'abs_normal', 'abs_laplace', 'abs_uniform', 'negabs_normal', 'negabs_laplace', 'negabs_uniform'}, where the prefix 'abs' refers to injecting only positive noise by taking absolute value of sampled noise, and the prefix negabs refers to injecting only negative noise by taking the negative absolute value of sampled noise
- 'flip_prob' for percent of entries receiving noise injection, defaults to 0.03
- 'mu' for noise mean, defaults to 0
- 'sigma' for noise scale, defaults to 0.06 - note that for uniform sampling high is (sigma-mu) and low is (mu-sigma)
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- parameters should be passed to 'DPnb' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- 'rescale_sigmas': defaults as False, True rescales sigma specifications based on standard deviation of feature in training set (this option intended for use in conjunction with DPne which injects numeric noise without applying a preceding normalization)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_noisedistribution, test_flip_prob, test_mu, test_sigma}, which otherwise default to test_noisedistribution, test_mu, and test_flip_prob matching the train data parameters and test_sigma=0.03
- please note that each of the noise distribution parameters {sigma, flip_prob, test_sigma, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {mu, sigma, flip_prob, test_mu, test_sigma, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- 'protected_feature' defaults to False, accepts input column header string specifiation, scales different segments of this transform's target feature's noise profile to correspond to different attribute segments of specified adjacent protected categoric feature, which the hypothesis is that this may benefit loss discrepency for the attributes of that protected feature
- driftreport postmunge metrics: mu, sigma for DPnm, upstream z score via nmbr for others
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
* DPmm: applies a min-max scaling followed by a noise injection to train data sampled
from a Gaussian which defaults to 0 mu and 0.03 sigma. Note that noise is scaled to ensure output
remains in range 0-1 (by scaling neg noise when scaled input <0.5 and scaling pos noise when scaled input >0.5)
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream mnmx (as DPm2) cleans data
- default NArowtype: numeric
- suffix appender: '_DPm2_DPmm'
- assignparam parameters accepted:
- 'noisedistribution' as {'normal', 'laplace', 'uniform'}, defaults to normal, used to select between gaussian (normal), laplace, and uniform distributed noise, also accepts one of {'abs_normal', 'abs_laplace', 'abs_uniform', 'negabs_normal', 'negabs_laplace', 'negabs_uniform'}, where the prefix 'abs' refers to injecting only positive noise by taking absolute value of sampled noise, and the prefix negabs refers to injecting only negative noise by taking the negative absolute value of sampled noise. *Note that we recommend deactivating parameter noise_scaling_bias_offset in conjunction with abs or negabs scenarios, otherwise the sampled mean will be shifted resulting in noise with zero mean.
- 'flip_prob' for percent of entries receiving noise injection, defaults to 0.03
- 'mu' for noise mean, defaults to 0
- 'sigma' for noise scale, defaults to 0.03 - note that for uniform sampling high is (sigma-mu) and low is (mu-sigma)
- 'noise_scaling_bias_offset', boolean defaulting to True, activates an evaluation of scaled noise to offset the sampled noise mean to closer approximate a resulting zero mean for the scaled noise (helps to mitigate potential for bias from noise scaling in cases of imbalanced feature distribution).
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- parameters should be passed to 'DPmm' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_noisedistribution, test_flip_prob, test_mu, test_sigma}, which otherwise default to test_noisedistribution, test_mu, and test_flip_prob matching the train data parameters and test_sigma=0.02
- please note that each of the noise distribution parameters {sigma, flip_prob, test_sigma, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {mu, sigma, flip_prob, test_mu, test_sigma, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- 'protected_feature' defaults to False, accepts input column header string specifiation, scales different segments of this transform's target feature's noise profile to correspond to different attribute segments of specified adjacent protected categoric feature, which the hypothesis is that this may benefit loss discrepency for the attributes of that protected feature
- driftreport postmunge metrics: mu, sigma for DPnm, upstream minmax via mnmx for others
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
* DPrt: applies a retn normalization with a noise injection to train data sampled
from a Gaussian which defaults to 0 mu and 0.03 sigma. Note that noise is scaled to ensure output
remains in range 0-1 (by scaling neg noise when scaled and centered input <0.5 and scaling pos noise when scaled and centered input >0.5)
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: comparable to retn with mean (calculated before noise injection)
- suffix appender: '_DPrt' in base configuration or based on the family tree category
- assignparam parameters accepted:
- parameters comparable to retn divisor / offset / multiplier / cap / floor / stdev_cap defaulting to 'minmax'/0/1/False/False/False, also
- 'noisedistribution' as {'normal', 'laplace', 'uniform'}, defaults to normal, used to select between gaussian (normal), laplace, and uniform distributed noise, also accepts one of {'abs_normal', 'abs_laplace', 'abs_uniform', 'negabs_normal', 'negabs_laplace', 'negabs_uniform'}, where the prefix 'abs' refers to injecting only positive noise by taking absolute value of sampled noise, and the prefix negabs refers to injecting only negative noise by taking the negative absolute value of sampled noise. *Note that we recommend deactivating parameter noise_scaling_bias_offset in conjunction with abs or negabs scenarios, otherwise the sampled mean will be shifted resulting in noise with zero mean.
- 'mu' for noise mean, defaults to 0,
- 'sigma' for noise scale, defaults to 0.03 - note that for uniform sampling high is (sigma-mu) and low is (mu-sigma)
- 'flip_prob' for percent of entries receiving noise injection, defaults to 0.03
- 'noise_scaling_bias_offset', boolean defaulting to True, activates an evaluation of scaled noise to offset the sampled noise mean to closer approximate a resulting zero mean for the scaled noise (helps to mitigate potential for bias from noise scaling in cases of imbalanced feature distribution)
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- Parameters should be passed to 'DPrt' transformation category from family tree.
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_noisedistribution, test_flip_prob, test_mu, test_sigma}, which otherwise default to test_noisedistribution, test_mu, and test_flip_prob matching the train data parameters and test_sigma=0.02
- please note that each of the noise distribution parameters {sigma, flip_prob, test_sigma, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {mu, sigma, flip_prob, test_mu, test_sigma, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- 'protected_feature' defaults to False, accepts input column header string specifiation, scales different segments of this transform's target feature's noise profile to correspond to different attribute segments of specified adjacent protected categoric feature, which the hypothesis is that this may benefit loss discrepency for the attributes of that protected feature
- driftreport postmunge metrics: mu, sigma, flip_prob for DPrt, also metrics comparable to retn
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
* DLmm/DLnb/DLrt: comparable to DPmm/DPnb/DPrt but defaults to laplace distributed noise instead of gaussian (normal)
with same parameters accepted (where mu is center of noise, sigma is scale, and flip-prob is ratio)
and with same default parameter values
* DPqt/DPbx: numeric noise injections with distribution conversions by the qttf/bxcx transforms
* DPbn: applies a two value binary encoding (bnry) followed by a noise injection to train data which
flips the activation per parameter flip_prob which defaults to 0.03
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream bnry (as DPb2) cleans data
- default NArowtype: justNaN
- suffix appender: '_DPb2_DPbn'
- assignparam parameters accepted:
- 'flip_prob' for percent of activation flips (defaults to 0.03),
- 'weighted' boolean defaults to True for weighted noise sampling from set of unique entries in train data. When False
noise sampling is by a uniform draw from set of unique entries as found in train data (which is a little more computationally efficient).
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- noise injection parameters should be passed to 'DPbn' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_flip_prob, test_weighted}, which otherwise default to test_weighted matching the train data and test_flip_prob = 0.01
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- 'protected_feature' defaults to False, accepts input column header string specifiation, scales different segments of this transform's target feature's noise profile to correspond to different attribute segments of specified adjacent protected categoric feature, which the hypothesis is that this may benefit loss discrepency for the attributes of that protected feature
- driftreport postmunge metrics: flip_prob for DPbn, upstream binary via bnry for others
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
* DPod: applies an ordinal encoding (ord3) followed by a noise injection to train data which
flips the activations per parameter flip_prob which defaults to 0.03 to a weighted random draw from the
set of activations (including the current activation so actual flip percent is < flip_prob based
on number of activations)
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream ord3 (as DPo4) cleans data
- default NArowtype: justNaN
- suffix appender: '_DPo4_DPod'
- assignparam parameters accepted:
- 'flip_prob' for percent of activation flips (defaults to 0.03),
- 'weighted' boolean defaults to True for weighted noise sampling from set of unique entries in train data. When False
noise sampling is by a uniform draw from set of unique entries as found in train data (which is a little more computationally efficient).
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- noise injection parameters should be passed to 'DPod' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- 'passthrough': defaults to False, when True the data type conversion is turned off to allow DPod to be applie for pass-through categoric
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_flip_prob, test_weighted}, which otherwise default to test_weighted matching the train data and test_flip_prob = 0.01
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- 'protected_feature' defaults to False, accepts input column header string specifiation, scales different segments of this transform's target feature's noise profile to correspond to different attribute segments of specified adjacent protected categoric feature, which the hypothesis is that this may benefit loss discrepency for the attributes of that protected feature
- driftreport postmunge metrics: flip_prob for DPod, upstream ordinal via ord3 for others
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes
* DPoh: applies a one hot encoding followed by a noise injection to train data which
flips the activations per parameter flip_prob which defaults to 0.03 to a weighted random draw from the
set of activations (including the current activation so actual flip percent is < flip_prob based
on number of activations). Note that assignparam for noise injection
can be passed directly to DPoh.
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream ord3 (as DPo5) cleans data
- default NArowtype: justNaN
- suffix appender: 'DPo5\_#\_DPoh' where # is integer for each categoric entry
- assignparam parameters accepted:
- 'flip_prob' for percent of activation flips (defaults to 0.03),
- 'weighted' boolean defaults to True for weighted noise sampling from set of unique entries in train data. When False
noise sampling is by a uniform draw from set of unique entries as found in train data (which is a little more computationally efficient).
- 'swap_noise' boolean defaults False, instead of a random flip to alternate activation, randomly samples from feature rows. Has a similar effect as weighted sampling, however when injecting to test data requires multiple samples for comparable effect
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- noise injection parameters should be passed to 'DPo2' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_flip_prob, test_weighted}, which otherwise default to test_weighted matching the train data and test_flip_prob = 0.01
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- 'protected_feature' defaults to False, accepts input column header string specifiation, scales different segments of this transform's target feature's noise profile to correspond to different attribute segments of specified adjacent protected categoric feature, which the hypothesis is that this may benefit loss discrepency for the attributes of that protected feature
- driftreport postmunge metrics: comparable to onht
- returned datatype: int8
- inversion available: yes
* DP10: applies a binarization followed by a noise injection to train data which
flips the activations per parameter flip_prob which defaults to 0.03 to a weighted random draw from the
set of activations (including the current activation so actual flip percent is < flip_prob based
on number of activations). Note that assignparam for noise injection
can be passed directly to DP10.
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream ord3 (as DPo6) cleans data
- default NArowtype: justNaN
- suffix appender: 'DPo6\_#\_DP10' where # is integer for each column which collectively encode categoric entries
- assignparam parameters accepted:
- 'flip_prob' for percent of activation flips (defaults to 0.03),
- 'weighted' boolean defaults to True for weighted noise sampling from set of unique entries in train data. When False
noise sampling is by a uniform draw from set of unique entries as found in train data (which is a little more computationally efficient).
- 'swap_noise' boolean defaults False, instead of a random flip to alternate activation, randomly samples from feature rows. Has a similar effect as weighted sampling, however when injecting to test data requires multiple samples for comparable effect
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- noise injection parameters should be passed to 'DPo3' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_flip_prob, test_weighted}, which otherwise default to test_weighted matching the train data and test_flip_prob = 0.01
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- 'protected_feature' defaults to False, accepts input column header string specifiation, scales different segments of this transform's target feature's noise profile to correspond to different attribute segments of specified adjacent protected categoric feature, which the hypothesis is that this may benefit loss discrepency for the attributes of that protected feature
- driftreport postmunge metrics: comparable to 1010
- returned datatype: int8
- inversion available: yes
* DPh1: applies a multi column hash binarization via hs10 followed by a multi column categoric noise injection via DPmc, which
flips the activation sets per parameter flip_prob which defaults to 0.03 to a weighted random draw from the
set of activation sets (including the current activation set so actual flip percent is < flip_prob based
on number of activations). Note that assignparam for noise injection
can be passed to the intermediate category DPo3 which applies the DPod transform. Defaults to weighted sampling.
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream hs10 cleans data
- default NArowtype: justNaN
- suffix appender: '\DPh1\_#\_DPmc' where # is integer for each column which collectively encode categoric entries
- assignparam parameters accepted:
- 'flip_prob' for percent of activation flips (defaults to 0.03),
- 'swap_noise' boolean defaults False, instead of a random flip to alternate activation, randomly samples from feature rows. Has a similar effect as weighted sampling, however when injecting to test data requires multiple samples for comparable effect
- 'weighted' boolean defaults to True for weighted noise sampling from set of unique entries in train data. When False
noise sampling is by a uniform draw from set of unique entries as found in train data (which is a little more computationally efficient).
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- noise injection parameters should be passed to 'DPmc' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_flip_prob, test_weighted}, which otherwise default to test_weighted matching the train data and test_flip_prob = 0.01
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- 'protected_feature' defaults to False, accepts input column header string specifiation, scales different segments of this transform's target feature's noise profile to correspond to different attribute segments of specified adjacent protected categoric feature, which the hypothesis is that this may benefit loss discrepency for the attributes of that protected feature
- driftreport postmunge metrics: hs10 metrics
- returned datatype: int8
- inversion available: yes
* DPhs: applies a multi column hash binarization via hash followed by a multi column categoric noise injection via mlhs, which
flips the activations in each column individually per parameter flip_prob which defaults to 0.03 to a weighted random draw from the
set of activations (including the current activation so actual flip percent is < flip_prob based
on number of activations). assign_param for mlhs requires passing parameters to DPod through the mlti assignparam norm_params as noted below, and any noise distribution parameters should be redundantly passed to the mlhs call for purposes of setting entropy seeds. For example:
```
assignparam = {'mlhs' :
{'targetinputcolumn' :
{'testnoise' : True,
'norm_params' : {'testnoise' : True}}}}
```
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream hs10 cleans data
- default NArowtype: justNaN
- suffix appender: '\DPhs\_#\_mlhs\_DPod' where # is integer for each column which collectively encode categoric entries
- assignparam parameters accepted:
- 'flip_prob' for percent of activation flips (defaults to 0.03),
- 'weighted' boolean defaults to True for weighted noise sampling from set of unique entries in train data. When False
noise sampling is by a uniform draw from set of unique entries as found in train data (which is a little more computationally efficient).
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- DPod noise injection assignparam parameters can be passed to the mlhs parameter 'norm_params' embedded in a dictionary (e.g. assignparam = {'mlhs' : {inputcolumn : {'norm_params' : {'flip_prob' : 0.05}}}} ) Defaults to weighted sampling. (The norm_params approach is associated with use of the mlti transform which is what mlhs applies)
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_flip_prob, test_weighted}, which otherwise default to test_weighted matching the train data and test_flip_prob = 0.01
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- 'protected_feature' defaults to False, accepts input column header string specifiation, scales different segments of this transform's target feature's noise profile to correspond to different attribute segments of specified adjacent protected categoric feature, which the hypothesis is that this may benefit loss discrepency for the attributes of that protected feature
- driftreport postmunge metrics: hash metrics
- returned datatype: conditional integer based on hashing vocab size
- inversion available: yes
* DPh2: applies a single column hash binarization via hsh2 followed by a single column categoric noise injection via DPod function (as DPo7), which
flips the activations per parameter flip_prob which defaults to 0.03 to a weighted random draw from the
set of activations (including the current activation so actual flip percent is < flip_prob based
on number of activations).
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream hs10 cleans data
- default NArowtype: justNaN
- suffix appender: '\DPh2\_DPo7'
- assignparam parameters accepted:
- 'flip_prob' for percent of activation flips (defaults to 0.03),
- 'weighted' boolean defaults to True for weighted noise sampling from set of unique entries in train data. When False
noise sampling is by a uniform draw from set of unique entries as found in train data (which is a little more computationally efficient).
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- noise injection parameters should be passed to 'DPo7' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_flip_prob, test_weighted}, which otherwise default to test_weighted matching the train data and test_flip_prob = 0.01
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- 'protected_feature' defaults to False, accepts input column header string specifiation, scales different segments of this transform's target feature's noise profile to correspond to different attribute segments of specified adjacent protected categoric feature, which the hypothesis is that this may benefit loss discrepency for the attributes of that protected feature
- driftreport postmunge metrics: hash metrics
- returned datatype: conditional integer based on hashing vocab size
- inversion available: yes
* DPns: applies a z-score normalization via nmbr followed by a swap_noise injection by DPmc, which for noise targets randomly samples between other rows in the feature. Swap noise is an alternate convention than the distribution sampling applied in DPnb.
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream transform cleans data
- default NArowtype: justNaN
- suffix appender: '\DPn4\_DPns'
- assignparam parameters accepted:
- 'flip_prob' for percent of activation flips (defaults to 0.03),
- 'swap_noise' boolean defaults True, randomly samples from rows (we don't recommend the False scenario when applied downstream of continuous features which is intended for injection to categoric features)
- 'weighted' - not supported in conjunction with swap_noise = True
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- noise injection parameters should be passed to 'DPmc' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_flip_prob, test_weighted}, which otherwise default to test_weighted matching the train data and test_flip_prob = 0.01
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- driftreport postmunge metrics: nmbr metrics
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
* DP1s: applies a 1010 binarization followed by a swap_noise injection by DPmc, which for noise targets randomly samples between other rows in the feature. Swap noise is an alternate convention than the weighted sampling applied in DP10.
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream transform cleans data
- default NArowtype: justNaN
- suffix appender: 'DPo8\_#\_DP1s' where # is integer for each column which collectively encode categoric entries
- assignparam parameters accepted:
- 'flip_prob' for percent of activation flips (defaults to 0.03),
- 'swap_noise' boolean defaults True, randomly samples from rows (the False scenario results in an encoding comparable to DP10)
- 'weighted' - not supported in conjunction with swap_noise = True
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- noise injection parameters should be passed to 'DPmc' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_flip_prob, test_weighted}, which otherwise default to test_weighted matching the train data and test_flip_prob = 0.01
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- driftreport postmunge metrics: 1010 metrics
- returned datatype: int8
- inversion available: yes
* DPsk: applies a masking of sampled entries with a mask_value defaulting to the integer 0. As configured in default process_dict specification treats data as full pass-through without NArow aggregation or infill, similar to DPne and DPse noted below. Can also be used to add discrete noise to continuous features by the additive parameter.
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: does notapply infill
- default NArowtype: exclude
- suffix appender: '_DPsk'
- assignparam parameters accepted:
- 'mask_value' the value injected to masked entries, defaults to integer 0
- 'additive' boolean defaults as False, for adding discrete noise to continuous numeric features, results in mask value being added to selected entries instead of replaced
- 'flip_prob' for percent of activation flips (defaults to 0.03),
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- noise injection parameters should be passed to 'DPsk' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_flip_prob}, which otherwise default to test_flip_prob = 0.01
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- driftreport postmunge metrics: mask_value, other noise parameters
- returned datatype: consistent with input
- inversion available: yes
* DPse: for full pass-through other than swap noise injection (i.e. may be applied to numeric or categoric features with string entries). Comparable parameters supported to DPmc (swap_noise defaults to True). Only other edits are suffix appender on the returned column header. Excluded from ML infill and NArw aggregation. DPse may be suitable for incorporating noise injections to categoric test features into a prior prepared pipeline. A similar pass-through transform for numeric features with distribution sampled injections is available as DPne as noted above. Note that this can be applied to multi-column input sets by assigncat specification that replaces a single input header string with a {set} of input header strings.
* DPpc: for full pass-through other than weighted categoric injection (may be applie to categoric features with both numeric and string entries). Comparable parameter support to DPod (passthrough defaults to True). Excluded from ML infill and NArw aggregation. DPpc is an alternate to DPse for passthrough noise to categoric sets that fits the noise weightings to the train data as opposed to mathcing the train or test profile. Also has benefit fo protected_feature support.
* DPmp: similar to DPpc but can be applied to multi-column sets, such as e.g. to inject noise into one hot encoded categoric features. Can be applied to multi-column input sets by assigncat specification that replaces a single input header string with a {set} of input header strings.
* DPne: for full pass-through other than numeric noise injection (i.e. no normalization applied). Comparable parameters supported to DPnb, samples gaussian by default also has laplace support. Note that for DPne the rescale_sigmas option defaults to True such that specified sigma parameters are rescaled by multiplication with the training set standard deviation, thus allowing common default sigma options independant of feature scale. For user specified sigma parameters they will also be rescaled unless rescale_sigmas has been deactivated. Only other edits to returned feature other than noise injection are conversion to float dtype / non numeric to NaN and suffix appender on the returned column header. Excluded from ML infill and NArw aggregation. DPne may be suitable for incorporating noise injections to numeric test features into a prior prepared pipeline. Includes protected_feature support.
Please note that DPse (passthrough swap noise e.g. for categoric), DPne (passthrough gaussian or laplace noise for numeric), DPsk (passthrough mask noise for numeric or categoric), and excl (passthrough without noise) can be used in tandem to pass a dataframe to automunge(.) for noise injection without other edits or infill, such as could be used to incorporate noise into an existing tabular pipeline. When limited to these three root categories the returned dataframe will match the same order of columns with only edits other than noise as updated column headers and DPne will overide any data types other than float. (To retain same order of rows can deactivate shuffletrain parameter.)
### Misc. Functions
* excl: passes source column un-altered, no transforms, data type conversion, or infill. The feature is excluded from ML infill basis of all other features. If a passthrough column is desired to be included in ML infill basis for surrounding features, it should instead be passed to one of the other passthrough transforms, such as exc2 for continuous numeric, exc5 for ordinal encoded integers, or exc8 for continuous integers. Data returned from excl may be non-numeric. excl has a special suffix convention in the library in that the column is returned without a suffix appender (to signify full pass-through), if suffix retention is desired it is available by the automunge(.) excl_suffix parameter.
Note that for assignnan designation of infill conversions, excl is excluded from 'global' assignments
(although may still be assigned explicitly under assignnan columns or categories entries). excl also retains original form of entries that for other transforms are converted to missing data markers, such as None or inf.
- useful for: full passthrough sets
- default infill: none
- default NArowtype: exclude
- suffix appender: None or '\_excl' (dependent on automunge(.) excl_suffix parameter)
- assignparam parameters accepted: none
- driftreport postmunge metrics: none
- returned datatype: retains data type of received data
- inversion available: yes
* exc2/exc3/exc4/exc6: passes source column unaltered other than force to numeric, adjinfill applied
(exc3 and exc4 have downstream standard deviation or power of 10 bins aggregated such as may be beneficial
when applying TrainLabelFreqLevel to a numeric label set). For use without NArw aggregation use exc6/
- useful for: numeric pass-through sets, feature included in surrounding ML infill models
- default infill: adjinfill
- default NArowtype: numeric
- suffix appender: '_exc2' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: none
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
* exc5/exc8: passes source column unaltered other than force to numeric, adjinfill applied for non-integers. exc5 is for ordinal encoded integers, exc8 is for continuous integers. For use without NArw aggregation use exc7/exc9
- useful for: passthrough integer sets, feature included in surrounding ML infill models
- default infill: adjinfill
- default NArowtype: integer
- suffix appender: '_exc5' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- 'integertype': sets the convention for returned datatype exc5 defaults to 'singlct', exc8 defaults to 'integer'
- driftreport postmunge metrics: none
- returned datatype: exc5 is conditional uint based on size of encoding space, exc8 is int32
- inversion available: yes
* eval: performs data property evaluation consistent with default automation to designated column
- useful for: applying automated evaluation to distinct columns for cases where default automated evaluation turned off by powertransform='excl'
- default infill: based on evaluation
- default NArowtype: based on evaluation
- suffix appender: based on evaluation
- assignparam parameters accepted: none
- driftreport postmunge metrics: none
- returned datatype: based on transformation applied
- inversion available: contingent on result
* ptfm: performs distribution property evaluation consistent with the automunge powertransform
parameter activated to designated column
- useful for: applying automated powertransform evaluation to distinct columns
- default infill: based on evaluation
- default NArowtype: based on evaluation
- suffix appender: based on evaluation
- assignparam parameters accepted: none
- driftreport postmunge metrics: none
- returned datatype: based on transformation applied
- inversion available: contingent on result
* copy: create new copy of column, may be used when applying the same transform to same column more
than once with different parameters as an alternate to defining a distinct category processdict entry for each redundant application.
This also may be useful when defining a family tree where the shortest path isn't the desired inversion path, in which case
can add some intermediate copy operations to shortest path until inversion selects the desired path
(as inversion operates on heuristic of selecting shortest transformation path with full information retention,
unless full information retention isn't available then the shortest path without full information retention).
Does not prepare column for ML on its own (e.g. returned data will carry forward non-numeric entries and will not conduct infill).
- default infill: exclude
- default NArowtype: exclude
- suffix appender: '_copy' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: none
- returned datatype: consistent with input
- inversion available: yes
* shfl: shuffles the values of a column based on passed randomseed (Note that returned data may not
be numeric and predictive methods like ML infill and feature selection may not work for that scenario
unless an additional transform is applied downstream.)
- useful for: shuffle useful to negate feature from influencing inference
- default infill: naninfill
- default NArowtype: justNAN
- suffix appender: '_shfl' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: none
- returned datatype: consistent with input
- inversion available: no
* mlti: mlti is a category that may take as input a set of one or more columns returned from an upstream transform, for example this could be a multi-column set returned from a concurrent_nmbr containing multiple columns of continuous numeric entries (or otherwise take a single column input when applied to an upstream primitive). mlti applies a normalization to each of the columns on an independent basis. The normalization defaults to z-score via nmbr or alternate transforms may be designated by assignparam. (Currently mlti is not defined as a root category, but is available for use as a tree category.) mlti is defined in process_dict based on concurrent_nmbr MLinfilltype. mlti may be used to apply an arbitrary transformation category to each column from a set of columns returned from a transform (such as for a concurrent MLinfilltype). The MLinfilltype basis for mlti is concurrent_nmbr, meaning it assumes returned columns are continuous numeric. For concurrent_ordl MLinfilltype can either overwrite processdict or make use of mlto. Returned concurrent_act support is available by overwriting the processdict entry.
- useful for: normalizing a set of numeric features returned from an upstream transform
- default infill: consistent with the type of normalization selected
- default NArowtype: justNaN
- suffix appender: '\_mlti\_' + suffix associated with the normalization
- assignparam parameters accepted:
- 'norm_category': defaults to 'nmbr', used to specify type of normalization applied to each column. Used to access transformation functions from process_dict.
- 'norm_params': defaults to empty dictionary {}, used to pass parameters to the normalization transform, e.g. as {parameter : value}. Note that parameters can also be passed to the norm_category through the assignparam automunge(.) parameter, with any specifications (such as to global_assignparam or default_assignparam) taking precedence over specifications through norm_params.
- 'dtype': accepts one of {'float', 'conditionalinteger', 'mlhs'}, defaults to float. conditionalinteger is for use with mlto. 'mlhs' is for use with mlhs.
- driftreport postmunge metrics: records drift report metrics included with the normalization transform
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: based on normalization transform inversion (if norm_category does not support inversion a passthrough inversion is applied)
* mlto: comparable to mlti but intended for use with returning multiple ordinal encoded columns. mlto is defined in process_dict based on concurrent_ordl MLinfilltype.
- useful for: ordinal encoding a set of categoric features returned from an upstream transform
- default infill: consistent with the type of ordinal encoding selected
- default NArowtype: justNaN
- suffix appender: '\_mlto\_' + suffix associated with the normalization
- assignparam parameters accepted:
- 'norm_category': defaults to 'ord3', used to specify type of ordinal encoding applied to each column. Used to access transformation functions from process_dict.
- 'norm_params': defaults to empty dictionary {}, used to pass parameters to the normalization transform, e.g. as {parameter : value}
- 'dtype': accepts one of {'float', 'conditionalinteger', 'mlhs'}, defaults to conditionalinteger.
- driftreport postmunge metrics: records drift report metrics included with the normalization transform
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: based on normalization transform inversion (if norm_category does not support inversion a passthrough inversion is applied)
* bnst/bnso: intended for use downstream of multicolumn boolean integer sets, such as those returned from MLinfilltype multirt, 1010, concurrent_act. bnst serves to aggregate the multicolumn representation into a single column encoding. bnst returns a string representation, bnso performs a downstream ordinal encoding. Intended for sets with boolean integer entries.
- useful for: some downstream libraries prefer label sets in single column representations. This allows user to convert a multicolumn to single column for this or some other purpose.
- default infill: zeroinfill (assumes infill performed upstream.)
- default NArowtype: justNaN
- suffix appender: '_bnst'
- assignparam parameters accepted:
- suffix: defaults to tree category, accepts string
- upstreaminteger: defaults to True for boolean integer input, when False can receive other single character entries, although inversion not supported for the False scenario
- driftreport postmunge metrics: none
- returned datatype: bnst returns string, bnso conditional integer per downstream ordinal encoding
- inversion available: supported for upstreaminteger True scenario, False performs a passthrough inversion without recovery
* GPS1: for converting sets of GPS coordinates to normalized latitude and longitude, relies on comma separated inputs, with latitude/longitude reported as DDMM.... or DDDMM.... and direction as one of 'N'/'S' or 'E'/'W'. Note that with GPS data, depending on the application, there may be benefit to setting the automunge(.) floatprecision parameter to 64 instead of the default 32. If you want to apply ML infill or some other assigninfill on the returned sets, we recommend ensuring missing data is received as NaN, otherwise missing entries will receive adjinfill.
- useful for: converting GPS coordinates to normalized latitude and normalized longitude
- default infill: adjinfill
- default NArowtype: justNaN
- suffix appender: \_GPS1\_latt\_mlti\_nmbr and \_GPS1\_long\_mlti\_nmbr
- assignparam parameters accepted:
- 'GPS_convention': accept one of {'default', 'nonunique'}, under default all rows are individually parsed. nonunique is used in GPS3 and GPS4.
- 'comma_addresses': accepts as list of 4 integers, defaulting to [2,3,4,5], which corresponds to default where latitude located after comma 2, latitude direction after comma 3, longitude after comma 4, longitude direction after comma 5
- 'comma_count': an integer, defaulting to 14, used in inversion to pad out commas on the recovered data format
- driftreport postmunge metrics: metrics included with the downstream normalization transforms
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with partial recovery e.g. for default configuration recovers data in the form ",,DDMM.MMMMMMM,C,DDMM.MMMMMMM,C,,,,,,,,," (where C is the direction)
* GPS2: comparable to GPS1 but without the downstream normalization, so returns floats in units of arc minutes. (If you want missing data returned as NaN instead of adjinfill, can set process_dict entry NArowtype to 'exclude'.)
* GPS3: comparable to GPS1, including downstream normalization, but only unique entries are parsed instead of all rows. Parses unique entries in both the train and test set. This may benefit latency in cases of redundant entries.
* GPS4: comparable to GPS1, including downstream normalization, but only unique entries are parsed instead of all rows. Parses unique entries in the train set and relies on assumption that the set of unique entries in test set will be the same or a subset of the train set, which may benefit latency for this scenario.
* GPS5: comparable to GPS3 but performs a downstream ordinal encoding instead of normalization, as may be desired when treating a fixed range of GPS coordinates as a categoric feature, latitude and longitude encoded separately.
* GPS6: comparable to GPS3 but performs both a downstream ordinal encoding and a downstream normalization, such as to treat latitude and longitude both as categoric and continuous numeric features. This is probably a better default than GPS3 or GPS5 for fixed range of entries.
* NArw: produces a column of boolean integer identifiers for rows in the source
column with missing or improperly formatted values. Note that when NArw
is assigned in a family tree it bases NArowtype on the root category,
when NArw is passed as the root category it bases NArowtype on default.
- useful for: supplementing any transform with marker for missing entries. On by default by NArw_marker parameter
- default infill: not applicable
- default NArowtype: justNaN
- suffix appender: '_NArw' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: pct_NArw
- returned datatype: int8
- inversion available: no
* NAr2: produces a column of boolean identifiers for rows in the source
column with missing or improperly formatted values.
- useful for: similar to NArw but different default NArwtype for when used as a root category
- default infill: not applicable
- default NArowtype: numeric
- suffix appender: '_NAr2' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: pct_NArw
- returned datatype: int8
- inversion available: no
* NAr3: produces a column of boolean identifiers for rows in the source
column with missing or improperly formatted values.
- useful for: similar to NArw but different default NArwtype for when used as a root category
- default infill: not applicable
- default NArowtype: positivenumeric
- suffix appender: '_NAr3' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: pct_NArw
- returned datatype: int8
- inversion available: no
* NAr4: produces a column of boolean identifiers for rows in the source
column with missing or improperly formatted values.
- useful for: similar to NArw but different default NArwtype for when used as a root category
- default infill: not applicable
- default NArowtype: nonnegativenumeric
- suffix appender: '_NAr4' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: pct_NArw
- returned datatype: int8
- inversion available: no
* NAr5: produces a column of boolean identifiers for rows in the source
column with missing or improperly formatted values.
- useful for: similar to NArw but different default NArwtype for when used as a root category
- default infill: not applicable
- default NArowtype: integer
- suffix appender: '_NAr5' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: pct_NArw
- returned datatype: int8
- inversion available: no
* null: deletes source column
- default infill: none
- default NArowtype: exclude
- no suffix appender, column deleted
- assignparam parameters accepted: none
- driftreport postmunge metrics: none
- returned datatype: N/A
- inversion available: no
### Parsed Categoric Encodings
Please note I recommend caution on using splt/spl2/spl5/spl6 transforms on categorical
sets that may include scientific units for instance, as prefixes will not be noted
for overlaps, e.g. this wouldn't distinguish between kilometer and meter for instance.
Note that overlap lengths below 5 characters are ignored unless that value is overridden
by passing 'minsplit' parameter through assignparam. Further detail on parsed categoric
encodings provided in the essay [Parsed Categoric Encodings with Automunge](https://medium.com/automunge/string-theory-acbd208eb8ca).
* splt: searches categorical sets for overlaps between string character subsets and returns new boolean column
for identified overlap categories. Note this treats numeric values as strings e.g. 1.3 = '1.3'.
Note that priority is given to overlaps of higher length, and by default overlap go down to 5 character length.
- useful for: extracting grammatical structure shared between entries
- default infill: none
- default NArowtype: justNaN
- suffix appender: '\_splt\_##*##' where ##*## is target identified string overlap
- assignparam parameters accepted:
- 'minsplit': indicating lowest character length for recognized overlaps
- 'space_and_punctuation': True/False, defaults to True, when passed as
False character overlaps are not recorded which include space or punctuation
based on characters in excluded_characters parameter
- 'excluded_characters': a list of strings which are excluded from overlap
identification when space_and_punctuation set as False, defaults to
`[' ', ',', '.', '?', '!', '(', ')']`
- 'concurrent_activations': defaults as False, True makes comparable to sp15,
although recommend using sp15 instead for correct MLinfilltype
- 'suffix': returned column suffix appender, defaults to 'splt'
- 'int_headers': True/False, defaults as False, when True returned column headers
are encoded with integers, such as for privacy preserving of data contents
- 'test_same_as_train': defaults False, True makes this comparable to spl8
- driftreport postmunge metrics: overlap_dict / splt_newcolumns_splt / minsplit
- returned datatype: int8
- inversion available: yes with partial recovery
* sp15: similar to splt, but allows concurrent activations for multiple detected overlaps (spelled sp-fifteen)
Note that this version runs risk of high dimensionality of returned data in comparison to splt.
- useful for: extracting grammatical structure shared between entries with increased information retention vs splt
- default infill: none
- default NArowtype: justNaN
- suffix appender: '\_sp15\_##*##' where ##*## is target identified string overlap
- assignparam parameters accepted:
- comparable to splt, with concurrent_activations as True
- driftreport postmunge metrics: overlap_dict / splt_newcolumns_sp15 / minsplit
- returned datatype: int8
- inversion available: yes with partial recovery
* sp19: comparable to sp15, but with returned columns aggregated by a binary encoding to reduce dimensionality
- useful for: extracting grammatical structure shared between entries with decreased dimensionality vs sp15
- default infill: distinct encoding
- default NArowtype: justNaN
- suffix appender: '\_sp19\_#' where # is integer associated with the encoding
- assignparam parameters accepted: comparable to sp15
- driftreport postmunge metrics: comparable to sp15 with addition of _1010_activations_dict for activation ratios
- returned datatype: int8
- inversion available: yes with partial recovery
* sbst: similar to sp15, but only detects string overlaps shared between full unique entries and subsets of longer character length entries
- useful for: extracting cases of overlap between full entries and subsets of other entries
- default infill: none
- default NArowtype: justNaN
- suffix appender: '\_sbst\_##*##' where ##*## is target identified string overlap
- assignparam parameters accepted:
- 'int_headers': True/False, defaults as False, when True returned column headers
are encoded with integers, such as for privacy preserving of data contents
- 'minsplit': indicating lowest character length for recognized overlaps, defaults to 1
- 'concurrent_activations': True/False, defaults to True, when True
entries may have activations for multiple simultaneous overlaps
- 'test_same_as_train': defaults False, True makes this comparable to sbs2
- 'suffix': returned column suffix appender, defaults to 'sbst'
- driftreport postmunge metrics: overlap_dict / splt_newcolumns_sbst / minsplit
- returned datatype: int8
- inversion available: yes with partial recovery
* sbs3: comparable to sbst, but with returned columns aggregated by a binary encoding to reduce dimensionality
- useful for: binary version of sbst for reduced dimensionality
- default infill: distinct encoding
- default NArowtype: justNaN
- suffix appender: '\_sbs3\_#' where # is integer associated with the encoding
- assignparam parameters accepted: comparable to sbst
- driftreport postmunge metrics: comparable to sbst with addition of _1010_activations_dict for activation ratios
- returned datatype: int8
- inversion available: yes with partial recovery
* spl2/ors2/ors6/txt3: similar to splt, but instead of creating new column identifier it replaces categorical
entries with the abbreviated string overlap
- useful for: similar to splt but returns single column, used in aggregations like or19
- default infill: none
- default NArowtype: justNaN
- suffix appender: '_spl2' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'minsplit': indicating lowest character length for recognized overlaps
- 'space_and_punctuation': True/False, defaults to True, when passed as
False character overlaps are not recorded which include space or punctuation
based on characters in excluded_characters parameter
- 'excluded_characters': a list of strings which are excluded from overlap
identification when space_and_punctuation set as False, defaults to
`[' ', ',', '.', '?', '!', '(', ')']`
- 'test_same_as_train': defaults False, True makes this comparable to spl9
- 'suffix': returned column suffix appender, defaults to 'spl2'
- 'consolidate_nonoverlaps': defaults to False, True makes this comparable to spl5
- driftreport postmunge metrics: overlap_dict / spl2_newcolumns / spl2_overlap_dict / spl2_test_overlap_dict /
minsplit
- returned datatype: str (other categoric encodings can be returned downstream to return numeric)
- inversion available: yes with partial recovery
* spl5/ors5: similar to spl2, but those entries without identified string overlap are set to 0,
(used in ors5 in conjunction with ord3)
- useful for: final tier of spl2 aggregations such as in or19
- default infill: none
- default NArowtype: justNaN
- suffix appender: '_spl5' in base configuration or based on the family tree category
- assignparam parameters accepted:
- comparable to spl2, consolidate_nonoverlaps as True
- driftreport postmunge metrics: overlap_dict / spl2_newcolumns / spl2_overlap_dict / spl2_test_overlap_dict /
spl5_zero_dict / minsplit
- returned datatype: str (other categoric encodings can be returned downstream to return numeric)
- inversion available: yes with partial recovery
* spl6: similar to spl5, but with a splt performed downstream for identification of overlaps
within the overlaps
- useful for: just a variation on parsing aggregations
- default infill: none
- default NArowtype: justNaN
- suffix appender: '_spl6' in base configuration or based on the family tree category
- assignparam parameters accepted:
- comparable to spl2
- driftreport postmunge metrics: overlap_dict / spl2_newcolumns / spl2_overlap_dict / spl2_test_overlap_dict /
spl5_zero_dict / minsplit
- returned datatype: int8
- inversion available: yes with partial recovery
* spl7: similar to spl5, but recognizes string character overlaps down to minimum 2 instead of 5
- useful for: just a variation on parsing aggregations
- default infill: none
- default NArowtype: justNaN
- suffix appender: '_spl7' in base configuration or based on the family tree category
- assignparam parameters accepted:
- comparable to spl5, minsplit defaults to 2
- driftreport postmunge metrics: overlap_dict / srch_newcolumns_srch / search
- returned datatype: int8
- inversion available: yes with partial recovery
* srch: searches categorical sets for overlaps with user passed search string and returns new boolean column
for identified overlap entries.
- useful for: identifying specific entry character subsets by search
- default infill: none
- default NArowtype: justNaN
- suffix appender: '\_srch\_##*##' where ##*## is target identified search string
- assignparam parameters accepted:
- 'search': a list of strings, defaults as empty set
(note search parameter list can included embedded lists of terms for
aggregated activations of terms in the sub-list)
- 'case': bool to indicate case sensitivity of search, defaults True
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: overlap_dict / splt_newcolumns_splt / minsplit
- returned datatype: int8
- inversion available: yes with partial recovery
* src2: comparable to srch but expected to be more efficient when target set has narrow range of entries
- useful for: similar to srch slight variation on implementation
- default infill: none
- default NArowtype: justNaN
- suffix appender: '\_src2_##*##' where ##*## is target identified search string
- assignparam parameters accepted:
- 'search': a list of strings, defaults as empty set
(note search parameter list can included embedded lists of terms for
aggregated activations of terms in the sub-list)
- 'case': bool to indicate case sensitivity of search, defaults True
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: overlap_dict / splt_newcolumns_splt / minsplit
- returned datatype: int8
- inversion available: yes with partial recovery
* src3: comparable to src2 with additional support for test set entries not found in train set
* src4: searches categorical sets for overlaps with user passed search string and returns ordinal column
for identified overlap entries. (Note for multiple activations encoding priority given to end of list entries).
- useful for: ordinal version of srch
- default infill: none
- default NArowtype: justNaN
- suffix appender: '\_src4' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'search': a list of strings, defaults as empty set
(note search parameter list can included embedded lists of terms for
aggregated activations of terms in the sub-list)
- 'case': bool to indicate case sensitivity of search, defaults True
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: overlap_dict / splt_newcolumns_splt / minsplit
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with partial recovery
* nmrc/nmr2/nmr3: parses strings and returns any number groupings, prioritized by longest length
- useful for: extracting numeric character subsets of entries
- default infill: mean
- default NArowtype: parsenumeric
- suffix appender: '_nmrc' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: overlap_dict / mean / maximum / minimum
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* nmcm/nmc2/nmc3: similar to nmrc, but recognizes numbers with commas, returns numbers stripped of commas
- useful for: extracting numeric character subsets of entries, recognizes commas
- default infill: mean
- default NArowtype: parsenumeric
- suffix appender: '_nmcm' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: overlap_dict / mean / maximum / minimum
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* nmEU/nmE2/nmE3: similar to nmcm, but recognizes numbers with period or space thousands delimiter and comma decimal
- useful for: extracting numeric character subsets of entries, recognizes EU format
- default infill: mean
- default NArowtype: parsenumeric
- suffix appender: '_nmEU' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: overlap_dict / mean / maximum / minimum
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* strn: parses strings and returns any non-number groupings, prioritized by longest length, followed by ord3 ordinal encoding
- useful for: extracting nonnumeric character subsets of entries
- default infill: naninfill
- default NArowtype: justNaN
- suffix appender: '_strn_ord3'
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: overlap_dict
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: pending
### More Efficient Parsed Categoric Encodings
* new processing functions nmr4/nmr5/nmr6/nmc4/nmc5/nmc6/nmE4/nmE5/nmE6/spl8/spl9/sp10 (spelled sp"ten")/sp16/src2/sbs2/sp20/sbs4:
- comparable to functions nmrc/nmr2/nmr3/nmcm/nmc2/nmc3/nmEU/nmE2/nmE3/splt/spl2/spl5/sp15/srch/sbst/sp19/sbs3
- but make use of new assumption that set of unique values in test set is same or a subset of those values
from the train set, which allows for a more efficient application (no more string parsing of test sets)
- default infill: comparable
- default NArowtype: comparable
- suffix appender: same format, updated per the new category
- assignparam parameters accepted: comparable
- driftreport postmunge metrics: comparable
- returned datatype: comparable
- inversion available: yes
* new processing functions nmr7/nmr8/nmr9/nmc7/nmc8/nmc9/nmE7/nmE8/nmE9:
- comparable to functions nmrc/nmr2/nmr3/nmcm/nmc2/nmc3/nmEU/nmE2/nmE3
- but implements string parsing only for unique test set entries not found in train set
- for more efficient test set processing in automunge and postmunge
- (less efficient than nmr4/nmc4 etc but captures outlier points as may not be unusual in continuous distributions)
- default infill: comparable
- default NArowtype: comparable
- suffix appender: same format, updated per the new category
- assignparam parameters accepted: comparable
- driftreport postmunge metrics: overlap_dict / mean / maximum / minimum / unique_list / maxlength
- returned datatype: comparable
- inversion available: no
### Multi-tier Parsed Categoric Encodings
The following are a few variations of parsed categoric encoding aggregations. We recommend the or19 variant and
have written about in paper [Parsed Categoric Encodings with Automunge](https://medium.com/automunge/string-theory-acbd208eb8ca).
* new processing root categories or11 / or12 / or13 / or14 / or15 / or16 / or17 / or18 / or19 / or20
- or11 / or13 intended for categorical sets that may include multiple tiers of overlaps
and include base binary encoding via 1010 supplemented by tiers of string parsing for
overlaps using spl2 and spl5, or11 has two tiers of overlap string parsing, or13 has three,
each parsing returned with an ordinal encoding sorted by frequency (ord3)
- or12 / or14 are comparable to or11 / or13 but include an additional supplemental
transform of string parsing for numerical entries with nmrc followed by a z-score normalization
of returned numbers via nmbr
- or15 / or16 / or17 / or18 comparable to or11 / or12 / or13 / or14 but incorporate an
UPCS transform upstream and make use of spl9/sp10 instead of spl2/spl5 for assumption that
set of unique values in test set is same or subset of train set for more efficient postmunge
- or19 / or20 comparable to or16 / or18 but replace the 'nmrc' string parsing for numeric entries
with nmc8 which allows comma characters in numbers and makes use of consistent assumption to
spl9/sp10 that set of unique values in test set is same or subset of train for efficient postmunge
- or21 / or22 comparable to or19 / or20 but use spl2/spl5 instead of spl9/sp10,
which allows string parsing to handle test set entries not found in the train set
- or23 similar to or19 but instead of spl2/spl5 chain applies a sp19 for binary encoded string parsing with concurrent activations
- assignparam parameters accepted: 'minsplit': indicating lowest character length for recognized overlaps
(note that parameter has to be assigned to specific categories such as spl2/spl5 etc), also other parameters
associated with constituent functions
- driftreport postmunge metrics: comparable to constituent functions
- inversion available: yes with full recovery
___
### List of Root Categories
Here are those root categories presented again in a concise sorted list, intended as reference so user can
avoid unintentional duplication.
- '1010',
- '101d',
- '10mz',
- 'DB10',
- 'DB1s',
- 'DBb2',
- 'DBbn',
- 'DBbx',
- 'DBh1',
- 'DBh2',
- 'DBhs',
- 'DBm2',
- 'DBmc',
- 'DBmm',
- 'DBmp',
- 'DBn2',
- 'DBn3',
- 'DBn4',
- 'DBnb',
- 'DBne',
- 'DBnm',
- 'DBns',
- 'DBo4',
- 'DBo5',
- 'DBo6',
- 'DBo7',
- 'DBo8',
- 'DBod',
- 'DBoh',
- 'DBqt',
- 'DBrt',
- 'DBse',
- 'DBsk',
- 'DLmm',
- 'DLnb',
- 'DLrt',
- 'DP10',
- 'DP1s',
- 'DPb2',
- 'DPbn',
- 'DPbx',
- 'DPh1',
- 'DPh2',
- 'DPhs',
- 'DPm2',
- 'DPmc',
- 'DPmm',
- 'DPmp',
- 'DPn2',
- 'DPn3',
- 'DPn4',
- 'DPnb',
- 'DPne',
- 'DPnm',
- 'DPns',
- 'DPo4',
- 'DPo5',
- 'DPo6',
- 'DPo7',
- 'DPo8',
- 'DPod',
- 'DPoh',
- 'DPpc',
- 'DPqt',
- 'DPrt',
- 'DPse',
- 'DPsk',
- 'DT10',
- 'DT1s',
- 'DTb2',
- 'DTbn',
- 'DTbx',
- 'DTh1',
- 'DTh2',
- 'DThs',
- 'DTm2',
- 'DTmc',
- 'DTmm',
- 'DTmp',
- 'DTn2',
- 'DTn3',
- 'DTn4',
- 'DTnb',
- 'DTne',
- 'DTnm',
- 'DTns',
- 'DTo4',
- 'DTo5',
- 'DTo6',
- 'DTo7',
- 'DTo8',
- 'DTod',
- 'DToh',
- 'DTqt',
- 'DTrt',
- 'DTse',
- 'DTsk',
- 'GPS1',
- 'GPS2',
- 'GPS3',
- 'GPS4',
- 'GPS5',
- 'GPS6',
- 'MAD2',
- 'MAD3',
- 'MADn',
- 'NAr2',
- 'NAr3',
- 'NAr4',
- 'NAr5',
- 'NArw',
- 'U101',
- 'Ucct',
- 'Uh10',
- 'Uhs2',
- 'Uhsh',
- 'UPCS',
- 'Unht',
- 'Uor2',
- 'Uor3',
- 'Uor6',
- 'Uord',
- 'Utx2',
- 'Utx3',
- 'Utxt',
- 'absl',
- 'addd',
- 'aggt',
- 'arcs',
- 'arsn',
- 'artn',
- 'bins',
- 'bkb3',
- 'bkb4',
- 'bkt1',
- 'bkt2',
- 'bkt3',
- 'bkt4',
- 'bn7b',
- 'bn7o',
- 'bn9b',
- 'bn9o',
- 'bnKo',
- 'bnMo',
- 'bne7',
- 'bne9',
- 'bneb',
- 'bneo',
- 'bnep',
- 'bnKb',
- 'bnMb',
- 'bnr2',
- 'bnrd',
- 'bnry',
- 'bnso',
- 'bnst',
- 'bnwb',
- 'bnwK',
- 'bnwM',
- 'bnwd',
- 'bnwo',
- 'bsbn',
- 'bshr',
- 'bsor',
- 'bxc2',
- 'bxc3',
- 'bxc4',
- 'bxc5',
- 'bxc6',
- 'bxc7',
- 'bxcx',
- 'cnsl',
- 'cns2',
- 'cns3',
- 'copy',
- 'cost',
- 'd2d2',
- 'd2dt',
- 'd3d2',
- 'd3dt',
- 'd4d2',
- 'd4dt',
- 'd5d2',
- 'd5dt',
- 'd6d2',
- 'd6dt',
- 'dat2',
- 'dat3',
- 'dat4',
- 'dat5',
- 'dat6',
- 'datd',
- 'date',
- 'day2',
- 'day3',
- 'day4',
- 'day5',
- 'days',
- 'ddd2',
- 'ddd3',
- 'ddd4',
- 'ddd5',
- 'ddd6',
- 'dddt',
- 'ded2',
- 'ded3',
- 'ded4',
- 'ded5',
- 'ded6',
- 'dedt',
- 'dhmc',
- 'dhms',
- 'divd',
- 'dxd2',
- 'dxdt',
- 'dycs',
- 'dysn',
- 'exc2',
- 'exc3',
- 'exc4',
- 'exc5',
- 'exc6',
- 'exc7',
- 'exc8',
- 'exc9',
- 'excl',
- 'fsmh',
- 'hash',
- 'hldy',
- 'hmsc',
- 'hmss',
- 'hour',
- 'hrcs',
- 'hrs2',
- 'hrs3',
- 'hrs4',
- 'hrsn',
- 'hs10',
- 'hsh2',
- 'lb10',
- 'lbbn',
- 'lbda',
- 'lbfs',
- 'lbnm',
- 'lbo5',
- 'lbor',
- 'lbos',
- 'lbsm',
- 'lbte',
- 'lgn2',
- 'lgnm',
- 'lgnr',
- 'lngt',
- 'lngm',
- 'lnlg',
- 'log0',
- 'log1',
- 'logn',
- 'ma10',
- 'matx',
- 'maxb',
- 'mdcs',
- 'mdsn',
- 'mea2',
- 'mea3',
- 'mean',
- 'mics',
- 'min2',
- 'min3',
- 'min4',
- 'mint',
- 'misn',
- 'mlhs',
- 'mltG',
- 'mlti',
- 'mlto',
- 'mltp',
- 'mmd2',
- 'mmd3',
- 'mmd4',
- 'mmd5',
- 'mmd6',
- 'mmdx',
- 'mmor',
- 'mmq2',
- 'mmqb',
- 'mncs',
- 'mnm2',
- 'mnm3',
- 'mnm4',
- 'mnm5',
- 'mnm6',
- 'mnm7',
- 'mnmx',
- 'mnsn',
- 'mnt2',
- 'mnt3',
- 'mnt4',
- 'mnt5',
- 'mnt6',
- 'mnth',
- 'mnto',
- 'mnts',
- 'mscs',
- 'mssn',
- 'mxab',
- 'nbr2',
- 'nbr3',
- 'nbr4',
- 'nmbd',
- 'nmbr',
- 'nmc2',
- 'nmc3',
- 'nmc4',
- 'nmc5',
- 'nmc6',
- 'nmc7',
- 'nmc8',
- 'nmc9',
- 'nmcm',
- 'nmd2',
- 'nmd3',
- 'nmd4',
- 'nmd5',
- 'nmd6',
- 'nmdx',
- 'nmE2',
- 'nmE3',
- 'nmE4',
- 'nmE5',
- 'nmE6',
- 'nmE7',
- 'nmE8',
- 'nmE9',
- 'nmEU',
- 'nmq2',
- 'nmqb',
- 'nmr2',
- 'nmr3',
- 'nmr4',
- 'nmr5',
- 'nmr6',
- 'nmr7',
- 'nmr8',
- 'nmr9',
- 'nmrc',
- 'ntg2',
- 'ntg3',
- 'ntgr',
- 'nuld',
- 'null',
- 'om10',
- 'onht',
- 'or10',
- 'or11',
- 'or12',
- 'or13',
- 'or14',
- 'or15',
- 'or16',
- 'or17',
- 'or18',
- 'or19',
- 'or20',
- 'or21',
- 'or22',
- 'or23',
- 'or3b',
- 'or3c',
- 'or3d',
- 'ord2',
- 'ord3',
- 'ord4',
- 'ord5',
- 'ordd',
- 'ordl',
- 'ors2',
- 'ors5',
- 'ors6',
- 'ors7',
- 'por2',
- 'por3',
- 'pwbn',
- 'pwor',
- 'pwr2',
- 'pwrs',
- 'qbt1',
- 'qbt2',
- 'qbt3',
- 'qbt4',
- 'qbt5',
- 'qtt1',
- 'qttf',
- 'qtt2',
- 'rais',
- 'retn',
- 'rtb2',
- 'rtbn',
- 'sbs2',
- 'sbs3',
- 'sbs4',
- 'sbst',
- 'sbtr',
- 'sccs',
- 'scn2',
- 'scnd',
- 'scsn',
- 'sgn1',
- 'sgn2',
- 'sgn3',
- 'sgn4',
- 'shf2',
- 'shf3',
- 'shf4',
- 'shf5',
- 'shf6',
- 'shf7',
- 'shf8',
- 'shfl',
- 'shft',
- 'sint',
- 'smth',
- 'sp10',
- 'sp11',
- 'sp12',
- 'sp13',
- 'sp14',
- 'sp15',
- 'sp16',
- 'sp17',
- 'sp18',
- 'sp19',
- 'sp20',
- 'spl2',
- 'spl5',
- 'spl6',
- 'spl7',
- 'spl8',
- 'spl9',
- 'splt',
- 'sqrt',
- 'src2',
- 'src3',
- 'src4',
- 'srch',
- 'strn',
- 'strg',
- 'tant',
- 'texd',
- 'text',
- 'tlbn',
- 'tmzn',
- 'txt2',
- 'txt3',
- 'ucct',
- 'wkdo',
- 'wkds',
- 'wkdy',
- 'yea2',
- 'year'
___
### List of Suffix Appenders
The convention is that each transform returns a derived column or set of columns which are distinguished
from the source column by suffix appenders to the header strings. Note that in cases of root categories
whose family trees include multiple generations, there may be multiple inclusions of different suffix
appenders in a single returned column. A list of included suffix appenders would be too long to include here
since every transformation category serves as a distinct suffix appender. Note that
the transformation functions test for suffix overlap error from creating new column with headers already
present in dataframe and return results in final printouts and postprocess_dict['miscparameters_results']['suffixoverlap_results'].
(Or for comparable validation results for PCA, Binary, and excl transforms see 'PCA_suffixoverlap_results',
'Binary_suffixoverlap_results', 'excl_suffixoverlap_results'.)
___
### Other Reserved Strings
Note that as Automunge applies transformations, new column headers are derived with addition of suffix appenders with leading underscore. There is an edge case where a new column header may be derived matching one already found in the set, which would be a channel for error. All new header configurations are validated for this overlap channel and if found, reported in final printouts and aggregated in the validation result postprocess_dict['miscparameters_results']['suffixoverlap_aggregated_result']. To eliminate risk of column header overlap edge cases, one can pass column headers in df_train that omit the underscore character '\_' or otherwise inspect this validation result upon automunge(.) completion.
- 'Binary__1010_#' / 'Binary__ord3': The columns returned from Binary transform have headers per one of these conventions. Note that if this header is already present in the data, it will instead populate as 'Binary_############_1010_#' / 'Binary_############_ord3' which includes the 12 digit random integer associated with the application number and this adjustment will be reported with validation results.
- 'PCA__#': The columns returned from PCA dimensionality reduction have headers per this convention. Note that if this header is already present in the data, it will instead populate as 'PCA_############_#' which includes the 12 digit random integer associated with the application number and this adjustment will be reported with validation results.
- 'Automunge_index': a reserved column header for index columns returned in ID sets. When automunge(.) is run the returned ID sets are
populated with an index matching order of rows from original returned set, note that if this header is already present in the ID sets
it will instead populate as 'Automunge_index_' + a 12 digit random integer associated with the application number and will be reported with validation results.
Note that results of various validation checks such as for column header overlaps and other potential bugs are returned from
automunge(.) in closing printouts and in the postprocess_dict as postprocess_dict['miscparameters_results'], and returned
from postmunge(.) in the postreports_dict as postreports_dict['pm_miscparameters_results']. (If the function fails to compile
check the printouts.) It is not a requirement, but we also recommend omitting underscore characters in strings used for
transformation category identifiers for interpretation purposes.
___
### Root Category Family Tree Definitions
The family tree definitions reference documentation are now recorded in a separate file in the github repo titled "FamilyTrees.md".
___
## Custom Transformation Functions
Ok another item on the agenda, we're going to demonstrate methods to create custom
transformation functions, such that a user may customize the feature engineering
while building on all of the extremely useful built in features of automunge such
as infill methods including ML infill, feature importance, dimensionality reduction,
preparation for class imbalance oversampling, and perhaps most importantly the
simplest possible way for consistent processing of additional data with just a single
function call. The transformation functions will need to be channeled through pandas
and incorporate a handful of simple data structures, which we'll demonstrate below.
To give a simple example, we'll demonstrate defining a custom transformation for
z-score normalization, with an added parameter of a user configurable multiplier to
demonstrate how we can access parameters passed through assignparam. We'll associate
the transform with a new category we'll call 'newt' which we'll define with entries
passed in the transformdict and processdict data structures.
Let's create a really simple family tree for the new root category 'newt' which
simply creates a column identifying any rows subject to infill (NArw), performs
the z-score normalization we'll define below, and separately aggregates a collection
of standard deviation bins with the 'bins' transform.
```
transformdict = {'newt' : {'parents' : [],
'siblings' : [],
'auntsuncles' : ['newt', 'bins'],
'cousins' : ['NArw'],
'children' : [],
'niecesnephews' : [],
'coworkers' : [],
'friends' : []}}
```
Note that since this newt requires passing normalization parameters derived
from the train set to process the test set, we'll need to create two separate
transformation functions, the first a "custom_train" function that processes
the train set and records normalization parameters, and the second
a "custom_test" that only processes the test set on its own using the parameters
derived during custom_train. (Note that if we don't need properties from the
train set to process the test set we would only need to define a custom_train.)
So what's being demonstrated here is that we're populating a processdict entry
which will pass the custom transformation functions that we'll define below
to associate them with the category for use when that category is entered in one
of the family tree primitives associated with a root category. Note that the entries
for custom_test and custom_inversion are both optional, and info_retention is associated
with the inversion.
```
processdict = {'newt' : {'custom_train' : custom_train_template,
'custom_test' : custom_test_template,
'custom_inversion' : custom_inversion_template,
'info_retention' : True,
'NArowtype' : 'numeric',
'MLinfilltype' : 'numeric'}}
```
Note that for the processdict entry key, shown here as 'newt', the convention in library
is that this key serves as the default suffix appender for columns returned from
the transform unless otherwise specified in assignparam.
Note that for transforms in the custom_train convention, an initial infill is automatically
applied as adjacent cell infill to serve as precursor to ML infill. A user may also specify
by a 'defaultinfill' processdict entry other conventions for this initial infill associated
with the transformation category, as one of {'adjinfill', 'meaninfill', 'medianinfill',
'modeinfill', 'interpinfill', 'lcinfill', 'zeroinfill', 'oneinfill', 'naninfill', 'negzeroinfill'}. naninfill may be suitable
when a custom infill is applied as part of the custom transform. If naninfill retention is
desired for the returned data, either it may be assigned in assigninfill, or the 'NArowtype'
processdict entry can be cast as 'exclude', noting that the latter may interfere with ML infill
unless the feature is excluded from ML infill bases through ML_cmnd['full_exclude'].
Note that for transforms in the custom_train convention, after the transformation function
is applied, a data type casting is performed based on the MLinfilltype
unless deactivated with a dtype_convert processdict entry.
Now we have to define the custom processing functions which we are passing through
the processdict to automunge.
Here we'll define a "custom_train" function intended to process a train set and
derive any properties need to process test data, which will be returned in a dictionary
we'll refer to as the normalization_dict. Note that the normalization_dict can also
be used to store any drift statistics we want to collect for a postmunge driftreport.
The test data can then be prepared with the custom_test we'll demonstrate next
(unless custom_test is omitted in the processdict in which case test data
will be prepared with the same custom_train function).
Now we'll define the function. (Note that if defining for the internal library
an additional self parameter required as first argument.) Note that pandas is available
as pd and numpy as np.
```
def custom_train_template(df, column, normalization_dict):
"""
#Template for a custom_train transformation function to be applied to a train feature set.
#Where if a custom_test entry is not defined then custom_train will be applied to any
#corresponding test feature sets as well (as may be ok when processing the feature in df_test
#doesn't require accessing any train data properties from the normalization_dict).
#Receives a df as a pandas dataframe
#Where df will generally be from df_train (or may also be from df_test when custom_test not specified)
#column is the target column of transform
#which will already have the suffix appender incorporated when this is applied
#normalization_dict is a dictionary pre-populated with any parameters passed in assignparam
#(and also parameters designated in any defaultparams for the associated processdict entry)
#returns the resulting transformed dataframe as df
#returns normalization_dict, which is a dictionary for storing properties derived from train data
#that may then be accessed to consistently transform test data
#note that any desired drift statistics can also be stored in normalization_dict
#e.g. normalization_dict.update({'property' : property})
#(automunge(.) may externally consider normalization_dict keys of 'inplace' or 'newcolumns_list')
#note that prior to this function call
#a datatype casting based on the NArowtype processdict entry may have been performed
#as well as a default infill of adjinfill
#unless infill type otherwise specified in a defaultinfill processdict entry
#note that this default infill is a precursor to ML infill
#note that if this same custom_train is to be applied to both train and test data
#(when custom_test not defined) then the quantity, headers, and order of returned columns
#will need to be consistent independent of data properties
#Note that the assumptions for data type of received data
#Should align with the NArowtype specified in processdict
#Note that the data types and quantity of returned columns
#Will need to align with the MLinfilltype specified in processdict
#note that following this function call a dtype conversion will take place based on MLinfilltype
#unless deactivated with a dtype_convert processdict entry
"""
#As an example, here is the application of z-score normalization
#derived based on the training set mean and standard deviation
#which can accept any kind of numeric data
#so corresponding NArowtype processdict entry can be 'numeric'
#and returns a single column of continuous numeric data
#so corresponding MLinfilltype processdict entry will need to be 'numeric'
#where we'll include the option for a parameter 'multiplier'
#which is an arbitrary example to demonstrate accessing parameters
#basically we check if that parameter had been passed in assignparam or defaultparams
if 'multiplier' in normalization_dict:
multiplier = normalization_dict['multiplier']
#or otherwise assign and save a default value
else:
multiplier = 1
normalization_dict.update({'multiplier' : multiplier})
#Now we measure any properties of the train data used for the transformation
mean = df[column].mean()
stdev = df[column].std()
#It's good practice to ensure numbers used in derivation haven't been derived as nan
#or would result in dividing by zero
if mean != mean:
mean = 0
if stdev != stdev or stdev == 0:
stdev = 1
#In general if that same basis will be needed to process test data we'll store in normalization_dict
normalization_dict.update({'mean' : mean,
'stdev': stdev})
#Optionally we can measure additional drift stats for a postmunge driftreport
#we will also save those in the normalization_dict
minimum = df[column].min()
maximum = df[column].max()
normalization_dict.update({'minimum' : minimum,
'maximum' : maximum})
#Now we can apply the transformation
#The generic formula for z-score normalization is (x - mean) / stdev
#here we incorporate an additional variable as the multiplier parameter (defaults to 1)
df[column] = (df[column] - mean) * multiplier / stdev
#A few clarifications on column management for reference:
#Note that it is ok to return multiple columns
#we recommend naming additional columns as a function of the received column header
#e.g. newcolumn = column + '_' + str(int)
#returned column headers should be strings
#when columns are conditionally created as a function of data properties
#will need to save headers for reference in custom_test
# e.g. normalization_dict.update('newcolumns_list' : [newcolumn]}
#Note that it is ok to delete the received column from dataframe as part of transform if desired
#If any other temporary columns were created as part of transform that aren't returned
#their column headers should be logged as a normalization_dict entry under 'tempcolumns'
# e.g. normalization_dict.update('tempcolumns' : [tempcolumn]}
#we recommend naming non-returned temporary columns with integer headers since other headers will be strings
return df, normalization_dict
```
And then since this is a method that passes values between the train
and test sets, we'll need to define a corresponding "custom_test" function
intended for use on test data.
```
def custom_test_template(df, column, normalization_dict):
"""
#This transform will be applied to a test data feature set
#on a basis of a corresponding custom_train entry
#Such as test data passed to either automunge(.) or postmunge(.)
#Using properties from the train set basis stored in the normalization_dict
#Note that when a custom_test entry is not defined,
#The custom_train entry will instead be applied to both train and test data
#Receives df as a pandas dataframe of test data
#and a string column header (column)
#which will correspond to the column (with suffix appender already included)
#that was passed to custom_train
#Also receives a normalization_dict dictionary
#Which will be the dictionary populated in and returned from custom_train
#note that prior to this function call
#a datatype casting based on the NArowtype processdict entry may have been performed
#as well as a default infill of adjinfill
#unless infill type otherwise specified in a defaultinfill processdict entry
#where convention is that the quantity, headers, and order of returned columns
#will need to match those returned from the corresponding custom_train
"""
#As an example, here is the corresponding z-score normalization
#derived based on the training set mean and standard deviation
#which was populated in a normalization_dict in the custom_train example given above
#Basically the workflow is we access any values needed from the normalization_dict
#apply the transform
#and return the transformed dataframe
#access the train set properties from normalization_dict
mean = normalization_dict['mean']
stdev = normalization_dict['stdev']
multiplier = normalization_dict['multiplier']
#then apply the transformation and return the dataframe
df[column] = (df[column] - mean) * multiplier / stdev
return df
```
And finally here is an example of the convention for inverseprocess functions,
such as may be passed to a processdict entry to support an inversion operation
on a custom transformation function (associated with postmunge(.) inversion parameter).
```
def custom_inversion_template(df, returnedcolumn_list, inputcolumn, normalization_dict):
"""
#User also has the option to define a custom inversion function
#Corresponding to custom_train and custom_test
#Where the function receives a dataframe df
#Containing a post-transform configuration of one or more columns whose headers are
#recorded in returnedcolumn_list
#And this function is for purposes of creating a new column with header inputcolumn
#Which inverts that transformation originally applied to produce those
#columns in returnedcolumn_list
#Here normalization_dict is the same as populated and returned from a corresponding custom_train
#as applied to the train set
#Returns the transformed dataframe df with the addition of a new column as df[inputcolumn]
#Note that the returned dataframe should retain the columns in returnedcolumn_list
#Whose retention will be managed elsewhere
"""
#As an example, here we'll be inverting the z-score normalization
#derived based on the training set mean and standard deviation
#which corresponds to the examples given above
#Basically the workflow is we access any values needed from the normalization_dict
#Initialize the new column inputcolumn
#And use values in the set from returnedcolumn_list to recover values for inputcolumn
#First let's access the values we'll need from the normalization_dict
mean = normalization_dict['mean']
stdev = normalization_dict['stdev']
multiplier = normalization_dict['multiplier']
#Now initialize the inputcolumn
df[inputcolumn] = 0
#So for the example of z-score normalization, we know returnedcolumn_list will only have one entry
#In some other cases transforms may have returned multiple columns
returnedcolumn = returnedcolumn_list[0]
#now we perform the inversion
df[inputcolumn] = (df[returnedcolumn] * stdev / multiplier) + mean
return df
```
Please note that if you included externally initialized functions in an automunge(.) call,
like for custom_train transformation functions, they will need
to be reinitialized by user prior to uploading an externally saved postprocess_dict with pickle
in a new notebook. (This was a design decision for security considerations.) Please note that
if you assign a multicolumn input feature set to a single root category with tree categories in
custom_train convention by assigncat {set} bracket specification e.g. assigncat = {'newt':[{'column1', 'column2'}]} then your custom_train transform will recieve those headers as a list through normalization_dict['messy_data_headers'].
Further details on custom transformations provided in the essay [Custom Transformations with Automunge](https://medium.com/automunge/custom-transformations-with-automunge-ae694c635a7e).
___
## Custom ML Infill Functions
Ok final item on the agenda, we're going to demonstrate methods to create custom
ML infill functions for model training and inference, such that a user may integrate their
own machine learning algorithms into the platform. We have tried to balance our options
for alternate learning libraries from the default random forest, but recognize that
sophisticate hyperparameter tuning is not our forte, so want to leave the option
open for users to integrate their own implementations, such as may be for example built on
top of XGBoost or other learning libraries.
We'll demonstrate here templates for defining training and inference functions for
classification and regression. These functions can be initialized externally and
applied for ML infill and feature importance. Please note that if you included externally
initialized functions in an automunge(.) call, like for customML inference functions
(but not customML training functions), they will need to be reinitialized by user prior to
uploading an externally saved postprocess_dict with pickle in a new notebook. These demonstrations
are shown with scikit Random Forest models for simplicity. Further details on Custom ML is
provided in the essay [Custom ML Infill with Automunge](https://medium.com/automunge/custom-ml-infill-with-automunge-5b31d7cfd4d2).
```
def customML_train_classifier(labels, features, columntype_report, commands, randomseed):
"""
#Template for integrating user defined ML classificaiton training into ML infill
#labels for classification are received as a single column pandas series with header of integer 1
#and entries of str(int) type (i.e. string representations of non-negative integers like '0', '1')
#if user prefers numeric labels, they can apply labels = labels.astype(int)
#features is received as a numerically encoded pandas dataframe
#with categoric entries as boolean integer or ordinal integer
#and may include binarized features
#headers are strings matching the returned convention with suffix appenders
#columntype_report is a dictionary reporting properties of the columns found in features
#a list of categoric features is available as columntype_report['all_categoric']
#a list of of numeric features is available as columntype_report['all_numeric']
#and columntype_report also contains more granular information such as feature set groupings and types
#consistent with the form returned in postprocess_dict['columntype_report']
#commands is received per user specification passed to automunge(.)
#in ML_cmnd['MLinfill_cmnd']['customML_Classifier']
#such as could be a dictionary populated as {'parameter' : value}
#and then could be passed to model training as **commands
#this is the same dictionary received for the corresponding predict function
#so if user intends to pass different commands to both operations they could structure as e.g.
#{'train' : {'parameter1' : value1}, 'predict' : {'parameter2' : value2}}
#and then pass to model training as **commands['train']
#randomseed is received as a randomly sampled integer
#the returned model is saved in postprocess_dict
#and accessed to impute missing data in automunge and again in postmunge
#as channeled through the corresponding customML_predict_classifier
#if model training not successful user can return model as False
#if the function returns a ValueError model will automatically populate as False
"""
model = RandomForestClassifier(**commands)
#labels are received as str(int), for this demonstration will convert to integer
labels = labels.astype(int)
model.fit(features, labels)
return model
def customML_train_regressor(labels, features, columntype_report, commands, randomseed):
"""
#Template for integrating user defined ML regression training into ML infill
#labels for regression are received as a single column pandas series with header of integer 0
#and entries of float type
#commands is received per user specification passed to automunge(.)
#in ML_cmnd['MLinfill_cmnd']['customML_Regressor']
#features, columntype_report, randomseed
#are comparable in form to those documented for the classification template
#the returned model is saved in postprocess_dict
#and accessed to impute missing data in automunge and again in postmunge
#as channeled through the corresponding customML_predict_regressor
#if model training not successful user can return model as False
#Note that if user only wishes to define a single function
#they can use the labels header convention (0/1) to distinguish between
#whether data is served for classification or regression
"""
model = RandomForestRegressor(**commands)
model.fit(features, labels)
return model
def customML_predict_classifier(features, model, commands):
"""
#Template for integrating user defined ML classification inference into ML infill
#features is comparable in form to those features received in the corresponding training operation
#model is the model returned from the corresponding training operation
#commands is the same as received in the corresponding training operation
#infill should be returned as single column numpy array, pandas dataframe, or series (column header is ignored)
#returned infill entry types should either be str(int) or int
"""
infill = model.predict(features)
return infill
def customML_predict_regressor(features, model, commands):
"""
#Template for integrating user defined ML regression inference into ML infill
#features is comparable in form to those features received in the corresponding training operation
#model is the model returned from the corresponding training operation
#commands is the same as received in the corresponding training operation
#infill should be returned as single column numpy array, pandas dataframe, or series (column header is ignored)
#returned infill entry types should be floats or integers
"""
infill = model.predict(features)
return infill
```
Having defined our custom functions, we can then pass them to an automunge(.) call through the ML_cmnd parameter.
We can activate their use by setting ML_cmnd['autoML_type'] = 'customML'. We can pass parameters to our functions
through ML_cmnd['autoML_type']['MLinfill_cmnd']. And we can pass our defined functions through
ML_cmnd['autoML_type']['customML'].
```
ML_cmnd = {'autoML_type' : 'customML',
'MLinfill_cmnd' : {'customML_Classifier':{'parameter1' : value1},
'customML_Regressor' :{'parameter2' : value2}},
'customML' : {'customML_Classifier_train' : customML_train_classifier,
'customML_Classifier_predict': customML_predict_classifier,
'customML_Regressor_train' : customML_train_regressor,
'customML_Regressor_predict' : customML_predict_regressor}}
```
Please note that for customML autoML_type, feature importance in postmunge is performed with the default random forest. (This was a design decision that benefits privacy of custom model training when sharing postprocess_dict with third party, this way only customML inference needs to be re-initialized when uploading postprocess_dict in a separate notebook.)
Note that the library has an internal suite of inference functions for different ML libraries
that can optionally be used in place of a user defined customML inference function. These can
be activated by passing a string to entries for 'customML_Classifier_predict' or 'customML_Regressor_predict'
as one of {'tensorflow', 'xgboost', 'catboost', 'flaml', 'randomforest'}. Use of the
internally defined inference functions allows a user to upload a postprocess_dict in a separate notebook
without needing to first reinitialize the customML inference functions. For example, to apply a
default inference function for the XGBoost library could apply:
```
ML_cmnd = {'autoML_type' : 'customML',
'MLinfill_cmnd' : {'customML_Classifier':{'parameter1' : value1},
'customML_Regressor' :{'parameter2' : value2}},
'customML' : {'customML_Classifier_train' : customML_train_classifier,
'customML_Classifier_predict': 'xgboost',
'customML_Regressor_train' : customML_train_regressor,
'customML_Regressor_predict' : 'xgboost'}}
```
And thus ML infill can run with any tabular learning library or algorithm. BYOML.
___
## Final Model Training
* Please note that Automunge with 8.13 introduced what is currently an experimental implementation for final model training and inference. For example, they are well suited for training a final model in conjunction with our optuna_XG1 hyperparameter tuner using the same ML_cmnd API to select tuning options. Note that this option can apply a different model architecture or tuning options than those used for ML infill.
- automodel(.) accepts a training set and postprocess_dict as returned from automunge(.) to automatically train a model which is saved in the postprocess_dict
- autoinference(.) accepts a test set prepared in automunge(.) or postmunge(.) and a postprocess_dict which has been populated by automodel and returns the results of inference.
- Note that when a model from automodel(.) is populated in a postprocess_dict, then when additional test data is prepared with that postprocess_dict in postmunge(.), if the test set does not include label features, then autoinference will automatically be called within postmunge(.) with the results of inference returned in the returned labels set we call test_labels.
Here is an example of an automodel pipeline using gradient boosting with optuna tuning to train the final model and then running inference in postmunge:
```
#prepare data for ML
train, train_ID, labels, \
val, val_ID, val_labels, \
test, test_ID, test_labels, \
postprocess_dict = \
am.automunge(df_train,
labels_column = labels_column)
#Set final model XGBoost tuning parameters for Optuna Bayesian tuning
ML_cmnd = {'autoML_type' : 'xgboost',
# 'xgboost_gpu_id' : 0,
'hyperparam_tuner' : 'optuna_XG1',
'optuna_n_iter' : 1000,
'optuna_timeout' : 3600,
'optuna_kfolds' : 5,
'optuna_fasttune' : True,
'optuna_early_stop': 150,
'optuna_max_depth_tuning_stepsize' : 1,
}
#train final model with automodel which will be saved in postprocess_dict
postprocess_dict = \
am.automodel(train, labels, postprocess_dict,
ML_cmnd = ML_cmnd, encrypt_key = False,
printstatus = True, randomseed = False)
#optional: download postprocess_dict with pickle
#can either run inference to raw data in postmunge
#or directly to encoded data with autoinference
#here we demonstrate running inference on validation data with autoinference
#followed by running inference on raw test data with postmunge
#run inference on encoded data with autoinference, here shown on validation data
val_predictions = \
am.autoinference(val, postprocess_dict, encrypt_key = False,
printstatus = True, randomseed = False)
#run inference on raw test data with postmunge
#note predictions will be returned as test_labels
test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict, df_test)
#optionally can invert the encoded predictions back to original form of labels
df_invert, recovered_list, inversion_info_dict = \
am.postmunge(postprocess_dict, test_labels, inversion='labels')
```
We consider the final model functions automodel(.) and autoinference(.) in Beta.
___
## Conclusion
And there you have it; you now have all you need to prepare data for
machine learning with the Automunge platform. Feedback is welcome.
...
As a citation, please note that the Automunge package makes use of
the Pandas, Scikit-learn, SciPy stats, and NumPy libraries. In addition
to the default of Scikit-learn's Random Forest predictive models,
Automunge also has options for ML infill using the CatBoost, FLAML,
or XGboost libraries, and includes a hyperparameter tuning option by
the Optuna library.
Wes McKinney. Data Structures for Statistical Computing in Python,
Proceedings of the 9th Python in Science Conference, 51-56 (2010)
[publisher
link](http://conference.scipy.org/proceedings/scipy2010/mckinney.html)
Fabian Pedregosa, Gaël Varoquaux, Alexandre Gramfort, Vincent Michel,
Bertrand Thirion, Olivier Grisel, Mathieu Blondel, Peter Prettenhofer,
Ron Weiss, Vincent Dubourg, Jake Vanderplas, Alexandre Passos, David
Cournapeau, Matthieu Brucher, Matthieu Perrot, Édouard Duchesnay.
Scikit-learn: Machine Learning in Python, Journal of Machine Learning
Research, 12, 2825-2830 (2011) [publisher
link](http://jmlr.org/papers/v12/pedregosa11a.html)
Pauli Virtanen, Ralf Gommers, Travis E. Oliphant, Matt Haberland, Tyler
Reddy, David Cournapeau, Evgeni Burovski, Pearu Peterson, Warren
Weckesser, Jonathan Bright, St ́efan J. van der Walt, Matthew Brett,
Joshua Wilson, K. Jarrod Millman, Nikolay Mayorov, Andrew R. J. Nelson,
Eric Jones, Robert Kern, Eric Larson, CJ Carey, Ilhan Polat, Yu Feng,
Eric W. Moore, Jake Vand erPlas, Denis Laxalde, Josef Perktold, Robert
Cim- rman, Ian Henriksen, E. A. Quintero, Charles R Harris, Anne M.
Archibald, Antˆonio H. Ribeiro, Fabian Pedregosa, Paul van Mulbregt, and
SciPy 1. 0 Contributors. SciPy 1.0: Fundamental Algorithms for Scientific
Computing in Python. Nature Methods, 17:261– 272, 2020.
doi: https://doi.org/10.1038/s41592-019-0686-2.
S. van der Walt, S. Colbert, and G. Varoquaux. The numpy array: A
structure for efficient numerical computation. Computing in Science
& Engineering, 13:22–30, 2011.
Anna Veronika Dorogush, Vasily Ershov, Andrey Gulin. CatBoost: gradient
boosting with categorical features support [arXiv:1810.11363](https://arxiv.org/abs/1810.11363)
Chi Wang, Qingyun Wu, Markus Weimer, Erkang Zhu. FLAML: A Fast and Lightweight AutoML Library
[arXiv:1911.04706](https://arxiv.org/abs/1911.04706)
Tianqi Chen, Carlos Guestrin. XGBoost: A Scalable Tree Boosting System
[arXiv:1603.02754](https://arxiv.org/abs/1603.02754)
Takuya Akiba, Shotaro Sano, Toshihiko Yanase, Takeru Ohta, Masanori Koyama. Optuna: A Next-generation Hyperparameter Optimization Framework. Proceedings of the 25th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (2019). [arXiv:1907.10902](https://arxiv.org/abs/1907.10902#)
...
Please note that this list of citations is not exhaustive, we have had several additional influences that are cited in the papers of the [Automunge Medium Publication](https://medium.com/automunge).
...
As a quick clarification on the various permutations of the term “Automunge” used in codebase:
Automunge - The name of the library which prepares data for machine learning. Note that Automunge Inc. is doing business as Automunge. Note that imports are conducted by “pip install Automunge”. Note that Automunge is also the name of a folder in the GitHub repository. "Automunge" is a registered trademark.
AutoMunge - name of a defined class in the Automunge library. Note that jupyter notebook initializations are recommended as
```
from Automunge import *
am = AutoMunge()
```
Note that AutoMunge is also used as the title of a GitHub repository published by the Automunge account where we have been sharing code.
Automunger - name of a file published in GitHub repository (as Automunger.py) which is saved in the folder titled Automunge
automunge(.) - name of a function defined in the AutoMunge class in the Automunge library which is the central interface for initial preparations of data.
postmunge(.) - name of a function defined in the AutoMunge class in the Automunge library which is the central interface for subsequent preparations of additional data on the same basis.
...
Please note that the pickle library has a security vulnerability when loading an object of unknown origin. We do not use pickle in our codebase but suggested use above for downloading a returned postprocess_dict because of its ability to serialize and download arbitrary python objects. If you intend to distribute a pickled postprocess_dict publicly, the [python docs](https://docs.python.org/3/library/pickle.html) suggest signing the data with [hmac](https://docs.python.org/3/library/hmac.html#module-hmac) to ensure that it has not been tampered with.
...
Please note that Automunge imports make use of the Pandas, Scikit-Learn, Numpy, and Scipy Stats libraries
which are released under a 3-Clause BSD license. We include options that may import the
Catboost or XGBoost libraries which are released under the Apache License 2.0, as well as options for the FLAML and Optuna libraries which are released under a MIT License.
...
Have fun munging!!
...
You can read more about the tool through the blog posts documenting the
development online at the [Automunge Medium Publication](https://medium.com/automunge)
or for more writing there is a related collection of essays titled [From
the Diaries of John Henry](https://turingsquared.com).
The Automunge website is helpfully located at
[automunge.com](https://automunge.com).
If you are looking for something to cite, our paper [Tabular Engineering with Automunge](https://datacentricai.org/papers/15_CameraReady_TabularEngineering_102621_Final.pdf) was accepted to the 2021 NeurIPS Data-Centric AI workshop.
...
This file is part of Automunge which is released under the BSD-3-Clause license.
See file LICENSE or go to https://github.com/Automunge/AutoMunge for full license details.
contact available via [automunge.com](https://automunge.com)
Copyright (C) 2018, 2019, 2020, 2021, 2022, 2023 - All Rights Reserved
Patent Pending
%package help
Summary: Development documents and examples for Automunge
Provides: python3-Automunge-doc
%description help
# Automunge

#
## Table of Contents
* [Introduction](https://github.com/Automunge/AutoMunge#introduction)
* [Install, Initialize, and Basics](https://github.com/Automunge/AutoMunge#install-initialize-and-basics)
___
* [automunge(.)](https://github.com/Automunge/AutoMunge#automunge-1)
* [automunge(.) returned sets](https://github.com/Automunge/AutoMunge#automunge-returned-sets)
* [automunge(.) passed parameters](https://github.com/Automunge/AutoMunge#automunge-passed-parameters)
___
* [postmunge(.)](https://github.com/Automunge/AutoMunge#postmunge)
* [postmunge(.) returned sets](https://github.com/Automunge/AutoMunge#postmunge-returned-sets)
* [postmunge(.) passed parameters](https://github.com/Automunge/AutoMunge#postmunge-passed-parameters)
___
* [Default Transformations](https://github.com/Automunge/AutoMunge#default-transformations)
* [Library of Transformations](https://github.com/Automunge/AutoMunge#library-of-transformations)
* [Custom Transformation Functions](https://github.com/Automunge/AutoMunge#custom-transformation-functions)
* [Custom ML Infill Functions](https://github.com/Automunge/AutoMunge#custom-ml-infill-functions)
* [Final Model Training](https://github.com/Automunge/AutoMunge#final-model-training)
___
* [Conclusion](https://github.com/Automunge/AutoMunge#conclusion)
___
## Introduction
[Automunge](https://automunge.com) is an open source python library that has formalized and automated the data preparations for tabular learning in between the workflow boundaries of received “tidy data” (one column per feature and one row per sample) and returned dataframes suitable for the direct application of machine learning. Under automation numeric features are normalized, categoric features are binarized, and missing data is imputed. Data transformations are fit to properties of a training set for a consistent basis on any partitioned “validation data” or additional “test data”. When preparing training data, a compact python dictionary is returned recording the steps and parameters of transformation, which then may serve as a key for preparing additional data on a consistent basis.
> In other words, put simply:<br/>
> - **automunge(.)** prepares tabular data for machine learning with encodings, missing data infill, and may channel stochastic perturbations into features<br/>
> - **postmunge(.)** consistently prepares additional data very efficiently<br/>
>
> We make machine learning easy.
In addition to data preparations under automation, Automunge may also serve as a platform for engineering data pipelines. An extensive internal library of univariate transformations includes options like numeric translations, bin aggregations, date-time encodings, noise injections, categoric encodings, and even “parsed categoric encodings” in which categoric strings are vectorized based on shared grammatical structure between entries. Feature transformations may be mixed and matched in sets that include generations and branches of derivations by use of our “family tree primitives”. Feature transformations fit to properties of a training set may be custom defined from a very simple template for incorporation into a pipeline. Dimensionality reductions may be applied, such as by principal component analysis, feature importance rankings, or categoric consolidations. Missing data receives “ML infill”, in which models are trained for a feature to impute missing entries based on properties of the surrounding features. Random sampling may be channeled into features as stochastic perturbations.
Be sure to check out our [Tutorial Notebooks](https://github.com/Automunge/AutoMunge/tree/master/Tutorials). If you are looking for something to cite, our paper [Tabular Engineering with Automunge](https://datacentricai.org/papers/15_CameraReady_TabularEngineering_102621_Final.pdf) was accepted to the Data-Centric AI workshop at NeurIPS 2021.
## Install, Initialize, and Basics
Automunge is now available for pip install:
```
pip install Automunge
```
Or to upgrade:
```
pip install Automunge --upgrade
```
Once installed, run this in a local session to initialize:
```
from Automunge import *
am = AutoMunge()
```
Where e.g. for train set processing with default parameters run:
```
train, train_ID, labels, \
val, val_ID, val_labels, \
test, test_ID, test_labels, \
postprocess_dict = \
am.automunge(df_train)
```
Importantly, if the df_train set passed to automunge(.) includes a column
intended for use as labels, it should be designated with the labels_column
parameter.
Or for subsequent consistent processing of train or test data, using the
dictionary returned from original application of automunge(.), run:
```
test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict, df_test)
```
I find it helpful to pass these functions with the full range of arguments
included for reference, thus a user may simply copy and past this form.
```
#for automunge(.) function on original train and test data
train, train_ID, labels, \
val, val_ID, val_labels, \
test, test_ID, test_labels, \
postprocess_dict = \
am.automunge(df_train, df_test = False,
labels_column = False, trainID_column = False, testID_column = False,
valpercent=0.0, floatprecision = 32, cat_type = False, shuffletrain = True, noise_augment = 0,
dupl_rows = False, TrainLabelFreqLevel = False, powertransform = False, binstransform = False,
MLinfill = True, infilliterate=1, randomseed = False, eval_ratio = .5,
numbercategoryheuristic = 255, pandasoutput = 'dataframe', NArw_marker = True,
featureselection = False, featurethreshold = 0., inplace = False, orig_headers = False,
Binary = False, PCAn_components = False, PCAexcl = [], excl_suffix = False,
ML_cmnd = {'autoML_type':'randomforest',
'MLinfill_cmnd':{'RandomForestClassifier':{}, 'RandomForestRegressor':{}},
'PCA_type':'default',
'PCA_cmnd':{}},
assigncat = {'1010':[], 'onht':[], 'ordl':[], 'bnry':[], 'hash':[], 'hsh2':[],
'DP10':[], 'DPoh':[], 'DPod':[], 'DPbn':[], 'DPhs':[], 'DPh2':[],
'nmbr':[], 'mnmx':[], 'retn':[], 'DPnb':[], 'DPmm':[], 'DPrt':[],
'bins':[], 'pwr2':[], 'bnep':[], 'bsor':[], 'por2':[], 'bneo':[],
'ntgr':[], 'srch':[], 'or19':[], 'tlbn':[], 'excl':[], 'exc2':[]},
assignparam = {'global_assignparam' : {'(parameter)': 42},
'default_assignparam' : {'(category)' : {'(parameter)' : 42}},
'(category)' : {'(column)' : {'(parameter)' : 42}}},
assigninfill = {'stdrdinfill':[], 'MLinfill':[], 'zeroinfill':[], 'oneinfill':[],
'adjinfill':[], 'meaninfill':[], 'medianinfill':[], 'negzeroinfill':[],
'interpinfill':[], 'modeinfill':[], 'lcinfill':[], 'naninfill':[]},
assignnan = {'categories':{}, 'columns':{}, 'global':[]},
transformdict = {}, processdict = {}, evalcat = False, ppd_append = False,
entropy_seeds = False, random_generator = False, sampling_dict = False,
privacy_encode = False, encrypt_key = False, printstatus = 'summary', logger = {})
```
Please remember to save the automunge(.) returned object postprocess_dict
such as using pickle library, which can then be later passed to the postmunge(.)
function to consistently prepare subsequently available data.
```
#Sample pickle code:
#sample code to download postprocess_dict dictionary returned from automunge(.)
import pickle
with open('filename.pickle', 'wb') as handle:
pickle.dump(postprocess_dict, handle, protocol=pickle.HIGHEST_PROTOCOL)
#to upload for later use in postmunge(.) in another notebook
import pickle
with open('filename.pickle', 'rb') as handle:
postprocess_dict = pickle.load(handle)
#Please note that if you included externally initialized functions in an automunge(.) call
#like for custom_train transformation functions or customML inference functions
#they will need to be reinitialized prior to uploading the postprocess_dict with pickle.
```
We can then apply the postprocess_dict saved from a prior application of automunge
for consistent processing of additional data.
```
#for postmunge(.) function on additional available train or test data
#using the postprocess_dict object returned from original automunge(.) application
test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict, df_test,
testID_column = False,
pandasoutput = 'dataframe', printstatus = 'summary',
dupl_rows = False, TrainLabelFreqLevel = False,
featureeval = False, traindata = False, noise_augment = 0,
driftreport = False, inversion = False,
returnedsets = True, shuffletrain = False,
entropy_seeds = False, random_generator = False, sampling_dict = False,
randomseed = False, encrypt_key = False, logger = {})
```
The functions accept pandas dataframe or numpy array input and return encoded dataframes
with consistent order of columns between train and test data.
(For input numpy arrays any label column should be positioned as final column in set.)
The functions return data with categoric features translated to numerical encodings
and normalized numeric such as to make them suitable for direct application to a
machine learning model in the framework of a user's choice, including sets for
the various activities of a generic machine learning project such as training (train),
validation (val), and inference (test). The automunge(.) function also returns a
python dictionary (the "postprocess_dict") that can be used as a key to prepare additional
data with postmunge(.).
When left to automation, automunge(.) evaluates properties of a feature to select
the type of encoding, for example whether a column is numeric, categoric, high cardinality,
binary, date time, etc. Alternately, a user can
assign specific processing functions to distinct columns (via assigncat parameter) -
which may be pulled from the internal [Library of Transformations](https://github.com/Automunge/AutoMunge#library-of-transformations) or alternately [custom
defined](https://github.com/Automunge/AutoMunge#custom-transformation-functions).
The feature engineering transformations are recorded with suffixes
appended to the column header title in the returned sets, for one example the
application of z-score normalization returns a column with header origname + '\_nmbr'.
As another example, for binary encoded sets the set of columns are returned with
header origname + '\_1010_#' where # is integer to distinguish columns in same set.
In most cases, the suffix appenders are derived from the transformation category
identifier (which is by convention a 4 letter string).
The default transforms applied under automation are detailed below in section
[Default Transforms](https://github.com/Automunge/AutoMunge#default-transformations).
Missing data receives ML infill (defaulting to random forest models) and missing marker aggregation.
Other features of the library are detailed in the [tutorial notebooks](https://github.com/Automunge/AutoMunge/tree/master/Tutorials)
and with their associated parameters below.
Other options available in the library include feature importance (via featureselection parameter),
oversampling (via the TrainLabelFreqLevel parameter), dimensionality reductions (via PCAn_components, Binary, or featurethreshold parameters), and stochastic perturbations (by the DP family of transformations detailed in the library of transformations and tutorials). Further detail provided with parameter writeups below.
Note that there is a potential source of error if the returned column header
title strings, which will include suffix appenders based on transformations applied,
match any of the original column header titles passed to automunge. This is an edge
case not expected to occur in common practice and will return error message at
conclusion of printouts and a logged validation result as postprocess_dict['miscparameters_results']['suffixoverlap_aggregated_result']. This channel can
be eliminated by omitting the underscore character in received column headers.
Please note that we consider the postmunge(.) latency a key performance
metric since it is the function that may be called under repetition in production.
The automunge(.) latency can be improved by manual assignment of root categories with the assigncat parameter
or by deactivating ML infill with the MLinfill parameter.
## automunge(.)
The application of the automunge and postmunge functions requires the
assignment of the function to a series of named sets. We suggest using
consistent naming convention as follows:
```
#first you'll need to initialize
from Automunge import *
am = AutoMunge()
#then to run with default parameters
train, train_ID, labels, \
val, val_ID, val_labels, \
test, test_ID, test_labels, \
postprocess_dict = \
am.automunge(df_train)
```
The full set of parameters available to be passed are given here, with
explanations provided below:
```
#first you'll need to initialize
from Automunge import *
am = AutoMunge()
#then if you want you can copy paste following to view all of parameter options
#where df_train is the target training data set to be prepared
train, train_ID, labels, \
val, val_ID, val_labels, \
test, test_ID, test_labels, \
postprocess_dict = \
am.automunge(df_train, df_test = False,
labels_column = False, trainID_column = False, testID_column = False,
valpercent=0.0, floatprecision = 32, cat_type = False, shuffletrain = True, noise_augment = 0,
dupl_rows = False, TrainLabelFreqLevel = False, powertransform = False, binstransform = False,
MLinfill = True, infilliterate=1, randomseed = False, eval_ratio = .5,
numbercategoryheuristic = 255, pandasoutput = 'dataframe', NArw_marker = True,
featureselection = False, featurethreshold = 0., inplace = False, orig_headers = False,
Binary = False, PCAn_components = False, PCAexcl = [], excl_suffix = False,
ML_cmnd = {'autoML_type':'randomforest',
'MLinfill_cmnd':{'RandomForestClassifier':{}, 'RandomForestRegressor':{}},
'PCA_type':'default',
'PCA_cmnd':{}},
assigncat = {'1010':[], 'onht':[], 'ordl':[], 'bnry':[], 'hash':[], 'hsh2':[],
'DP10':[], 'DPoh':[], 'DPod':[], 'DPbn':[], 'DPhs':[], 'DPh2':[],
'nmbr':[], 'mnmx':[], 'retn':[], 'DPnb':[], 'DPmm':[], 'DPrt':[],
'bins':[], 'pwr2':[], 'bnep':[], 'bsor':[], 'por2':[], 'bneo':[],
'ntgr':[], 'srch':[], 'or19':[], 'tlbn':[], 'excl':[], 'exc2':[]},
assignparam = {'global_assignparam' : {'(parameter)': 42},
'default_assignparam' : {'(category)' : {'(parameter)' : 42}},
'(category)' : {'(column)' : {'(parameter)' : 42}}},
assigninfill = {'stdrdinfill':[], 'MLinfill':[], 'zeroinfill':[], 'oneinfill':[],
'adjinfill':[], 'meaninfill':[], 'medianinfill':[],
'interpinfill':[], 'modeinfill':[], 'lcinfill':[], 'naninfill':[]},
assignnan = {'categories':{}, 'columns':{}, 'global':[]},
transformdict = {}, processdict = {}, evalcat = False, ppd_append = False,
entropy_seeds = False, random_generator = False, sampling_dict = False,
privacy_encode = False, encrypt_key = False, printstatus = 'summary', logger = {})
```
Or for the postmunge function:
```
#for postmunge(.) function on additional or subsequently available test (or train) data
#using the postprocess_dict object returned from original automunge(.) application
#first you'll need to initialize
from Automunge import *
am = AutoMunge()
#then to run with default parameters
test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict, df_test)
```
With the full set of arguments available to be passed as:
```
#first you'll need to initialize
from Automunge import *
am = AutoMunge()
#then if you want you can copy paste following to view all of parameter options
#here postprocess_dict was returned from corresponding automunge(.) call
#and df_test is the target data set to be prepared
test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict, df_test,
testID_column = False,
pandasoutput = 'dataframe', printstatus = 'summary', inplace = False,
dupl_rows = False, TrainLabelFreqLevel = False,
featureeval = False, traindata = False, noise_augment = 0,
driftreport = False, inversion = False,
returnedsets = True, shuffletrain = False,
entropy_seeds = False, random_generator = False, sampling_dict = False,
randomseed = False, encrypt_key = False, logger = {})
```
Note that the only required argument to the automunge function is the
train set dataframe, the other arguments all have default values if
nothing is passed. The postmunge function requires as minimum the
postprocess_dict object (a python dictionary returned from the application of
automunge) and a dataframe test set consistently formatted as those sets
that were originally applied to automunge.
...
Here now are descriptions for the returned sets from automunge, which
will be followed by descriptions of the parameters which can be passed to
the function, followed by similar treatment for postmunge returned sets
and arguments. Further below is documentation for the library of transformations.
...
## automunge(.) returned sets:
Automunge defaults to returning data sets as pandas dataframes, or for
single column sets as pandas series.
For dataframes, data types of returned columns are based on the transformation applied,
for example columns with boolean integers are cast as int8, ordinal encoded
columns are given a conditional type based on the size of encoding space as either
uint8, uint16, or uint32. Continuous sets are cast as float16, float32, or float64
based on the automunge(.) floatprecision parameter. And direct passthrough columns
via excl transform retain the received data type.
* train: a numerically encoded set of data intended to be used to train a
downstream machine learning model in the framework of a user's choice
* train_ID: the set of ID values corresponding to the train set if a ID
column(s) was passed to the function. This set may be useful if the shuffle
option was applied. Note that an ID column may serve multiple purposes such
as row identifiers or for pairing tabular data rows with a corresponding
image file for instance. Also included in this set is a derived column
titled 'Automunge_index', this column serves as an index identifier for order
of rows as they were received in passed data, such as may be beneficial
when data is shuffled. If the received df_train had a non-ranged integer index,
it is extracted and returned in this set. For more information please refer to writeup for the
trainID_column parameter.
* labels: a set of numerically encoded labels corresponding to the
train set if a label column was passed. Note that the function
assumes the label column is originally included in the train set. Note
that if the labels set is a single column a returned dataframe is flattened
to a pandas Series or a returned Numpy array is also
flattened (e.g. [[1,2,3]] converted to [1,2,3] ).
* val: a set of training data carved out from the train set
that is intended for use in hyperparameter tuning of a downstream model.
* val_ID: the set of ID values corresponding to the val
set. Comparable to columns returned in train_ID.
* val_labels: the set of labels corresponding to the val
set
* test: the set of features, consistently encoded and normalized as the
training data, that can be used to generate predictions from a
downstream model trained with train. Note that if no test data is
available during initial address this processing will take place in the
postmunge(.) function.
* test_ID: the set of ID values corresponding to the test set. Comparable
to columns returned in train_ID unless otherwise specified. For more
information please refer to writeup for the testID_column parameter.
* test_labels: a set of numerically encoded labels corresponding to the
test set if a label column was passed.
* postprocess_dict: a returned python dictionary that includes
normalization parameters and trained ML infill models used to
generate consistent processing of additional train or test data such as
may not have been available at initial application of automunge. It is
recommended that this dictionary be externally saved on each application
used to train a downstream model so that it may be passed to postmunge(.)
to consistently process subsequently available test data, such as
demonstrated with the pickle library above.
A few useful entries in the postprocess_dict include:
- postprocess_dict['finalcolumns_train']: list of returned column headers for train set including suffix appenders
- postprocess_dict['columntype_report']: a report classifying the returned column types, including lists of all categoric and all numeric returned columns
- postprocess_dict['column_map']: a report mapping the input columns to their associated returned columns (excluding those consolidated as part of a dimensionality reduction). May be useful to inspect sets returned for a specific feature e.g. train[postprocess_dict['column_map']['input_column_header']]
- postprocess_dict['FS_sorted]: sorted results of feature importance evaluation if elected
- postprocess_dict['miscparameters_results']: reporting results of validation tests performed on parameters and passed data
...
## automunge(.) passed parameters
```
train, train_ID, labels, \
val, val_ID, val_labels, \
test, test_ID, test_labels, \
postprocess_dict = \
am.automunge(df_train, df_test = False,
labels_column = False, trainID_column = False, testID_column = False,
valpercent=0.0, floatprecision = 32, cat_type = False, shuffletrain = True, noise_augment = 0,
dupl_rows = False, TrainLabelFreqLevel = False, powertransform = False, binstransform = False,
MLinfill = True, infilliterate=1, randomseed = False, eval_ratio = .5,
numbercategoryheuristic = 255, pandasoutput = 'dataframe', NArw_marker = True,
featureselection = False, featurethreshold = 0., inplace = False, orig_headers = False,
Binary = False, PCAn_components = False, PCAexcl = [], excl_suffix = False,
ML_cmnd = {'autoML_type':'randomforest',
'MLinfill_cmnd':{'RandomForestClassifier':{}, 'RandomForestRegressor':{}},
'PCA_type':'default',
'PCA_cmnd':{}},
assigncat = {'1010':[], 'onht':[], 'ordl':[], 'bnry':[], 'hash':[], 'hsh2':[],
'DP10':[], 'DPoh':[], 'DPod':[], 'DPbn':[], 'DPhs':[], 'DPh2':[],
'nmbr':[], 'mnmx':[], 'retn':[], 'DPnb':[], 'DPmm':[], 'DPrt':[],
'bins':[], 'pwr2':[], 'bnep':[], 'bsor':[], 'por2':[], 'bneo':[],
'ntgr':[], 'srch':[], 'or19':[], 'tlbn':[], 'excl':[], 'exc2':[]},
assignparam = {'global_assignparam' : {'(parameter)': 42},
'default_assignparam' : {'(category)' : {'(parameter)' : 42}},
'(category)' : {'(column)' : {'(parameter)' : 42}}},
assigninfill = {'stdrdinfill':[], 'MLinfill':[], 'zeroinfill':[], 'oneinfill':[],
'adjinfill':[], 'meaninfill':[], 'medianinfill':[], 'negzeroinfill':[],
'interpinfill':[], 'modeinfill':[], 'lcinfill':[], 'naninfill':[]},
assignnan = {'categories':{}, 'columns':{}, 'global':[]},
transformdict = {}, processdict = {}, evalcat = False, ppd_append = False,
entropy_seeds = False, random_generator = False, sampling_dict = False,
privacy_encode = False, encrypt_key = False, printstatus = 'summary', logger = {})
```
* df_train: a pandas dataframe or numpy array containing a structured
dataset intended for use to subsequently train a machine learning model.
The set at a minimum should be 'tidy' meaning a single column per feature
and a single row per observation, with all unique string column headers. If
desired the set may include one are more
"ID" columns (intended to be carved out and consistently shuffled or partitioned
such as an index column) and zero or one column intended to be used as labels
for a downstream training operation. The tool supports the inclusion of
non-index-range column as index or multicolumn index (requires named index
columns). Such index types are added to the returned "ID" sets which are
consistently shuffled and partitioned as the train and test sets. For passed
numpy array any label column should be the final column.
* df_test: a pandas dataframe or numpy array containing a structured
dataset intended for use to generate predictions from a downstream machine
learning model trained from the automunge returned sets. The set must be
consistently formatted as the train set with consistent column headers and
order of columns. (This set may optionally contain a labels column if one
was included in the train set although its inclusion is not required). If
desired the set may include one or more ID column(s) or column(s) intended
for use as labels. A user may pass False if this set is not available. The tool
supports the inclusion of non-index-range column as index or multicolumn index
(requires named index columns). Such index types are added to the returned
"ID" sets which are consistently shuffled and partitioned as the train and
test sets.
* labels_column: a string of the column title for the column from the
df_train set intended for use as labels in training a downstream machine
learning model. The function defaults to False for cases where the
train set does not include a label column. An integer column index may
also be passed such as if the source dataset was a numpy array. A user can
also pass True in which case the label set will be taken from the final
column of the train set (including cases of single column in train set).
A label column for df_train data is partitioned and returned in the labels set.
Note that a designated labels column will automatically be checked for in
corresponding df_test data and partitioned to the returned test_labels set when
included. Note that labels_column can also be passed as a list of multiple
label columns. Note that when labels_column is passed as a list, a first entry
set bracket specification comparable to as available for the Binary parameter
can be applied to designate that multiple categoric labels in the list may be consolidated to a
single categoric label, such as to train a single classification model for multiple classification targets,
which form may then be recovered in a postmunge inversion='labels' operation, such as to convert the
consolidated form after an inference operation back to the form of separate inferred labels.
When passing data as numpy arrays the label column needs to be the final column (on far right of dataframe).
* trainID_column: defaults to False, user can pass a column header or list of column headers
for columns that are to be segregated from the df_train set for return in the train_ID
set (consistently shuffled and partitioned when applicable). For example this may
be desired for an index column or any other column that the user wishes to exclude from
the ML infill basis. Defaults to False for cases where no ID columns are desired. Note
that when designating ID columns for df_train if that set of ID columns is present in df_test
they will automatically be given comparable treatment unless otherwise specified. An integer
column index or list of integer column indexes may also be passed such as if the source dataset
was a numpy array. Note that the returned ID sets (such as train_ID, val_ID, and test_ID) are automatically
populated with an additional column with header 'Automunge_index' which may serve as an
index column in cases of shuffling, validation partitioning, or oversampling. In cases of unnamed
non-range integer indexes, they are automatically extracted and returned in the ID sets as 'Orig_index'.
If a user would like to include a column both in the features for encoding and the ID sets for original form
retention, they can pass trainID_column as a list of two lists, e.g. [list1, list2], where the first
list may include ID columns to be struck from the features and the second list may include ID columns
to be retained in the features.
* testID_column: defaults to False, user can pass a column header or list of column headers
for columns that are to be segregated from the df_test set for return in the test_ID
set (consistently shuffled and partitioned when applicable). For example this may
be desired for an index column or any other column that the user wishes to exclude from
the ML infill basis. Defaults to False, which can be used for cases where the df_test
set does not contain any ID columns, or may also be passed as the default of False when
the df_test ID columns match those passed in the trainID_column parameter,
in which case they are automatically given comparable treatment. Thus, the primary intended use
of the testID_column parameter is for cases where a df_test has ID columns
different from those passed with df_train. Note that an integer column index
or list of integer column indexes may also be passed such as if the source dataset was a numpy array.
(When passing data as numpy arrays one should match ID partitioning between df_test and df_train.) In cases of unnamed
non-range integer indexes, they are automatically extracted and returned in the ID sets as 'Orig_index'.
If a user would like to include a column both in the features for encoding and the ID sets for original form
retention, they can pass testID_column as a list of two lists, e.g. [list1, list2], where the first
list may include ID columns to be struck from the features and the second list may include ID columns
to be retained in the features. (We recommend only using testID_column specification for cases where df_test
includes columns that aren't present in df_train, otehrwise it is automatic.)
* valpercent: a float value between 0 and 1 which designates the percent
of the training data which will be set aside for the validation
set (generally used for hyperparameter tuning of a downstream model).
This value defaults to 0 for no validation set returned. Note that when
shuffletrain parameter is activated (which is default for train sets) validation
sets will contain random rows. If shuffletrain parameter is set to False then any
validation set will be pulled from the bottom sequential rows of the df_train dataframe.
valpercent can also be passed as a two entry tuple in the form valpercent=(start, end),
where start is a float in the range 0<=start<1, end is a float in the range 0<end<=1, and start < end.
For example, if specified as valpercent=(0.2, 0.4), the returned training data would consist of the first 20% of rows and the last 60% of rows, while the validation set would consist of the remaining rows, and
where the train and validation sets may then be subsequently individually shuffled when activated by the shuffletrain parameter. The purpose of this valpercent tuple option is to support integration into a cross validation operation, for example for a cross validation with k=3, automunge(.) could be called three times with valpercent passed for each as (0,0.33), (0.33,0.66), (0.66,1) respectively. Please note that when using automunge(.) in a cross-validation operation, we recommend using the postprocess_dict['final_assigncat'] entry populated in the first automunge(.) call associated with the first train/validation split as the assigncat entry passed to the automunge(.) assigncat parameter in each subsequent automunge(.) call associated with the remaining train/validation splits, which will speed up the remaining calls by eliminating the automated evaluation of data properties as well as mitigate risk of (remote) edge case when category assignment to a column under automation may differ between different validation set partitions due to deviations in aggregate data properties associated with a column.
```
#example of preparing k folds in a cross validation:
k=3
for i in range(k):
print('processing fold #', i)
#valpercent accepts a tuple of float ratios to set boundaries of validation split
valpercent = (i/k, (i+1)/k)
if i == 0:
#can also populate any manual assignments here
assigncat = {}
elif i > 0:
#after first fold use the final assigncat from prior
#to turn off automated category assignments
#which will speed it up and eliminate an edge case
assigncat = postprocess_dict['final_assigncat']
train, train_ID, labels, \
val, val_ID, val_labels, \
test, test_ID, test_labels, \
postprocess_dict = \
am.automunge(df_train,
labels_column = labels_column,
valpercent = valpercent,
assigncat = assigncat)
#train and evaluate model with train/labels and val/val_labels
#note that in edge case number of columns may vary between folds
#which could arrise from e.g. 1010 binarization exposed to different range of entries in a feature
#if this becomes an obstacle can manually specify the range of activation targets in assignparam
#e.g. assignparam = {'1010' : {'<targetfeature>' : {'all_activations' : list_of_unique_values_for_targetfeature}}}
#or by just manually specifying ordinal encoding to categoric features in assigncat
#e.g. assigncat = {'ordl' : list_of_categoric_features}
#it is also possible to process folds for i>0 with train and validation data prepared seperately in postmunge
#this would run faster e.g. by eliminating redundant ML infill model training
#and ensure that each fold has same number of columns
#albeit with tradeoff of not strictly adhering to segregation of train/validation basis
#for avoidance of data leakage
```
* floatprecision: an integer with acceptable values of _16/32/64_ designating
the memory precision for returned float values. (A tradeoff between memory
usage and floating point precision, smaller for smaller footprint.)
This currently defaults to 32 for 32-bit precision of float values. Note
that there may be energy efficiency benefits at scale to basing this to 16.
Note that integer data types are still retained with this option.
* cat_type: accepts boolean defaulting to False, when True returned integer encoded categoric
features are converted to pandas categorical data type based on the transform's MLinfill_type.
In some cases this may actually slightly increase dataframe memory usage and
is redundant with information stored in the postprocess_dict, however we expect there
are potential downstream workflows where a user may prefer categoric data type which
is the reason for the option. Note that for cases where a categoric transform feature
did not have full representation in the training data set (e.g. as could be the case for fixed width bins with bnwd/bnwo/variants),
it is possible that this option will result in test data returned with missing values designated
as NaN entries (which is partly why this is not the default). Note that this same basis is carried through to postmunge.
* shuffletrain: can be passed as one of _{True, False, 'traintest'}_ which
indicates if the returned sets will have their rows shuffled. Defaults to True
for shuffling the train data but not the test data. False deactivates. To shuffle
both train and test data can pass as 'traintest'. Note that this impacts the
validation split if a valpercent was passed, where under the default of True
validation data will be randomly sampled and shuffled, or when shuffletrain is
deactivated validation data will be based on a partition of sequential rows from
the bottom of the train set. Note that row correspondence with shuffling is
maintained between train / ID / label sets. Note that we recommend deactivating
shuffletrain for sequential (time-series) data.
* noise_augment: accepts type int or float(int) >=0, defaults to 0. Used to specify
a count of additional duplicates of training data prepared and concatenated with the
original train set. Intended for use in conjunction with noise injection, such that
the increased size of training corpus can be a form of data augmentation. (Noise injection
still needs to be assigned, e.g. by assigning root categories in assigncat or could
turn on automated noise with powertransform = 'DP1'). Note that
injected noise will be uniquely randomly sampled with each duplicate. When noise_augment
is received as a dtype of int, one of the duplicates will be prepared without noise. When
noise_augment is received as a dtype of float(int), all of the duplicates will be prepared
with noise. When shuffletrain is activated the duplicates are collectively shuffled, and can distinguish
between duplicates by the original df_train.shape in comparison to the ID set's Automunge_index.
Please be aware that with large dataframes a large duplicate count may run into memory constraints,
in which case additional duplicates can be prepared separately in postmunge(.). Note that the entropy seed budget only accounts for preparing one set of data, for the noise_augment option with entropy seeding we recommend passing a custom extra_seed_generator with a sampling_type specification, which will result in internal samplings of additional entropy seeds for each additional noise_augment duplicate (or for the bulk_seeds case with external sampling can increase entropy_seed budget proportional to the number of additional duplicates with noise).
* dupl_rows: can be passed as _(True/False/'traintest'/'test')_ which indicates
if duplicate rows will be consolidated to single instance in returned sets. (In
other words, if same row included more than once, it will only be returned once.)
Defaults to False for not activated. True applies consolidation to train set only,
'test' applies consolidation to test set only, 'traintest' applies consolidation
to both train and test sets separately. Note this is applied prior to
TrainLabelFreqLevel if elected. As implemented this does not take into account
duplicate rows in train/test data which have different labels, only one version
of features/label pair is returned.
* TrainLabelFreqLevel: can be passed as _(True/False/'traintest'/'test')_
which indicates if the TrainLabelFreqLevel method will be applied to prepare for
oversampling training data associated with underrepresented labels (aka class
imbalance). The method adds multiples of training data rows for those labels with
lower frequency resulting in an (approximately) levelized frequency. This defaults
to False. Note that this feature may be applied to numerical label sets if
the processing applied to the set includes aggregated bins, such as for example
by passing a label column to the 'exc3' category in assigncat for pass-through
force to numeric with inclusion of standard deviation bins or to 'exc4' for
inclusion of powers of ten bins. For cases where labels are included in the
test set, this may also be passed as _'traintest'_ to apply levelizing to both
train and test sets or be passed as _'test'_ to only apply levelizing to test set.
(If a label set includes multiple configurations of the labels, the levelizing
will be based on the first categoric / binned set (either one-hot or ordinal)
based on order of columns.) For more on the class imbalance problem see "A
systematic study of the class imbalance problem in convolutional neural
networks" - Buda, Maki, Mazurowski.
* powertransform: _(False/True/'excl'/'exc2'/'infill'/'infill2'/'DP1'/'DP2'/'DT1'/'DT2'/'DB1'/'DB2')_, defaults to False.
The powertransform parameter is used to select between options for derived
category assignments under automation based on received feature set properties.
- Under the default scenario, category assignments under automation are consistent with section
[Default Transformations](https://github.com/Automunge/AutoMunge#default-transformations).
- Under the True scenario, an evaluation will be performed of distribution properties to select between
box-cox (bxcx), z-score (nmbr), min-max scaling (mnmx), or mean absolute deviation scaling (MAD3) normalization
of numerical data. Please note that under automation label columns do not receive this treatment, if desired they can be assigned to category ptfm in assigncat.
- Under the 'excl' scenario, columns not explicitly assigned in assigncat are subject to excl transform
for full pass-through, including data type retention and exclusion from ML infill basis.
- Under the 'exc2' scenario, columns not explicitly assigned in assigncat are subject to exc2 transform
for pass-through with force to numeric and adjinfill, and included in ML infill basis.
- The 'infill' scenario may be used when data is already numerically encoded and user just desires
ML infill without transformations. 'infill' treats sets with any non-integer
floats with exc2 (pass-through numeric), integer sets with any negative entries or unique ratio >0.75 with exc8
(for pass-through continuous integer sets subject to ml infill regression), and otherwise
integer sets with exc5 (pass-through integer subject to ml infill classification). Of course the rule of treating
integer sets with >0.75 ratio of unique entries as targets for ML infill regression or otherwise
for classification is an imperfect heuristic. If some particular
feature set has integers intended for regression below this threshold, the defaults under
automation can be overwritten to a specific column with the assigncat parameter, such as to
assign the column to exc8 instead of exc5. Note that 'infill'
includes support for NArw aggregation with NArw_marker parameter.
- The 'infill2' scenario is similar to the 'infill' scenario, with added allowance for inclusion of
non-numeric sets, which are given an excl pass-through and excluded from ML infill basis. (May return sets not suitable for direct application of ML.)
DP1 and DP2 are used for defaulting to noise injection for numeric and (non-hashed) categoric
- 'DP1' is similar to the defaults but default numerical replaced with DPnb, categoric with DP10, binary with DPbn, hash with DPhs, hsh2 with DPh2 (labels do not receive noise in this configuration)
- 'DP2' is similar to the defaults but default numerical replaced with DPrt, categoric with DPod, binary with DPbn, hash with DPhs, hsh2 with DPh2 (labels do not receive noise in this configuration)
- 'DT1'/'DT2' are comparable to 'DP1'/'DP2' but inject noise to just test data instead of just train data
- 'DB1'/'DB2' are comparable to 'DP1'/'DP2' but inject noise to both train and test data instead of just train data
* binstransform: a boolean identifier _(True/False)_ which indicates if all
default numerical sets will receive bin processing such as to generate child
columns with boolean identifiers for number of standard deviations from
the mean, with groups for values <-2, -2-1, -10, 01, 12, and >2. This value
defaults to False.
* MLinfill: a boolean identifier _(True/False)_ defaulting to True which indicates if the ML
infill method will be applied (to columns not otherwise designated in assigninfill) to predict infill for missing
or improperly formatted data using machine learning models trained on the
rest of the df\_train set. ML infill may alternatively
be assigned to distinct columns in assigninfill when MLinfill passed as False. Note that even if sets passed
to automunge(.) have no points needing infill, when activated ML infill models will still be trained for potential use
to subsequent data passed through postmunge(.). ML infill
by default applies scikit-learn random forest machine learning models to predict infill,
which may be changed to other available auto ML frameworks via the ML_cmnd parameter.
Parameters and tuning may also be passed to the model training as demonstrated
with ML_cmnd parameter below. Order of infill model training is based on a
reverse sorting of columns by count of missing entries in the df_train set.
(As a helpful hint, if data is already numerically encoded and just want to perform
ML infill without preprocessing transformations, can pass in conjunction parameter
powertransform = 'infill')
To bidirectionally exclude particular features from each other's imputation model bases
(such as may be desired in expectation of data leakage), a user can designate via
entries to ML_cmnd['leakage_sets'], documented further below with ML_cmnd parameter.
Or to unidirectionally exclude features from another's basis, a user can designate
via entries to ML_cmnd['leakage_dict'], also documented below. To exclude a feature from
all ML infill and PCA basis, can pass as entries to a list in ML_cmnd['full_exclude'].
Please note that columns returned from transforms with MLinfilltype 'totalexclude' (such as
for the excl passthrough transform) are automatically excluded from ML infill basis.
Please note that an assessment is performed to evaluate for cases of a kind of data
leakage across features associated with correlated presence of missing data
across rows for exclusion, documented further below with ML_cmnd parameter. This assessment
can be deactivated by passing ML_cmnd['leakage_tolerance'] = False.
Please note that for incorporating stochastic injections into the derived imputations, an
option is on by default which is further documented below in the ML_cmnd entries for 'stochastic_impute_categoric'
and 'stochastic_impute_numeric'. Please note that by default the random seed passed to model
training is stochastic between applications, as further documented below in the ML_cmnd entry for
'stochastic_training_seed'.
Further detail on ML infill provided in the paper [Missing Data Infill with Automunge](https://medium.com/automunge/missing-data-infill-with-automunge-ec94d6b13433).
* infilliterate: an integer indicating how many applications of the ML
infill processing are to be performed for purposes of predicting infill.
The assumption is that for sets with high frequency of missing values
that multiple applications of ML infill may improve accuracy although
note this is not an extensively tested hypothesis. This defaults to 1.
Note that due to the sequence of model training / application, a comparable
set prepared in automunge and postmunge with this option may vary slightly in
output (as automunge(.) will train separate models on each iteration and
postmunge will just apply the final model on each iteration).
Please note that early stopping is available for infilliterate based on a comparison
on imputations of a current iteration to the preceding, with a halt when reaching both
of tolerances associated with numeric features in aggregate and categoric
features in aggregate.
Early stopping evaluation can be activated by passing to ML_cmnd
ML_cmnd['halt_iterate']=True. The tolerances can be updated from the shown defaults
as ML_cmnd['categoric_tol']=0.05 and ML_cmnd['numeric_tol']=0.03. Further detail
on early stopping criteria is that the numeric halting criteria is based on comparing
for each numeric feature the ratio of mean(abs(delta)) between imputation iterations to
the mean(abs(entries)) of the current iteration, which are then weighted between features
by the quantity of imputations associated with each feature and compared to a numeric
tolerance value, and the categoric halting criteria is based on comparing the ratio of
number of inequal imputations between iterations to the total number of imputations across
categoric features to a categoric tolerance value. Early stopping is applied as soon as
the tolerances are met for both numeric and categoric features. If early stopping criteria
is not reached the specified infilliterate will serve as the maximum number of iterations.
(Be aware that stochastic noise from stochastic_impute_numeric
and stochastic_impute_categoric has potential to interfere with early stopping criteria.
Each of these can be deactivated in ML_cmnd if desired.)
* randomseed: defaults as False, also accepts integers within 0:2\*\*31-1. When not specified,
randomseed is based on a uniform randomly sampled integer within that range using an entropy_seeds when available.
Can be manually specified such as for repeatable data set shuffling, feature importance, and other algorithms.
Although ML infill by default samples a new random seed with each model training, to apply this random seed
to all model training operations can set a ML_cmnd entry as ML_cmnd['stochastic_training_seed']=False.
* eval_ratio: a 0-1 float or integer for number of rows, defaults to 0.5, serves
to reduce the overhead of the category evaluation functions under automation by only
evaluating this sampled ratio of rows instead from the full set. Makes automunge faster.
To accommodate small data sets, the convention is that eval_ratio is only applied
when training set has > 2,000 rows.
* numbercategoryheuristic: an integer used as a heuristic. When a
categorical set has more unique values than this heuristic, it defaults
to categorical treatment via hashing processing via 'hsh2', otherwise
categorical sets default to binary encoding via '1010'. This defaults to 255.
Heuristic can be deactivated by passing as False.
* pandasoutput: selects format of returned sets. Defaults to _'dataframe'_
for returned pandas dataframe for all sets. Dataframes index is not always preserved, non-integer indexes are extracted to the ID sets,
and automunge(.) generates an application specific range integer index in ID sets
corresponding to the order of rows as they were passed to function). If set to _True_, features and ID sets are comparable, and single column label sets are converted to Pandas Series instead of dataframe. If set to _False_
returns numpy arrays instead of dataframes. Note that the dataframes will have column
specific data types, or returned numpy arrays will have a single data type.
* NArw_marker: a boolean identifier _(True/False)_ which indicates if the
returned sets will include columns with markers for source column entries subject to
infill (columns with suffix '\_NArw'). This value defaults to True. Note
that the properties of cells qualifying as candidate for infill are based
on the 'NArowtype' of the root category of transformations associated with
the column, see Library of Transformations section below for catalog, the
various NArowtype options (such as justNaN, numeric, positivenumeric, etc)
are also further clarified below in discussion around the processdict parameter.
* featureselection: applied to activate a feature importance evaluation.
Defaults to False, accepts {False, True, 'pct', 'metric', 'report'}.
If selected automunge will return a summary of feature importance findings in the featureimportance
returned dictionary. False turns off, True turns on, 'pct' performs the evaluation followed by
a dimensionality reduction based on the featurethreshold parameter to retain a % of top features.
'metric' performs the evaluation followed by a dimensionality reduction to retain features above a metric value based on featurethreshold parameter. 'report' performs the evaluation and returns a report with no
further processing of data. Feature importance evaluation requires the inclusion of a
designated label column in the train set. Note that sorted
feature importance results are returned in postprocess_dict['FS_sorted'],
including columns sorted by metric and metric2. Note that feature importance
model training inspects same ML_cmnd parameters as ML infill. (Note that any user-specified size of validationratios
if passed are used in this method, otherwise defaults to 0.2.) Note that as currently implemented
feature selection does not take into account dimensionality reductions (like PCA or Binary).
Permutation importance method was inspired by a fast.ai lecture and more information can be found in
the paper "Beware Default Random Forest Importances" by Terrence Parr, Kerem
Turgutlu, Christopher Csiszar, and Jeremy Howard. This method currently makes
use of Scikit-Learn's Random Forest predictors.
* featurethreshold: defaults to 0., accepts float in range of 0-1. Inspected when
featureselection passed as 'pct' or 'metric'. Used to designate the threshold for feature
importance dimensionality reduction. Where e.g. for 'pct' 0.9 would retain 90% of top
features, or e.g. for 'metric' 0.03 would retain features whose metric was >0.03. Note that
NArw columns are only retained for those sets corresponding to columns that "made the cut".
* inplace: defaults to False, when True the df_train (and df_test) passed to automunge(.)
are overwritten with the returned train and test sets. This reduces memory overhead.
For example, to take advantage with reduced memory overhead you could call automunge(.) as:
```
df_train, train_ID, labels, \
val, val_ID, val_labels, \
df_test, test_ID, test_labels, \
postprocess_dict = \
am.automunge(df_train, df_test=df_test, inplace=True)
```
Note that this "inplace" option is not to be confused with the default inplace conduction of transforms
that may impact grouping coherence of columns derived from same feature.
That other inplace option can be deactivated in assignparam, as may be desired for grouping coherence.
Note that all custom_train transforms have built in support for optional deactivating of inplace parameter
through assignparam which is applied external to function call. Further detail on this other inplace
option is provided in the essay [Automunge Inplace](https://medium.com/automunge/automunge-inplace-a85766404bb7).
```
assignparam = {'global_assignparam' : {'inplace' : False}}
```
* Binary: a dimensionality reduction technique whereby the set of columns from
categoric encodings are collectively encoded with binary encoding such
as may reduce the column count. This has many benefits such as
memory bandwidth and energy cost for inference I suspect, however, there
may be tradeoffs associated with ability of the model to handle outliers,
as for any new combination of boolean set in the test data the collection
will be subject to zeroinfill.
Defaults to _False_, can be passed as one of
_{False, True, 'retain', 'ordinal', 'ordinalretain', 'onehot', 'onehotretain', [list of column headers]}_.
- False: the default, Binary dimensionality reduction not performed
- True: consolidates Boolean integer sets into a single common binarization encoding with replacement
- 'retain': comparable to True, but original columns are retained instead of replaced
- 'ordinal': comparable to True, but consolidates into an ordinal encoding instead of binarization
- 'ordinalretain': comparable to 'ordinal', but original columns are retained instead of replaced
- 'onehot': comparable to True, but consolidates into a one hot encoding instead of binarization
- 'ordinalretain': comparable to 'onehot', but original columns are retained instead of replaced
A user can also pass a list of target column headers if consolidation is only desired on
a subset of the categoric features. The column headers may be as received column headers or returned column headers with suffix appenders included. To allow distinguishing between the other conventions
such as 'retain', 'ordinal', etc. in conjunction with passing a subset list of column headers,
a user may optionally include the specification embedded in set brackets {} as the first entry to the list, e.g. [{'ordinal'}, 'targetcolumn', ...], where specification may be one of
True, 'retain', 'ordinal', etc. Otherwise when the first value in list is just a column
header string the binarization convention consistent with Binary=True is applied.
In order to separately consolidate multiple sets of categoric features, one
can pass Binary as a list of lists, with the sub lists matching criteria noted preceding (such as allowance for first entry to embed specification in set brackets). For cases where a consolidation with replacement is performed these sets should be nonoverlapping. Note that each sub list may include a distinct specification convention.
Note that postmunge(.) inversion is supported in conjunction with any of these Binary options. When applying inversion based on a specified list of columns (as opposed to inversion='test' for instance), if the specification includes a Binary returned column it should include the entire set of Binary columns associated with that consolidation, and if the Binary application was in the retain convention the inversion list should specify the Binary input columns instead of the Binary output columns.
(One may wish to abstain from stochastic_impute_categoric in conjunction with Binary since it may
interfere with the extent of contraction by expanding the number of activation sets.)
Some additional detail on Binary provided in the essay [Tabular Engineering with Automunge](https://medium.com/automunge/tabular-engineering-with-automunge-4cf9c43510e).
* PCAn_components: defaults to False for no PCA dimensionality reduction performed.
A user can pass _an integer_ to define the number of PCA returned features for
purposes of dimensionality reduction, such integer to be less than the otherwise
returned number of sets. Function will default to kernel PCA for all non-negative
sets or otherwise Sparse PCA. Also if this value is passed as a _float <1.0_ then
linear PCA will be applied such that the returned number of sets are the minimum
number that can reproduce that percent of the variance.
Note this can also be passed in conjunction with assigned PCA type or parameters in
the ML_cmnd object. Note that by default boolean integer and ordinal encoded returned
columns are excluded from PCA, which convention can be updated in ML_cmnd if desired.
These methods apply PCA with the scikit-learn library.
As a special convention, if PCAn_components passed as _None_ PCA is performed when # features exceeds 0.5 # rows (as a heuristic).
(The 0.5 value can also be updated in ML_cmnd by passing to ML_cmnd['PCA_cmnd']['col_row_ratio'].)
Note that inversion as can be performed with postmunge(.) is not currently supported for columns returned from PCA.
* PCAexcl: a _list_ of column headers for columns that are to be excluded from
any application of PCA, defaults to _[]_ (an empty list) for cases where no numeric columns are desired to
be excluded from PCA. Note that column headers can be passed as consistent with the passed df_train
to exclude from PCA all columns derived from a particular input column or alternatively can be
passed with the returned column headers which include the suffix appenders to exclude just those
specific columns from PCA.
* orig_headers: accepts boolean defaults to False, when activated the returned columns have suffix appenders stripped to return consistent column headers as input. Note that this may result in redundent column headers in the returned dataframe and privacy_encode when activated takes precedence. Was created for use in workflows supporting integration of noise injection into existing data pipelines. Consistent basis applied in postmunge.
* excl_suffix: boolean selector _{True, False}_ for whether columns headers from 'excl'
transform are returned with suffix appender '\_excl' included. Defaults to False for
no suffix. For advanced users setting this to True makes navigating data structures a
little easier at small cost of aesthetics of any 'excl' pass-through column headers.
('excl' transform is for direct pass-through with no transforms, no infill, and no data type conversion.
Note that 'excl' can be cast as the default category under automation to columns not otherwise assigned by setting powertransform='excl'.)
* ML_cmnd:
The ML_cmnd allows a user to set options or pass parameters to model training
operations associated with ML infill, feature importance, or PCA. ML_cmnd is passed
as a dictionary with first tier valid keys of:
{'autoML_type', 'MLinfill_cmnd', 'customML', 'PCA_type', 'PCA_cmnd', 'PCA_retain', 'leakage_tolerance',
'leakage_sets', 'leakage_dict', 'full_exclude', 'hyperparam_tuner', 'randomCV_n_iter',
'stochastic_training_seed', 'stochastic_impute_numeric', 'stochastic_impute_numeric_mu',
'stochastic_impute_numeric_sigma', 'stochastic_impute_numeric_flip_prob', 'stochastic_impute_numeric_noisedistribution', 'stochastic_impute_categoric', 'stochastic_impute_categoric_flip_prob', 'stochastic_impute_categoric_weighted', 'halt_iterate', 'categoric_tol', 'numeric_tol', 'automungeversion', 'optuna_n_iter', 'optuna_timeout', 'optuna_kfolds', 'optuna_fasttune', 'optuna_early_stop', 'optuna_max_depth_tuning_stepsize', 'xgboost_gpu_id'}
When a user passed ML_cmnd as an empty dictionary, any default values are populated internally.
The most relevant entries here are 'autoML_type' to choose the autoML framework for predictive
models, and ML_cmnd to pass parameters to the models. The default option for 'autoML_type' is 'randomforest' which uses a Scikit-learn Random
Forest implementation, other options are supported as one of {'randomforest', 'customML',
'catboost', 'flaml'}, each discussed further below. The customML scenario is for user defined
machine learning algorithms, and documented separately later in this document in the section [Custom ML Infill Functions](https://github.com/Automunge/AutoMunge#custom-ml-infill-functions).
(Other ML_cmnd options beside autoML_type, like for early stopping through iterations, stochastic noise injections, hyperparpameter tuning, leakage assessment, etc, are documented a few paragraphs down after discussing the autoML_type scenarios.)
Here is an example of the core components of specification, which include the
autoML_type to specify the learning library, the MLinfill_cmnd to pass parameters
to the learning library, and similar options for PCA via PCA_type and PCA_cmnd.
```
ML_cmnd = {'autoML_type':'randomforest',
'MLinfill_cmnd':{'RandomForestClassifier':{}, 'RandomForestRegressor':{}},
'PCA_type':'default',
'PCA_cmnd':{}}
```
For example, a user who doesn't mind a little extra training time for ML infill
could increase the passed n_estimators beyond the scikit default of 100.
```
ML_cmnd = {'autoML_type':'randomforest',
'MLinfill_cmnd':{'RandomForestClassifier':{'n_estimators':1000},
'RandomForestRegressor':{'n_estimators':1000}}}
```
A user can also perform hyperparameter tuning of the parameters passed to the
predictive algorithms by instead of passing distinct values passing lists or
range of values. This is currently supported for randomforest.
The hyperparameter tuning defaults to grid search for cases
where user passes any of fit parameters as lists or ranges, for example:
```
ML_cmnd = {'autoML_type':'randomforest',
'hyperparam_tuner':'gridCV',
'MLinfill_cmnd':{'RandomForestClassifier':{'max_depth':range(4,6)},
'RandomForestRegressor' :{'max_depth':[3,6,12]}}}
```
A user can also perform randomized search via ML_cmnd, and pass parameters as
distributions via scipy stats module such as:
```
from scipy import stats
ML_cmnd = {'autoML_type':'randomforest',
'hyperparam_tuner' : 'randomCV',
'randomCV_n_iter' : 15,
'MLinfill_cmnd':{'RandomForestClassifier':{'max_depth':stats.randint(3,6)},
'RandomForestRegressor' :{'max_depth':[3,6,12]}}}
```
Other autoML options besides random forest are also supported, each of which requires installing
the associated library (which aren't listed in the automunge dependencies). Citations associated with each
of these libraries are provided for reference.
One autoML option for ML infill and feature importance is by the CatBoost library.
Requires externally installing CatBoost library. Uses early stopping by default for regression
and no early stopping by default for classifier. Note that the random_seed
parameter is already passed based on the automunge(.) randomseed. Further information
on the CatBoost library is available on arxiv as Anna Veronika Dorogush, Vasily Ershov, Andrey Gulin. CatBoost: gradient
boosting with categorical features support [arXiv:1810.11363](https://arxiv.org/abs/1810.11363).
```
#CatBoost available by passing ML_cmnd as
ML_cmnd = {'autoML_type':'catboost'}
```
Can pass parameters to model initialization and fit operation as:
```
#example of turning on early stopping for classifier
#by passing a eval_ratio for validation set which defaults to 0.15 for regressor
#note eval_ratio is an Automunge parameter, other parameters accepted are those from CatBoost library
ML_cmnd = {'autoML_type':'catboost',
'MLinfill_cmnd' : {'catboost_classifier_model' : {},
'catboost_classifier_fit' : {'eval_ratio' : 0.15 },
'catboost_regressor_model' : {},
'catboost_regressor_fit' : {}}}
```
Another ML infill option is available by the FLAML library. Further information
on the FLAML library is available on arxiv as Chi Wang, Qingyun Wu, Markus Weimer,
Erkang Zhu. FLAML: A Fast and Lightweight AutoML Library [arXiv:1911.04706](https://arxiv.org/abs/1911.04706).
```
#FLAML available by passing ML_cmnd as
ML_cmnd = {'autoML_type':'flaml'}
```
Can pass parameters to fit operation as:
```
#example of setting time budget in seconds for training
ML_cmnd = {'autoML_type':'flaml',
'MLinfill_cmnd' : {'flaml_classifier_fit' : {'time_budget' : 15 },
'flaml_regressor_fit' : {'time_budget' : 15}}}
```
Another option is available for gradient boosting via the XGBoost library. Further information
on the XGBoost library is available on arxiv as Tianqi Chen, Carlos Guestrin. XGBoost: A Scalable
Tree Boosting System [arXiv:1603.02754](https://arxiv.org/abs/1603.02754).
```
#XGboost available by passing ML_cmnd as
ML_cmnd = {'autoML_type':'xgboost'}
```
The XGBoost implementation has Bayesian hyperparameter tuning available by way of the Optuna library by activating ML_cmnd['hyperparam_tuner'] = 'optuna_XGB1'. Optuna tuning accepts parameters for designating the max number of tuning iterations ('optuna_n_iter'), max tuning time in seconds ('optuna_timeout'), selecting a count for k-fold cross validation for tuning ('optuna_kfolds'), activating only evaluating one k-fold per trial ('optuna_fasttune'), selecting an early stopping criteria for max number of tuning cycles without improved performance ('optuna_early_stop'), and selecting a step size for max_depth tuning (with longer tuning times it may be beneficial to change from 2 to 1) ('optuna_max_depth_tuning_stepsize'). The early stopping criteria optuna_n_iter/optuna_timeout/optuna_early_stop are the values applied per target feature (tuning for a feature is halted when one of these conditions are met). Can pass specific parameters (such as selecting whether to run inference with GPU or CPU with 'predictor'), activate GPU training, tune other hyperparameters with optuna, and set tuning options from the shown defaults as:
```
ML_cmnd = {'autoML_type' : 'xgboost',
'MLinfill_cmnd' : {'xgboost_classifier_fit' : {'predictor' : 'cpu_predictor' },
'xgboost_regressor_fit' : {'predictor' : 'cpu_predictor' }},
'xgboost_gpu_id' : 0,
'hyperparam_tuner' : 'optuna_XG1',
'optuna_n_iter' : 100,
'optuna_timeout' : 600,
'optuna_kfolds' : 5,
'optuna_fasttune' : True,
'optuna_early_stop': 50,
'optuna_max_depth_tuning_stepsize' : 2,
}
```
The implementation makes of XGBoost's "scikit-learn API", so accepted parameters are consistent with XGBClassifier and XGBRegressor. Please note that we recommend setting the gpu_id with ML_cmnd['xgboost_gpu_id'] (rather than passing through parameters) for consistent treatment between tuning and training, which automatically sets tree_method as gpu_hist. (If you intend to put the automunge(.) returned postprocess_dict into production you may want to set the predicter to cpu_predictor as shown so can run ML infill inference without a GPU.) If you don't know your gpu device id, they are usually integers (e.g. if you have one CUDA gpu the device id is usually the integer 0, you can verify this by passing "nvidia-smi" in a terminal window). 'xgboost_gpu_id' defaults to False when not specified, meaning training and inference are conducted on CPU.
Further information on the Optuna library is available on arxiv as Takuya Akiba, Shotaro Sano, Toshihiko Yanase, Takeru Ohta, Masanori Koyama. Optuna: A Next-generation Hyperparameter Optimization Framework. [arXiv:1907.10902](https://arxiv.org/abs/1907.10902#). Our tuning implementation owes a thank you to a tutorial provided by Optuna.
Please note that model training by default incorporates a random random seed with each application,
as can be deactivated by passing ML_cmnd['stochastic_training_seed'] = False to defer to the
automunge(.) randomseed parameter.
Please note that there is a defaulted option to inject stochastic noise into derived imputations that
can be deactivated for numeric features by passing ML_cmnd['stochastic_impute_numeric'] = False
and/or categoric features by passing ML_cmnd['stochastic_impute_categoric'] = False.
Numeric noise injections sample from either a default laplace distribution or optionally a normal
distribution. Default noise profile is mu=0, sigma=0.03, and flip_prob=0.06 (where flip_prob is ratio
of a feature set's imputations receiving injections). Please note that this scale is based on a
min/max scaled representation of the imputations. Parameters can be configured by passing
ML_cmnd entries as floats to ML_cmnd['stochastic_impute_numeric_mu'],
ML_cmnd['stochastic_impute_numeric_sigma'],
ML_cmnd['stochastic_impute_numeric_flip_prob'] or as a string to
ML_cmnd['stochastic_impute_numeric_noisedistribution'] as one of {'normal', 'laplace', 'abs_normal', 'negabs_normal', 'abs_laplace', 'negabs_laplace'}.
Categoric noise injections sample from a uniform random draw from the set of unique
activation sets in the training data (as may include one or more columns for
categoric representations), such that for a ratio of a feature's set's imputations based on
the flip_prob (defaulting to 0.03 for categoric), each target imputation activation set is replaced with
the randomly drawn activation set. Parameter can be configured by passing
an ML_cmnd entry as a float to ML_cmnd['stochastic_impute_categoric_flip_prob'].
Categoric noise injections by default weight injections per distribution of activations as found in train set.
This can be deactivated by setting ML_cmnd['stochastic_impute_categoric_weighted'] as False.
(Please note that we suspect stochastic injections to imputations may have potential to interfere
with infilliterate early stopping criteria associated with ML_cmnd['halt_iterate'] documented
above with the infilliterate parameter.)
To bidirectionally exclude particular features from each other's imputation model bases
(such as may be desired in expectation of data leakage), a user can designate via
entries to ML_cmnd['leakage_sets'], which accepts entry of a list of column headers
or as a list of lists of column headers, where for each list of column headers,
entries will be excluded from each other's imputation model basis. We suggest
populating with column headers in form of data passed to automunge(.) (before suffix
appenders) although specific returned column headers can also be included if desired.
To unidirectionally exclude particular features from another feature's imputation model basis,
a user can designate via entries to ML_cmnd['leakage_dict'], which accepts entry of a dictionary
with target feature keys and values of a set of features to exclude from the target feature's
basis. This also accepts headers in either of input or returned convention.
To exclude a feature from ML infill basis of all other features, can pass as a list of entries to
ML_cmnd['full_exclude']. This also accepts headers in either of input or returned convention.
Please note that columns returned from transforms with MLinfilltype 'totalexclude' (such as
for the excl passthrough transform) are automatically excluded from model training basis.
Note that entries to 'full_exclude' are also excluded from PCA.
Please note that an operation is performed to evaluate for cases of a kind of data
leakage across features associated with correlated presence of missing data
across rows. Leakage tolerance is associated with an automated evaluation for a
potential source of data leakage across features in their respective imputation
model basis. The method compares aggregated NArw activations from a target feature
in a train set to the surrounding features in a train set and for cases where
separate features share a high correlation of missing data based on the shown
formula we exclude those surrounding features from the imputation model basis
for the target feature.
((Narw1 + Narw2) == 2).sum() / NArw1.sum() > leakage_tolerance
Where target features are those input columns with some returned column serving
as target for ML infill. ML_cmnd['leakage_tolerance'] defaults to 0.85 when not
specified, and can be set as 1 or False to deactivate the assessment.
If no ML infill model is trained due to insufficient features remaining after leakage carveouts for a target feature, a validation result is recorded in postprocess_dict['miscparameters_results']['not_enough_samples_or_features_for_MLinfill_result']['(feature)'].
A user can also assign specific methods for PCA transforms. Current PCA_types
supported include one of {'PCA', 'SparsePCA', 'KernelPCA'}, all via Scikit-Learn.
Note that the n_components are passed separately with the PCAn_components
argument noted above. A user can also pass parameters to the PCA functions
through the PCA_cmnd, for example one could pass a kernel type for KernelPCA
as:
```
ML_cmnd = {'PCA_type':'KernelPCA',
'PCA_cmnd':{'kernel':'sigmoid'}}
```
Note that for the default of ML_cmnd['PCA_type'] = 'default', PCA will default to KernelPCA
for all non-negative sets or otherwise Sparse PCA (unless PCAn_components was passed as float
between 0-1 in which case will apply as 'PCA'.
By default, ML_cmnd['PCA_cmnd'] is initialized internal to library with {'bool_ordl_PCAexcl':True},
which designates that returned ordinal and boolean encoded columns are to be excluded from PCA.
This convention by be turned off by passing as False, or to only exclude boolean integer but
not ordinal encoded columns can pass ML_cmnd['PCA_cmnd'] as {'bool_PCA_excl':True}.
For the PCA aggregation to be performed without replacement, can pass ML_cmnd['PCA_retain']=True.
* assigncat: assigncat accepts a dictionary used to assign root categories of transformation to
input features. The keys of the dictionary accept root transformation categories and the corresponding
values should be assigned as a string or list of strings representing column headers of input features.
```
#Here are a few representative root categories.
#first row: categoric encodings
#second row: corresponding categoric encodings with noise injection
#third row: numeric normalizaitons and corresponding normalizations with noise
#fourth row: examples of binning transforms (as could be added to a normalization family tree)
#fifth row: miscellaneous, including integer sets, search, string parsing, explainability support, and passthrough
assigncat = {'1010':[], 'onht':[], 'ordl':[], 'bnry':[], 'hash':[], 'hsh2':[],
'DP10':[], 'DPoh':[], 'DPod':[], 'DPbn':[], 'DPhs':[], 'DPh2':[],
'nmbr':[], 'mnmx':[], 'retn':[], 'DPnb':[], 'DPmm':[], 'DPrt':[],
'bins':[], 'pwr2':[], 'bnep':[], 'bsor':[], 'por2':[], 'bneo':[],
'ntgr':[], 'srch':[], 'or19':[], 'tlbn':[], 'excl':[], 'exc2':[]}
```
Full options are provided in document below (in section
titled "Library of Transformations"). [Library of Transformations](https://github.com/Automunge/AutoMunge#library-of-transformations)
A user may add column header identifier strings to each of these lists to assign
a distinct specific processing approach to any column (including labels). Note
that this processing category will serve as the "root" of the tree of transforms
as defined in the transformdict. Note that additional categories may be passed if
defined in the passed transformdict and processdict. An example of usage here
could be to assign the numeric noise injection transform 'DPnb' to two input features
we'll call 'input_column_1' and 'input_column_2'.
```
assigncat = {'DPnb':['input_column_1', 'input_column_2']}
```
Note that for single entry column assignments a user can just pass the string or integer
of the column header without the list brackets.
Note tht a small number of transforms, such as DPmp or DPse, support assigncat specification
with multiple input columns treated as a single feature, available by in the assigncat
specification replacing a single input header string with a {set} of input header strings.
```
assigncat = {'DPmp':[{'input_column_1', 'input_column_2'}]}
```
* assignparam:
A user may pass column-specific or category specific parameters to those transformation
functions that accept parameters. Any parameters passed to automunge(.) will be saved in
the postprocess_dict and consistently applied in postmunge(.). assignparam is
a dictionary that should be formatted per following example:
```
#template:
assignparam = {'global_assignparam' : {'(parameter)': 42},
'default_assignparam' : {'(category)' : {'(parameter)' : 42}},
'(category)' : {'(column)' : {'(parameter)' : 42}}}
#example:
assignparam = {'category1' : {'column1' : {'param1' : 123}, 'column2' : {'param1' : 456}},
'category2' : {'column3' : {'param2' : 'abc', 'param3' : 'def'}}}
```
In other words: The first layer keys are the transformation category for
which parameters are intended. The second layer keys are string identifiers
for the columns for which the parameters are intended. The third layer keys
are the parameters whose values are to be passed. To specify new default
parameters for a given transformation category 'default_assignparam' can
be applied, or to specify global parameters for all transformation functions
'global_assignparam' can be applied. Transforms that do not accept a particular
parameter will just ignore the specification.
As an example with actual parameters, consider the transformation category
'splt' intended for 'column1', which accepts parameter 'minsplit' for minimum
character length of detected overlaps. If we wanted to pass 4 instead of the
default of 5:
```
assignparam = {'splt' : {'column1' : {'minsplit' : 4}}}
```
Note that the category identifier should be the category entry to the family
tree primitive associated with the transform, which may be different than the
root category of the family tree assigned in assigncat. The set of family
tree definitions for root categories are included below for reference. Generally
speaking, the transformation category to serve as a target for asisgnparam
assignment will match the recorded suffix appender of the returned column headers.
As an example, to demonstrate edge case for cases where the transformation category does not match
the transformation function (based on entries to transformdict and
processdict), if we want to pass a parameter to turn off UPCS transform included
in or19 family tree and associated with the or19 transformation category for
instance, we would pass the parameter to or19 instead of UPCS because assignparam
inspects the transformation category associated with the transformation function,
and UPCS function is the processdict entry for or19 category entry in the family
tree primitives associated with the or19 root category, even though 'activate' is
an UPCS transformation function parameter. A helpful rule of thumb to help distinguish is that
the suffix appender recorded in the returned column associated with an applied transformation
function should match the transformation category serving as target for assignparam assignment,
as in this case the UPCS transform records a 'or19' suffix appender. (This clarification
intended for advanced users to avoid ambiguity.)
```
assignparam = {'or19' : {'column1' : {'activate' : False}}}
```
Note that column string identifiers may just be the source column string or may
include the suffix appenders for downstream columns serving as input to the
target transformation function, such as may be useful if multiple versions of
the same transformation are applied within the same family tree. If more than
one column identifier matches a column in assignparam entry to a transformation
category (such as both the source column and the derived column serving as input
to the transformation function), the derived column (such as may include suffix
appenders) will take precedence.
Note that if a user wishes to overwrite the default parameters associated with a
particular category for all columns without specifying them individually they can
pass a 'default_assignparam' entry as follows (this only overwrites those parameters
that are not otherwise specified in assignparam).
```
assignparam = {'category1' : {'column1' : {'param1' : 123}, 'column2' : {'param1' : 456}},
'category2' : {'column3' : {'param2' : 'abc', 'param3' : 'def'}},
'default_assignparam' : {'category3' : {'param4' : 789}}}
```
Or to pass the same parameter to all transformations to all columns, can use the
'global_assignparam'. The global_assignparam may be useful for instance to turn off
inplace transformations such as to retain family tree column grouping correspondence
in returned set. Transformations that do not accept a particular parameter will just
ignore.
```
assignparam = {'global_assignparam' : {'inplace' : False}}
```
In order of precedence, parameter assignments may be designated targeting a transformation
category as applied to a specific column header with suffix appenders, a transformation
category as applied to an input column header (which may include multiple instances),
all instances of a specific transformation category, all transformation categories, or may
be initialized as default parameters when defining a transformation category.
See the Library of Transformations section below for those transformations that
accept parameters.
* assigninfill
```
#Here are the current infill options built into our library, which
#we are continuing to build out.
assigninfill = {'stdrdinfill':[], 'MLinfill':[], 'zeroinfill':[], 'oneinfill':[],
'adjinfill':[], 'meaninfill':[], 'medianinfill':[], 'negzeroinfill':[],
'modeinfill':[], 'lcinfill':[], 'naninfill':[]}
```
A user may add column identifier strings to each of these lists to designate the
column-specific infill approach for missing or improperly formatted values. The
source column identifier strings may be passed for assignment of common infill
approach to all columns derived from same source column, or derived column identifier
strings (including the suffix appenders from transformations) may be passed to assign
infill approach to a specific derived column. Note that passed derived column headers
take precedence in case of overlap with passed source column headers. Note that infill
defaults to MLinfill if nothing assigned and the MLinfill argument to automunge is set
to True. Note that for single entry column assignments a user can just pass the string
or integer of the column header without the list brackets. Note that the infilled cells
are based on the rows corresponding to activations from the NArw_marker parameter.
```
# - stdrdinfill : the default infill specified in the library of transformations for
# each transform below.
# - MLinfill : for MLinfill to distinct columns when MLinfill parameter not activated
# - zeroinfill : inserting the integer 0 to missing cells.
# - oneinfill : inserting the integer 1.
# - negzeroinfill : inserting the float -0.
# - adjinfill : passing the value from the preceding row to missing cells.
# - meaninfill : inserting the mean derived from the train set to numeric columns.
# - medianinfill : inserting the median derived from the train set to numeric columns.
# (Note currently boolean columns derived from numeric are not supported
# for mean/median and for those cases default to those infill from stdrdinfill.)
# - interpinfill : performs linear interpolation to numeric sets, based on pandas interpolate
# - modeinfill : inserting the most common value for a set, note that modeinfill
# supports multi-column boolean encodings, such as one-hot encoded sets or
# binary encoded sets.
# - lcinfill : comparable to modeinfill but with least common value instead of most.
# - naninfill : inserting NaN to missing cells.
#an example of passing columns to assign infill via assigninfill:
#for source column 'column1', which hypothetically is returned through automunge(.) as
#'column1_nmbr', 'column1_mnmx', 'column1_bxcx_nmbr'
#we can assign MLinfill to 'column1_bxcx_nmbr' and meaninfill to the other two by passing
#to an automunge call:
assigninfill = {'MLinfill':['column1_bxcx_nmbr'], 'meaninfill':['column1']}
```
* assignnan: for use to designate data set entries that will be targets for infill, such as
may be entries not covered by NArowtype definitions from processdict. For example, we have
general convention that NaN (as np.nan) is a target for infill, but a data set may be passed with a custom
string signal for infill, such as 'unknown'. This assignment operator saves the step of manual
munging prior to passing data to functions by allowing user to specify custom targets for infill.
assignnan accepts following form, populated in first tier with any of 'categories'/'columns'/'global'
```
assignnan = {'categories':{}, 'columns':{}, 'global':[]}
```
Note that global takes entry as a list, while categories and columns take entries as a dictionary
with values of the target assignments and corresponding lists of terms, which could be populated
with entries as e.g.:
```
assignnan = {'categories' : {'cat1' : ['unknown1']},
'columns' : {'col1' : ['unknown2']},
'global' : ['unknown3']}
```
Where 'cat1' is example of root category, 'col1' is example of source column header, and 'unknown1'/2/3
are examples of entries intended for infill corresponding to each. In cases of redundant specification,
global takes precedence over columns which takes precedence over categories. Note that lists of terms
can also be passed as single values such as string / number for internal conversion to list.
assignnan also supports stochastic and range based injections, such as to target for infill specific
segments of a set's distribution. 'injections' can be passed to assignnan as:
```
assignnan = {'injections' : {'(column)' : {'inject_ratio' : (float),
'range' : {'ratio' : (float),
'ranges' : [[min1, max1], [min2, max2]]},
'minmax_range' : {'ratio' : (float),
'ranges' : [[min1, max1], [min2, max2]]},
'entries' : ['(entry1)', '(entry2)'],
'entry_ratio' : {'(entry1)' : (float),
'(entry2)' : (float)}
}
}
}
#where injections may be specified for each source column passed to automunge(.)
#- inject_ratio is uniform randomly injected nan points to ratio of entries
#- range is injection within a specified range based on ratio float defaulting to 1.0
#- minmax_range is injection within scaled range (accepting floats 0-1 based on received
#column max and min (returned column is not scaled)
#- entries are full replacement of specific entries to a categoric set
#- entry_ratio are partial injection to specific entries to a categoric set per specified float ratio
```
* transformdict: a dictionary allowing a user to pass a custom tree of transformations or to overwrite
family trees defined in the transform_dict internal to the library. Defaults to _{}_ (an empty dictionary).
Note that a user may define their own (traditionally 4 character) string "root categories"
by populating a "family tree" of transformation categories associated with that root category,
which are a way of specifying the type and order of transformation functions to be applied.
Each category populated in a family tree requires its own transformdict root category family tree definition
as well as an entry in the processdict described below for assigning associated transformation functions and data properties.
Note that the library has an internally defined library of transformation categories prepopulated in the
internal transform_dict which are detailed below in the Library of Transformations section of this document.
For clarity transformdict refers to the user passed data structure which is subsequently consolidated into the internal "transform_dict" (with underscore) data structure. The returned version in postprocess_dict['transform_dict'] records entries that were inspected in the associated automunge(.) call.
```
#transform_dict is for purposes of populating
#for each transformation category's use as a root category
#a "family tree" set of associated transformation categories
#which are for purposes of specifying the type and order of transformation functions
#to be applied when a transformation category is assigned as a root category
#we'll refer to the category key to a family as the "root category"
#we'll refer to a transformation category entered into
#a family tree primitive as a "tree category"
#a transformation category may serve as both a root category
#and a tree category
#each transformation category will have a set of properties assigned
#in the corresponding process_dict data structure
#including associated transformation functions, data properties, and etc.
#a root category may be assigned to a column with the user passed assigncat
#or when not specified may be determined under automation via _evalcategory
#when applying transformations
#the transformation functions associated with a root category
#will not be applied unless that same category is populated as a tree category
#the family tree primitives are for purposes of specifying order of transformations
#as may include generations and branches of derivations
#as well as for managing column retentions in the returned data
#(as in some cases intermediate stages of transformations may or may not have desired retention)
#the family tree primitives can be distinguished by types of
#upstream/downstream, supplement/replace, offsping/no offspring
#___________
#'parents' :
#upstream / first generation / replaces column / with offspring
#'siblings':
#upstream / first generation / supplements column / with offspring
#'auntsuncles' :
#upstream / first generation / replaces column / no offspring
#'cousins' :
#upstream / first generation / supplements column / no offspring
#'children' :
#downstream parents / offspring generations / replaces column / with offspring
#'niecesnephews' :
#downstream siblings / offspring generations / supplements column / with offspring
#'coworkers' :
#downstream auntsuncles / offspring generations / replaces column / no offspring
#'friends' :
#downstream cousins / offspring generations / supplements column / no offspring
#___________
#each of the family tree primitives associated with a root category
#may have entries of zero, one, or more transformation categories
#when a root category is assigned to a column
#the upstream primitives are inspected
#when a tree category is found
#as an entry to an upstream primitive associated with the root category
#the transformation functions associated with the tree category are performed
#if any tree categories are populated in the upstream replacement primitives
#their inclusion supersedes supplement primitive entries
#and so the input column to the transformation is not retained in the returned set
#with the column replacement either achieved by an inplace transformation
#or subsequent deletion operation
#when a tree category is found
#as an entry to an upstream primitive with offspring
#after the associated transformation function is performed
#the downstream primitives of the family tree of the tree category is inspected
#and those downstream primitives are treated as a subsequent generation's upstream primitives
#where the input column to that subsequent generation is the column returned
#from the transformation function associated with the upstream tree category
#this is an easy point of confusion so as further clarification on this point
#the downstream primitives associated with a root category
#will not be inspected when root category is applied
#unless that root category is also entered as a tree category entry
#in one of the root category's upstream primitives with offspring
```
Once a root category has been defined, it can be assigned to a received column in assigncat.
For example, a user wishing to define a new set of transformations for a numerical set can define a new root category 'newt'
that combines NArw, min-max, box-cox, z-score, and standard deviation bins by passing a
transformdict as:
```
transformdict = {'newt' : {'parents' : ['bxc4'],
'siblings': [],
'auntsuncles' : ['mnmx', 'bins'],
'cousins' : ['NArw'],
'children' : [],
'niecesnephews' : [],
'coworkers' : [],
'friends' : []}}
#Where since bxc4 is passed as a parent, this will result in pulling
#offspring keys from the bxc4 family tree, which has a nbr2 key as children.
#from automunge internal library:
transform_dict.update({'bxc4' : {'parents' : ['bxcx'],
'siblings': [],
'auntsuncles' : [],
'cousins' : ['NArw'],
'children' : [],
'niecesnephews' : [],
'coworkers' : ['nbr2'],
'friends' : []}})
#note that 'nbr2' is passed as a coworker primitive meaning no downstream
#primitives would be accessed from the nbr2 family tree. If we wanted nbr2 to
#incorporate any offspring from the nbr2 tree we could instead assign as children
#or niecesnephews.
#Having defined this root category 'newt', we can then assign to a column in assigncat
#(Noting that we still need a corresponding processdict entry unless overwriting an internal transform_dict entry.)
assigncat = {'newt':['targetcolumn']}
#Note that optionally primitives without entries can be omitted,
#and list brackets can be omitted for single entries to a primitive
#the following is an equivalent specification to the 'newt' entry above
transformdict = {'newt' : {'parents' : 'bxc4',
'auntsuncles' : ['mnmx', 'bins'],
'cousins' : 'NArw'}}
```
Basically here 'newt' is the root category key and once defined can be assigned as a root category in assigncat
to be applied to a column or can also be passed to one of the family primitives associated with itself or some other root category
to apply the corresponding transformation functions populated in the processdict entry. Once a transformation category is accessed
based on an entry to a family tree primitive associated with a root category assigned to a column,
the corresponding processdict transformation function is applied, and if it was accessed as a family tree
primitive with downstream offspring then those offspring keys are pulled from
that key's family tree. For example, here mnmx is passed as an auntsuncles which
means the mnmx processing function is applied with no downstream offspring. The
bxc4 key is passed as a parent which means the transform associated with the bxc4 category is applied followed
by any downstream transforms from the bxc4 key family tree, which we also show.
Note the family primitives tree can be summarized as:
```
'parents' : upstream / first generation / replaces column / with offspring
'siblings': upstream / first generation / supplements column / with offspring
'auntsuncles' : upstream / first generation / replaces column / no offspring
'cousins' : upstream / first generation / supplements column / no offspring
'children' : downstream parents / offspring generations / replaces column / with offspring
'niecesnephews' : downstream siblings / offspring generations / supplements column / with offspring
'coworkers' : downstream auntsuncles / offspring generations / replaces column / no offspring
'friends' : downstream cousins / offspring generations / supplements column / no offspring
```

Note that a user should avoid redundant entries across a set of upstream or downstream primitives.
If a redundant transformation function is desired to a distinct upstream or downstream inputcolumn (such as may be desired
to apply same transform but with different parameters), each of the redundant applications needs a distinct transformation category defined in
the processdict (and a distinct suffix appender which is automatic based on the transformation category).
Since there is recursion involved a user should be careful of creating infinite loops from passing
downstream primitive entries with offspring whose own offspring coincide with an earlier generation.
(The presence of infinite loops is tested for to a max depth of 1111 offspring, an arbitrary figure.)
Note that transformdict entries can be defined to overwrite existing root category entries defined in the internal library.
For example, if we wanted our default numerical scaling to be by min-max instead of z-score normalization, one way we could accomplish
that is to overwrite the 'nmbr' family tree which is the default root category applied to numeric sets under automation. (Other default
root categories under automation are detailed further below in the
"[Default Tranformations](https://github.com/Automunge/AutoMunge#default-transformations)" section.) An alternate approach could be to
overwrite the nmbr processdict entry which we'll demonstrate shortly.
```
transformdict = {'nmbr' : {'auntsuncles' : 'mnmx',
'cousins' : 'NArw'}}
```
Note that when we define a new root category family tree such as the 'newt' example shown above, we also need
to define a corresponding processdict entry for the new category, which we detail next.
Further detail on the transformdict data format provided in the essay [Data Structure](https://medium.com/automunge/data-structure-59e52f141dd6). For tutorials on defining a family tree, see also the essay [Specification of Derivations with Automunge](https://medium.com/automunge/specification-of-derivations-with-automunge-6174ca227184).
* processdict: a dictionary allowing a user to specify transformation category properties corresponding
to new categories defined in transformdict or to overwrite process_dict entries defined internal to the library.
Defaults to _{}_ (an empty dictionary). The types of properties specified include the associated transformation
functions, types of data that will be targets for infill, a classification of data types (such as between numeric, integer, categoric, etc),
and more detailed below. All transformation categories used in transformdict, including
those used as root categories as well as transformation category entries to family tree primitives associated
with a root category, require a corresponding entry in the processdict to define transformation category
properties. Only in cases where a transformdict entry is being passed to overwrite an existing category internal
to the library is a corresponding processdict entry not required. However note that a processdict entry can be passed
without a corresponding root category definition in transformdict, which may be used when passing a custom transformation category to a family tree primitive without offspring.
We'll describe the options for processdict entries here. For clarity processdict refers to the user passed data structure which is subsequently consolidated into the internal "process_dict" (with underscore) data structure.
The returned version in postprocess_dict['process_dict'] records entries that were inspected in the
associated automunge(.) call.
```
#A user should pass either a pair of processing functions to both
#dualprocess and postprocess, or alternatively just a single processing
#function to singleprocess, and omit or pass None to those not used.
#A user can also pass an inversion function to inverseprocess if available.
#Most of the transforms defined internal to the library follow this convention.
#dualprocess: for passing a processing function in which normalization
# parameters are derived from properties of the training set
# and jointly process the train set and if available corresponding test set
#singleprocess: for passing a processing function in which no normalization
# parameters are needed from the train set to process the
# test set, such that train and test sets processed separately
#postprocess: for passing a processing function in which normalization
# parameters originally derived from the train set are applied
# to separately process a corresponding test set
# An entry should correspond to the dualprocess entry.
#inverseprocess: for passing a processing function used to invert
# a corresponding forward pass transform
# An entry should correspond to the dualprocess or singleprocess entry.
#__________________________________________________________________________
#Alternative streamlined processing function conventions are also available
#which may be populated as entries to custom_train / custom_test / custom_inversion.
#These conventions are documented in the readme section "Custom Transformation Functions".
#In cases of redundancy custom_train entry specifications take precedence
#over dualprocess/singleprocess/postprocess entries.
#custom_train: for passing a train set processing function in which normalization parameters
# are derived from properties of the training set. Will be used to process both
# train and test data when custom_test not provided (in which case similar to singleprocess convention).
#custom_test: for passing a test set processing function in which normalization parameters
# that were derived from properties of the training set are used to process the test data.
# When omitted custom_train will be used to process both the train and test data.
# An entry should correspond to the custom_train entry.
#custom_inversion: for passing a processing function used to invert
# a corresponding forward pass transform
# An entry should correspond to the custom_train entry.
#___________________________________________________________________________
#The processdict also specifies various properties associated with the transformations.
#At a minimum, a user needs to specify NArowtype and MLinfilltype or otherwise
#include a functionpointer entry.
#___________________________________________________________________________
#NArowtype: classifies the type of entries that are targets for infill.
# can be entries of {'numeric', 'integer', 'justNaN', 'exclude',
# 'positivenumeric', 'nonnegativenumeric',
# 'nonzeronumeric', 'parsenumeric', 'datetime'}
# Note that in the custom_train convention this is used to apply data type casting prior to the transform.
# - 'numeric' for source columns with expected numeric entries
# - 'integer' for source columns with expected integer entries
# - 'justNaN' for source columns that may have expected entries other than numeric
# - 'binary' similar to justNaN but only the top two most frequent entries are considered valid
# - 'exclude' for source columns that aren't needing NArow columns derived
# - 'totalexclude' for source columns that aren't needing NArow columns derived,
# also excluded from assignnan global option and nan conversions for missing data
# - 'positivenumeric' for source columns with expected positive numeric entries
# - 'nonnegativenumeric' for source columns with expected non-negative numeric (zero allowed)
# - 'nonzeronumeric' for source columns with allowed positive and negative but no zero
# - 'parsenumeric' marks for infill strings that don't contain any numeric characters
# - 'datetime' marks for infill cells that aren't recognized as datetime objects
# ** Note that NArowtype also is used as basis for metrics evaluated in drift assessment of source columns
# ** Note that by default any np.inf values are converted to NaN for infill
# ** Note that by default python None entries are treated as targets for infill
#___________________________________________________________________________
#MLinfilltype: classifies data types of the returned set,
# as may determine what types of models are trained for ML infill
# can be entries {'numeric', 'singlct', 'binary', 'multirt', 'concurrent_act', 'concurrent_nmbr',
# '1010', 'exclude', 'boolexclude', 'ordlexclude', 'totalexclude'}
# 'numeric' single columns with numeric entries for regression (signed floats)
# 'singlct' for single column sets with ordinal entries (nonnegative integer classification)
# 'integer' for single column sets with integer entries (signed integer regression)
# 'binary' single column sets with boolean entries (0/1)
# 'multirt' categoric multicolumn sets with boolean entries (0/1), up to one activation per row
# '1010' for multicolumn sets with binary encoding via 1010, boolean integer entries (0/1),
# with distinct encoding representations by the set of activations
# 'concurrent_act' for multicolumn sets with boolean integer entries as may have
# multiple entries in the same row, different from 1010
# in that columns are independent
# 'concurrent_ordl' for multicolumn sets with ordinal encoded entries (nonnegative integer classification)
# 'concurrent_nmbr' for multicolumn sets with numeric entries (signed floats)
# 'exclude' for columns which will be excluded from infill, included in other features' ML infill bases
# returned data should be numerically encoded
# 'boolexclude' boolean integer set suitable for Binary transform but excluded from all infill
# (e.g. NArw entries), included in other features' ML infill bases
# 'ordlexclude' ordinal set excluded from infill (note that in some cases in library
# ordlexclude may return a multi-column set), included in other features' ML infill bases
# 'totalexclude' for complete passthroughs (excl) without datatype conversions, infill,
# excluded from other features' ML infill bases
#___________________________________________________________________________
#Other optional entries for processdict include:
#info_retention, inplace_option, defaultparams, labelctgy,
#defaultinfill, dtype_convert, functionpointer, and noise_transform.
#___________________________________________________________________________
#info_retention: boolean marker associated with an inversion operation that helps inversion prioritize
#transformation paths with full information recovery. (May pass as True when there is no information loss.)
#___________________________________________________________________________
#inplace_option: boolean marker indicating whether a transform supports the inplace parameter received in params.
# When not specified this is assumed as True (which is always valid for the custom_train convention).
# In other words, in dualprocess/singleprocess convention, if your transform does not support inplace,
# need to specify inplace_option as False
#___________________________________________________________________________
#defaultparams: a dictionary recording any default assignparam assignments associated with the category.
# Note that deviations in user specifications to assignparam as part of an automunge(.) call
# take precedence over defaultparams. Note that when applying functionpointer defaultparams
# from the pointer target are also populated when not previously specified.
#___________________________________________________________________________
#defaultinfill: this option serves to specify a default infill
# applied after NArowtype data type casting and preceding the transformation function.
# (defaultinfill is a precursor to ML infill or other infills applied based on assigninfill)
# defaults to 'adjinfill' when not specified, can also pass as one of
# {'adjinfill', 'meaninfill', 'medianinfill', 'modeinfill', 'lcinfill',
# 'interpinfill', 'zeroinfill', 'oneinfill', 'naninfill', 'negzeroinfill'}
# Note that 'meaninfill' and 'medianinfill' only work with numeric data (based on NArowtype).
# Note that for 'datetime' NArowtype, defaultinfill only supports 'adjinfill' or 'naninfill'
# Note that 'naninfill' is intended for cases where user wishes to apply their own default infill
# as part of a custom_train entry
#___________________________________________________________________________
#dtype_convert: this option is intended for the custom_train convention, accepts boolean entries,
# defaults to True when not specified, False turns off a data type conversion
# that is applied after custom_train transformation functions based on MLinfilltype.
# May also be used to deactivate a floatprecision conversion for any category.
# This option primarily included to support special cases and not intended for wide use.
#___________________________________________________________________________
#labelctgy: an optional entry, should be a string entry of a single transformation category
# as entered in the family tree when the category of the processdict entry is used as a root category.
# Used to determine a basis of feature selection for cases where root
# category is applied to a label set resulting in a set returned in multiple configurations.
# Also used in label frequency levelizer.
# Note that since this is only used for small edge case populating a labelctgy entry is optional.
# If one is not assigned, an arbitrary entry will be accessed from the family tree.
# This option primarily included to support special cases.
#___________________________________________________________________________
#functionpointer: A functionpointer entry
# may be entered in lieu of any or all of these other entries **.
# The functionpointer should be populated with a category that has its own processdict entry
# (or a category that has its own process_dict entry internal to the library)
# The functionpointer inspects the pointer target and passes those specifications
# to the origin processdict entry unless previously specified.
# The functionpointer is intended as a shortcut for specifying processdict entries
# that may be helpful in cases where a new entry is very similar to some existing entry.
# (**As the exception labelctgy not accessed from functionpointer
# since it is specific to a root category's family tree.)
#___________________________________________________________________________
#noise_transform: this option serves to specify the noise injection types for noise transforms
# used to support an entropy seeding based on sampling_dict['sampling_type'] specification
# defaults to False when not specified, can also pass as one of
# {'numeric', 'categoric', 'binary', False}
# numeric is for transforms similar to DPnb/DPmm/DPrt which have a binomial and distribution sampling
# categoric is for transforms similar to DPod/DPmc which have a binomial and a choice sampling
# binary is for transforms similar to an alternate DPbn configuration which only have a binomial sampling
# False is for transforms without sampling_dict['sampling_type'] specification support
#___________________________________________________________________________
#Other clarifications:
#Note that NArowtype is associated with transformation inputs
#including for a category's use as a root category and as a tree category
#MLinfilltype is associated with transformation outputs
#for a category's use as a tree category
```
For example, to populate a custom transformation category 'newt' that uses internally defined transformation functions _process_mnmx and _postprocess_mnmx:
```
processdict = {'newt' : {'dualprocess' : am._process_mnmx,
'singleprocess' : None,
'postprocess' : am._postprocess_mnmx,
'NArowtype' : 'numeric',
'MLinfilltype' : 'numeric'}}
```
Note that these processing functions won't be applied when 'newt' is assigned as a root category to a column in assigncat, unless the category is also populated as an entry to one of the associated family tree primitives in the transformdict entry.
Note that all of the processing functions can be omitted or populated with values of None, as may be desired when the category is primarily intended for use as a root category and not a tree category. (If in such case the category is applied as a tree category when accessed no transforms will be applied and no downstream offspring will be inspected when applicable).
Optionally, some additional values can be incorporated into the processdict to
support inversion for a transformation category:
```
#for example
processdict = {'newt' : {'dualprocess' : am._process_mnmx,
'singleprocess' : None,
'postprocess' : am._postprocess_mnmx,
'inverseprocess' : am._inverseprocess_mnmx,
'info_retention' : True,
'NArowtype' : 'numeric',
'MLinfilltype' : 'numeric'}}
#Where 'inverseprocess' is a function to invert the forward pass transformation.
#And 'info_retention' is boolean to signal True when there is full information retention
#in recovered data from inversion.
```
Optionally, a user can set alternate default assignparam parameters to be passed to the associated
transformation functions by including the 'defaultparams' key. These updates to default
parameters will still be overwritten if user manually specifies parameters in assignparam.
```
#for example to default to an alternate noise profile for DPmm
processdict = {'DLmm' : {'dualprocess' : am._process_DPmm,
'singleprocess' : None,
'postprocess' : am._postprocess_DPmm,
'inverseprocess' : am._inverseprocess_UPCS,
'info_retention' : True,
'defaultparams' : {'noisedistribution' : 'laplace'},
'NArowtype' : 'numeric',
'MLinfilltype' : 'numeric'}}
```
Since specification of transformation functions and other processdict entries can be kind of cumbersome in order
to dig out from the codebase naming conventions e.g. for internally defined functions, a
simplification is available when populating a processdict for a user passed entry by
way of the 'functionpointer' entry. When a functionpointer category entry is included,
the transformation functions and other entries that are not already specified are
automatically populated based on entries found in processdict entries of the pointer.
For cases where a functionpointer points to a processdict entry that itself has a functionpointer
entry, chains of pointers are followed until an entry without functionpointer is reached.
defaultparams entries of each pointer link are also accessed for update, and if the prior category
specification contains any redundant defaultparams entries with those found in a pointer target
category the prior category entries take precedence. Similarly for chains of pointers the entries
specified in nearer links take precedence over entries further down the chain.
In other words, if you are populating a new processdict transformation
category and you want the transformation functions and other entries to match an existing category, you
can simply pass the existing category as a functionpointer entry to the new category.
Here is an example if we want to match the DLmm category demonstrated above for a new
category 'newt' but with an alternate 'NArowtype' as an arbitrary example, such as would be useful if we
wanted to define an alternate DLmm family tree in a corresponding newt transformdict entry.
```
processdict = {'newt' : {'functionpointer' : 'DLmm',
'NArowtype' : 'positivenumeric'}}
```
Or an even simpler approach if no overwrites are desired could just be to copy everything.
```
processdict = {'newt' : {'functionpointer' : 'DLmm'}}
```
We can also use functionpointer when overwriting a category defined internal to library. For
example, if we wanted to change the default parameters applied with the mnmx category, we
could overwrite the mnmx process_dict entry such as to match the current entry but with
updated defaultparams.
```
processdict = {'mnmx' : {'functionpointer' : 'mnmx',
'defaultparams' : {'floor' : True}}}
```
Note that processdict entries can be defined to overwrite existing category entries defined in the internal library.
For example, if we wanted our default numerical scaling to be by min-max instead of z-score normalization, one way we could accomplish
this is to overwrite the 'nmbr' transformation functions accessed from processdict, where nmbr is the default root category applied to
numeric sets under automation, whose family tree has nmbr as a tree category entry for accessing the transformation functions.
(Other default root categories under automation are detailed further below in the
"[Default Tranformations](https://github.com/Automunge/AutoMunge#default-transformations)" section.) This approach differs
from overwriting the nmbr transformdict entry as demonstrated above in that the update would be carried through to all instances where nmbr is
accessed as a tree category across the library of family trees.
```
processdict = {'nmbr' : {'functionpointer' : 'mnmx'}}
```
Processing functions following the conventions of those defined internal to the library
can be passed to dualprocess / singleprocess / postprocess / inverseprocess
Or for the greatly simplified conventions available
for custom externally defined transformation functions
can be passed to custom_train / custom_test / custom_inversion.
Demonstrations for custom transformation functions are documented further below in the
section Custom Transformation Functions. (Note that in cases of redundancy, populated
custom_train functions take precedence over the dualprocess / singleprocess conventions).
Note that the defaultinfill option is specific to the custom_train convention and also documented below.
Note that many of the transformation functions in the library have support for distinguishing between
inplace operations vs returning a column copied from the input. Inplace operations are expected to
reduce memory overhead. When not specified the library assumes a function supports the inplace option. Function passed in the custom_train convention automatically support inplace so specification is not required with user defined functions. For functions following the dualprocess/singleprocess conventions, some transforms may not support inplace, in which case a user will need to specify (although if using functionpointer to access the transforms this will be automatic).
```
#for example
processdict = {'newt' : {'dualprocess' : am._process_text,
'singleprocess' : None,
'postprocess' : am._postprocess_text,
'inverseprocess' : am._inverseprocess_text,
'info_retention' : True,
'inplace_option' : False,
'NArowtype' : 'justNaN',
'MLinfilltype' : 'multirt'}}
```
The optional labelctgy specification for a category's processdict entry is intended for use in featureselection when the category is applied as a root category to a label set and the category's family tree returns the labels in multiple configurations. The labelcty entry serves as a specification of a specific primitive entry category either as entered in the upstream primitives of the root category or one of the downstream primitives of subsequent generations, which primitive entry category will serve as the label basis when applying feature selection. (labelctgy is also inspected with oversampling in current implementation.)
Further detail on the processdict data format provided in the essay [Data Structure](https://medium.com/automunge/data-structure-59e52f141dd6).
* evalcat: modularizes the automated evaluation of column properties for assignment
of root transformation categories, allowing user to pass custom functions for this
purpose. Passed functions should follow format:
```
def evalcat(df, column, randomseed, eval_ratio, numbercategoryheuristic, powertransform, labels = False):
"""
#user defined function that takes as input a dataframe df and column id string column
#evaluates the contents of cells and classifies the column for root category of
#transformation (e.g. comparable to categories otherwise assigned in assigncat)
#returns category id as a string
"""
...
return category
```
And could then be passed to automunge function call such as:
```
evalcat = evalcat
```
I recommend using the \_evalcategory function defined in master file as starting point.
(Minus the 'self' parameter since defining external to class.) Note that the
parameters eval_ratio, numbercategoryheuristic, powertransform, and labels are passed as user
parameters in automunge(.) call and only used in \_evalcategory function, so if user wants
to repurpose them totally can do so. (They default to .5, 255, False, False.) Note evalcat
defaults to False to use built-in \_evalcategory function. Note evalcat will only be
applied to columns not assigned in assigncat. (Note that columns assigned to 'eval' / 'ptfm'
in assigncat will be passed to this function for evaluation with powertransform = False / True
respectively.) Note that function currently uses python collections library and datetime as dt.
* ppd_append: defaults to False, accepts as input a prior populated postprocess_dict for
purposes of adding new features to a prior trained model. Basically the intent is that there
are some specialized workflows where models in decision tree paradigms may have new features
incorporated without retraining the model with the prior training data.
In such cases a user may desire to add new features to a prior populated postprocess_dict to enable
pushbutton preprocessing including the original training data basis coupled with basis of newly added features.
In order to do so, automunge(.) should be called with just the new features passed as df_train, and the prior
populated postprocess_dict passed to ppd_append. This will result in the newly populated postprocess_dict being saved
as a new subentry in the returned original postprocess_dict, such that to prepare additional data including the original
features and new features, they combined features can be colletively passed as df_test to postmunge(.) (which should
have new features appended on right side of original features). postmunge(.) will prepare the original features
and new features seperately, including a seperate basis for ML infill, Binary, and etc, and will return a
combined prepared test data. Includes inversion support and support for performing more than one round of new
feature appendings. Note that newly added features are
limited to training features, labels and ID input should be excluded. Note that inversion numpy support not available with
combined features and test feature inversion support is limited to the inversion='test' case. (If it is desired to include
new features in the prior features' ML infill basis and visa versa, instead of applying ppd_append just pass everything
to automunge(.) and populate a new postprocess_dict - noting this might justify retraining the original model due to
a new ML infill basis of original features). (Note that when applied in conjunction with entropy_seeding for noise injection the same seeds will be applied with each set, for sampling_type's other than default we recommend sampling internally with a custom generator as opposed to passing externally sampled seeds.). Please note that ppd_append not supported in conjunction with activating dupl_rows postmunge parameter.
* entropy_seeds: defaults to False, accepts integer or list / flattened array of integers which may serve as supplemental sources of entropy for noise injections with DP transforms, we suggest integers in range {0:(2 \*\* 31 - 1)} to align with int32 dtype. entropy_seeds are specific to an automunge(.) or postmunge(.) call, in other words they are not returned in the populated postprocess_dict. Please note that for determinatino of how many entropy seeds are needed for various sampling_dict['sampling_type'] scenarios, can inspect postprocess_dict['sampling_report_dict'], where if insufficient seeds are available for these scenarios additional seeds will be derived with the extra_seed_generator. Note that the sampling_report_dict will report requirements separately for train and test data and in the bulk_seeds case will have a row count basis. (If not passing test data to automunge(.) the test budget can be omitted.) Note that the entropy seed budget only accounts for preparing one set of data, for the noise_augment option we recommend passing a custom extra_seed_generator with a sampling_type specification, which will result in internal samplings of additional entropy seeds for each additional noise_augment duplicate (or for the bulk_seeds case with external sampling can increased entropy_seed budget proportional to the number of additional duplicates with noise).
* random_generator: defaults to False, accepts numpy.random.Generator formatted random samplers which are applied for noise injections with DP transforms. Note that random_generator may optionally be applied in conjunction with entropy_seeds. When not specified applies numpy.random.PCG64. Examples of alternate generators could be a generator initialized with the [QRAND](https://github.com/pedrorrivero/qrand) library to sample from a quantum circuit. Or if the alternate library does not have numpy.random support, their output can be channeled as entropy_seeds for a similar benefit. random_generator is specific to an automunge(.) or postmunge(.) call, in other words it is not returned in the populated postprocess_dict. Please note that numpy formatted generators of both forms e.g. np.random.PCG64 or np.random.PCG64() may be passed, in the latter case any entropy seeding to this generator will be turned off automatically.
* sampling_dict: defaults to False, accepts a dictionary including possible keys of {sampling_type, seeding_type, sampling_report_dict, stochastic_count_safety_factor, extra_seed_generator, sampling_generator}. sampling_dict is specific to an automunge(.) or postmunge(.) call, in other words they are not returned in the populated postprocess_dict.
- sampling_dict['sampling_type'] accepts a string as one of {'default', 'bulk_seeds', 'sampling_seed', 'transform_seed'}
- default: every sampling receives a common set of entropy_seeds per user specification which are shuffled and passed to each call
- bulk_seeds: every sampling receives a unique supplemental seed for every sampled entry for sampling from sampling_generator (expended seed counts dependent on train/test/both configuration and numbers of rows). This scenario also defaults to sampling_dict['seeding_type'] = 'primary_seeds'
- sampling_seed: every sampling operation receives one supplemental seed for sampling from sampling_generator (expended seed counts dependent on train/test/both configuration)
- transform_seed: every noise transform receives one supplemental seed for sampling from sampling_generator (expended seed counts are the same independant of train/test/both configuration)
- sampling_dict['seeding_type'] defaults to 'supplemental_seeds' or 'primary_seeds' as described below, where 'supplemental_seeds' means that entropy seeds are integrated into np.random.SeedSequence with entropy seeding from the operating system. Also accepts 'primary_seeds', in which user passed entropy seeds are the only source of seeding. Please note that 'primary_seeds' is used as the default for the bulk_seeds sampling_type and 'supplemental_seeds' is used as the default for other sampling_type options.
- sampling_dict['sampling_report_dict'] defaults as False, accepts a prior populated postprocess_dict['sampling_report_dict'] from an automunge(.), call if this is not received it will be generated internally. sampling_report_dict is a resource for determining how many entropy_seeds are needed for various sampling_type scnearios.
- sampling_dict['stochastic_count_safety_factor']: defaults to 0.15, accepts float 0-1, is associated with the bulk_seeds sampling_type case and is used as a multiplier for number of seeds populated for sampling operations with a stochastic number of entries
- sampling_dict['sampling_generator']: used to specify which generator will be used for sampling operations other than generation of additional entropy_seeds. defaults to 'custom' (meaning the passed random_generator or when unspecified the default PCG64), and accepts one of {'custom', 'PCG64', 'MersenneTwister'}
- sampling_dict['extra_seed_generator']: used to specify which generator will be used to sample additional entropy_seeds when more are needed to meet requirements of sampling_report_dict, defaults to 'custom' (meaning the passed random_generator or when unspecified the default PCG64), and accepts one of {'custom', 'PCG64', 'MersenneTwister', 'off', 'sampling_generator'}, where sampling_generator matches specification for sampling_generator, and 'off' turns off sampling of additional entropy seeds.
* privacy_encode: a boolean marker _{True, False, 'private'}_ defaults to False. For cases where sets
are returned as pandas dataframe, a user may desire privacy preserving encodings in which
column headers of received data are anonymized. This parameter when activated as True shuffles the order of columns and
replaces headers and suffixes with integers. ID sets are not anonymized. Label sets are only anonymized in the 'private' scenario. Note that conversion information is available in returned postprocess_dict under
privacy reports (in other words, privacy can be circumvented if user has access to an unencrypted postprocess_dict).
When activated the postprocess_dict returned columntype_report captures the privacy encodings and the column_map is erased.
Note that when activated consistent convention is applied in postmunge and inversion is supported.
When privacy_encode is activated postmunge(.) printstatus is only available as False or 'silent'.
The 'private' option also activates shuffling of rows in train and test data for both automunge(.) and postmunge(.)
and resets the dataframe indexes (although retains the Automunge_index column returned in the ID set).
Thus prepared data in the 'private' option can be kept row-wise anonymous by not sharing the returned ID set.
We recommend considering use of the encrypt_key parameter in conjunction with privacy_encode. Please note that when
privacy_encode is activated postmunge options for featureeval and driftreport are not available to avoid data leakage channel.
It may be beneficial in privacy sensitive applications to inject noise via DP transforms and apply distribution conversions to
numeric features e.g. via DPqt or DPbx. Further detail on privacy encoding provided in the essay [Private Encodings with Automunge](https://medium.com/automunge/private-encodings-with-automunge-f73dcdb57289).
* encrypt_key: as one of {False, 16, 24, 32, bytes} (where bytes means a bytes type object with length of 16, 24, or 32) defaults to False, other scenarios all result in an encryption of the returned postprocess_dict. 16, 24, and 32 refer to the block size, where block size of 16 aligns with 128 bit encryption, 32 aligns with 256 bit. When encrypt_key is passed as an integer, a returned encrypt_key is derived and returned in the closing printouts. This returned printout should be copied and saved for use with the postmunge(.) encrypt_key parameter. In other words, without this encryption key, user will not be able to prepare additional data in postmunge(.) with the returned postprocess_dict. When encrypt_key is passed as a bytes object (of length 16, 24, or 32), it is treated as a user specified encryption key and not returned in printouts. When data is encrypted, the postprocess_dict returned from automunge(.) is still a dictionary that can be downloaded and uploaded with pickle, and based on which scenario was selected by the privacy_encode parameter (for scenarios other than 'private'), the returned postprocess_dict will contain some public entries that are not encrypted, such as ['columntype_report', 'label_columntype_report', 'privacy_encode', 'automungeversion', 'labelsencoding_dict', 'FS_sorted', 'column_map', 'sampling_report_dict'] - where FS_sorted and column_map are ommitted when privacy_encode is not False and all public entries are omitted when privacy_encode = 'private'. The encryption key, as either returned in printouts or based on user specification, can then be passed to the postmunge(.) encrypt_key parameter to prepare additional data. The only postmunge operation available without the encryption key is for label inverison (unless privacy_encode is 'private'). Thus privacy_encode may be fully private, and a user with access to the returned postprocess_dict will not be able to invert training data without the encryption key. Please note that the AES encryption is applied with the [pycrypto](https://github.com/pycrypto/pycrypto) python library which requires installation in order to run (we found there were installations available via conda install).
* printstatus: user can pass _True/False/'summary'/'silent'_ indicating whether the function will print
status of processing during operation. Defaults to 'summary' to return a summary of returned sets and any feature importance or drift reports. True returns all printouts. When False only error
message printouts generated. When 'summary' only reports and summary are printed. When 'silent' no printouts are generated. Note that all of these scenarios are also available by the logger parameter regardless of printstatus setting.
* logger: user can initialize a dictionary externally, e.g. logger={}, and pass it to this parameter, e.g. logger=logger. automunge(.) will then log every printout scenario and validation result as they are being accessed in this external dictionary, which can then either be inspected for troubleshooting in cases of a halt scenario or archived. The report scenarios are loosely aligned with python logging module and also related to the tiers of printstatus.
```
logger = {}
train, train_ID, labels, \
val, val_ID, val_labels, \
test, test_ID, test_labels, \
postprocess_dict = \
am.automunge(df_train,
logger=logger,
printstatus='silent')
#and then, e.g.
print(logger['debug_report'])
print(logger['info_report'])
print(logger['warning_report'])
#or validation results available in logger['validations']
```
Ok well we'll demonstrate further below how to build custom transformation functions,
for now you should have sufficient tools to build sets of transformation categories
using the family tree primitives and etc.
...
# postmunge(.)
The postmunge(.) function is intended to consistently prepare subsequently available
and consistently formatted train or test data with just a single function call. It
requires passing the postprocess_dict object returned from the original application
of automunge and that the passed test data have consistent column header labeling as
the original train set (or for Numpy arrays consistent order of columns). Processing
data with postmunge(.) is considerably more efficient than automunge(.) since it does
not require the overhead of the evaluation methods, the derivation of transformation
normalization parameters, and/or the training of models for ML infill.
```
#for postmunge(.) function to prepare subsequently available data
#using the postprocess_dict object returned from original automunge(.) application
#Remember to initialize automunge
from Automunge import *
am = AutoMunge()
#Then we can run postmunge function as:
test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict, df_test,
testID_column = False,
pandasoutput = 'dataframe', printstatus = 'summary', inplace = False,
dupl_rows = False, TrainLabelFreqLevel = False,
featureeval = False, traindata = False, noise_augment = 0,
driftreport = False, inversion = False,
returnedsets = True, shuffletrain = False,
entropy_seeds = False, random_generator = False, sampling_dict = False,
randomseed = False, encrypt_key = False, logger = {})
```
Or to run postmunge(.) with default parameters we simply need the postprocess_dict
object returned from the corresponding automunge(.) call and a consistently formatted
additional data set.
```
test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict, df_test)
```
## postmunge(.) returned sets:
Here now are descriptions for the returned sets from postmunge, which
will be followed by descriptions of the parameters which can be passed to
the function. Default is that returned sets are pandas dataframes, with
single column sets returned as pandas series.
For dataframes, data types of returned columns are based on the transformation applied,
for example columns with boolean integers are cast as int8, ordinal encoded
columns are given a conditional type based on the size of encoding space as either
uint8, uint16, or uint32. Continuous sets are cast as float16, float32, or float64
based on the automunge(.) floatprecision parameter. And direct passthrough columns
via excl transform retain the received data type.
* test: the set of features, consistently encoded and normalized as the
training data, that can be used to generate predictions from a model
trained with the train set from automunge.
* test_ID: the set of ID values corresponding to the test set. Also included
in this set is a derived column titled 'Automunge_index',
this column serves as an index identifier for order of rows as they were
received in passed data, such as may be beneficial when data is shuffled.
For more information please refer to writeup for the testID_column parameter.
If the received df_test had a non-ranged integer index,
it is extracted and returned in this set.
* test_labels: a set of numerically encoded labels corresponding to the
test set if a label column was passed. Note that the function
assumes the label column is originally included in the train set. Note
that if the labels set is a single column a returned dataframe is flattened
to a pandas Series or a returned Numpy array is also
flattened (e.g. [[1,2,3]] converted to [1,2,3] ).
* postreports_dict: a dictionary containing entries for following:
- postreports_dict['featureimportance']: results of optional feature
importance evaluation based on parameter featureeval. (See automunge(.)
notes above for feature importance printout methods.)
- postreports_dict['finalcolumns_test']: list of columns returned from
postmunge
- postreports_dict['driftreport']: results of optional drift report
evaluation tracking properties of postmunge data in comparison to the
original data from automunge call associated with the postprocess_dict
presumably used to train a model. Results aggregated by entries for the
original (pre-transform) list of columns, and include the normalization
parameters from the automunge call saved in postprocess_dict as well
as the corresponding parameters from the new data consistently derived
in postmunge
- postreports_dict['sourcecolumn_drift']: results of optional drift report
evaluation tracking properties of postmunge data derived from source
columns in comparison to the original data from automunge(.) call associated
with the postprocess_dict presumably used to train a model.
- postreports_dict['pm_miscparameters_results']: reporting results of validation tests performed on parameters and passed data
```
#the results of a postmunge driftreport assessment are returned in the postreports_dict
#object returned from a postmunge call, as follows:
postreports_dict = \
{'featureimportance':{(not shown here for brevity)},
'finalcolumns_test':[(derivedcolumns)],
'driftreport': {(sourcecolumn) : {'origreturnedcolumns_list':[(derivedcolumns)],
'newreturnedcolumns_list':[(derivedcolumns)],
'drift_category':(category),
'orignotinnew': {(derivedcolumn):{'orignormparam':{(stats)}},
'newnotinorig': {(derivedcolumn):{'newnormparam':{(stats)}},
'newreturnedcolumn':{(derivedcolumn):{'orignormparam':{(stats)},
'newnormparam':{(stats)}}}},
'rowcount_basis': {'automunge_train_rowcount':#, 'postmunge_test_rowcount':#},
'sourcecolumn_drift': {'orig_driftstats': {(sourcecolumn) : (stats)},
'new_driftstats' : {(sourcecolumn) : (stats)}}}
#the driftreport stats for derived columns are based on the normalization_dict entries from the
#corresponding processing function associated with that column's derivation
#here is an example of source column drift assessment statistics for a positive numeric root category:
postreports_dict['sourcecolumn_drift']['new_driftstats'] = \
{(sourcecolumn) : {'max' : (stat),
'quantile_99' : (stat),
'quantile_90' : (stat),
'quantile_66' : (stat),
'median' : (stat),
'quantile_33' : (stat),
'quantile_10' : (stat),
'quantile_01' : (stat),
'min' : (stat),
'mean' : (stat),
'std' : (stat),
'MAD' : (stat),
'skew' : (stat),
'shapiro_W' : (stat),
'shapiro_p' : (stat),
'nonpositive_ratio' : (stat),
'nan_ratio' : (stat)}}
```
...
## postmunge(.) passed parameters
```
#for postmunge(.) function on subsequently available test data
#using the postprocess_dict object returned from original automunge(.) application
#Remember to initialize automunge
from Automunge import *
am = AutoMunge()
#Then we can run postmunge function as:
test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict, df_test,
testID_column = False,
pandasoutput = 'dataframe', printstatus = 'summary', inplace = False,
dupl_rows = False, TrainLabelFreqLevel = False,
featureeval = False, traindata = False, noise_augment = 0,
driftreport = False, inversion = False,
returnedsets = True, shuffletrain = False,
entropy_seeds = False, random_generator = False, sampling_dict = False,
randomseed = False, encrypt_key = False, logger = {})
```
* postprocess_dict: this is the dictionary returned from the initial
application of automunge(.) which included normalization parameters to
facilitate consistent processing of additional train or test data to the
original processing of the train set. This requires a user to remember
to download the dictionary at the original application of automunge,
otherwise if this dictionary is not available a user can feed this
subsequent test data to the automunge along with the original train data
exactly as was used in the original automunge(.) call.
* df_test: a pandas dataframe or numpy array containing a structured
dataset intended for use to generate predictions from a machine learning
model trained from the automunge returned sets. The set must be consistently
formatted as the train set with consistent order of columns and if labels are
included consistent labels. If desired the set may include an ID column. The
tool supports the inclusion of non-index-range column as index or multicolumn
index (requires named index columns). Such index types are added to the
returned "ID" sets which are consistently shuffled and partitioned as the
train and test sets. If numpy array passed any ID columns from train set should
be included. Note that if a label column is included consistent with label column from
automunge(.) call it will be automatically applied as label and similarly for ID columns.
If desired can also be passed as a dataframe with only the label columns and features ommitted.
* testID_column: defaults to False, user can pass a column header or list of column headers
for columns that are to be segregated from the df_test set for return in the test_ID
set (consistently shuffled and partitioned when applicable). For example this may
be desired for an index column or any other column that the user wishes to exclude from
the ML infill basis. Defaults to False, which can be used for cases where the df_test
set does not contain any ID columns, or may also be passed as the default of False when
the df_test ID columns match those passed to automunge(.) in the trainID_column parameter,
in which case they are automatically given comparable treatment. Thus, the primary intended use
of the postmunge(.) testID_column parameter is for cases where a df_test has ID columns
different from those passed with df_train in automunge(.). Note that an integer column index
or list of integer column indexes may also be passed such as if the source dataset was a numpy array.
(In general though when passing data as numpy arrays we recommend matching ID columns to df_train.) In cases of unnamed
non-range integer indexes, they are automatically extracted and returned in the ID sets as 'Orig_index'.
If a user would like to include a column both in the features for encoding and the ID sets for original form
retention, they can pass testID_column as a list of two lists, e.g. [list1, list2], where the first
list may include ID columns to be struck from the features and the second list may include ID columns
to be retained in the features. (We recommend only using testID_column specification for cases where df_test
includes columns that weren't present in the original df_train, otehrwise it is automatic.)
* pandasoutput: selects format of returned sets. Defaults to _'dataframe'_
for returned pandas dataframe for all sets. Dataframes index is not always preserved, non-integer indexes are extracted to the ID sets,
and automunge(.) generates an application specific range integer index in ID sets
corresponding to the order of rows as they were passed to function). If set to _True_, features and ID sets are comparable, and single column label sets are converted to Pandas Series instead of dataframe. If set to _False_
returns numpy arrays instead of dataframes. Note that the dataframes will have column
specific data types, or returned numpy arrays will have a single data type.
* printstatus: user can pass _True/False/'summary'/'silent'_ indicating whether the function will print
status of processing during operation. Defaults to 'summary' to return a summary of returned sets and any feature importance or drift reports. True returns all printouts. When False only error
message printouts generated. When 'summary' only reports and summary are printed. When 'silent' no printouts are generated.
* inplace: defaults to False, when True the df_test passed to postmunge(.)
is overwritten with the returned test set. This reduces memory overhead.
For example, to take advantage with reduced memory overhead you could call postmunge(.) as:
```
df_test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict, df_test, inplace = True)
```
* dupl_rows: can be passed as _(True/False\)_ which indicates
if duplicate rows will be consolidated to single instance in returned sets. (In
other words, if same row included more than once, it will only be returned once.)
Defaults to False for not activated. True applies consolidation to test set. Note
this is applied prior to TrainLabelFreqLevel if elected. As implemented this does
not take into account duplicate rows in test data which have different labels,
only one version of features/label pair is returned. Please note dupl_rows option
not recommended in cases where automunge(.) applied the ppd_append option
and will return a printout and validation result as dupl_rows_ppd_append_postmunge_valresult.
* TrainLabelFreqLevel: a boolean identifier _(True/False)_ which indicates
if the TrainLabelFreqLevel method will be applied to oversample test
data associated with underrepresented labels. The method adds multiples
to test data rows for those labels with lower frequency resulting in
an (approximately) levelized frequency. This defaults to False. Note that
this feature may be applied to numerical label sets if the assigncat processing
applied to the set in automunge(.) had included aggregated bins, such
as for example 'exc3' for pass-through numeric with standard deviation bins,
or 'exc4' for pass-through numeric with powers of ten bins. Note this
method requires the inclusion of a designated label column. Further detail
on oversampling provided in the essay [Oversampling with Automunge](https://medium.com/automunge/oversampling-with-automunge-3e69e500a32e).
* featureeval: a boolean identifier _(True/False)_ to activate a feature
importance evaluation, comparable to one performed in automunge but based on the
test set passed to postmunge. Defaults to False. The results are returned in the
postreports_dict object returned from postmunge as postreports_dict['featureimportance'].
The results will also be printed out if printstatus is activated. Note that sorted
feature importance results are returned in postreports_dict['FS_sorted'], including
columns sorted by metric and metric2. Relies on ML_cmnd parameters from original
automunge(.) call.
* driftreport: defaults to False, accepts one of {False, True, 'efficient', 'report_effic', 'report_full'}.
Activates a drift report evaluation, in which drift statistics are collected
for comparison between features in the train data that was passed to automunge(.) verses test data
passed to postmunge(.). May include drift statistics associated with the raw data found
in the input features, and may also include drift statistics associated with the returned
data derived features as collected during derivations and recorded in the normalization
parameters of a transformation. The results are returned in the
postreports_dict object returned from postmunge as postreports_dict['driftreport'] and postreports_dict['sourcecolumn_drift'].
Additional drift statistics for columns returned from a PCA or Binary dimensionality reduction are
available in conjunction with the driftreport = True scenario, which are returned in postreports_dict['dimensionality_reduction_driftstats'].
The results will also be printed out if printstatus is activated. Defaults to _False_, and:
- _False_ means no postmunge drift assessment is performed
- _True_ means an assessment is performed for both the source column and derived column
stats
- _'efficient'_ means that a postmunge drift assessment is only performed on the source
columns (less information but better latency / computational efficiency)
- _'report_effic'_ means that the efficient assessment is performed (only source column stats) and returned with
no processing of data
- _'report_full'_ means that the full assessment is performed for both the source column and derived column
and returned with no processing of data
Note that for transforms returning multi column sets, the drift stats will only be reported for first
column in the categorylist. Note that driftreport is not available in conjunction with privacy encoding.
Further detail on drift reports are provided in the essay [Drift Reporting with Automunge](https://medium.com/automunge/drift-reporting-with-automunge-6a83eecbb253).
* inversion: defaults to False, may be passed as one of {False, 'test', 'labels', 'denselabels', a list, or a set},
where ‘test’ or ‘labels’ activate an inversion operation to recover, by a set of transformations
mirroring the inversion of those applied in automunge(.), the form of test data or labels
data to consistency with the source columns as were originally passed to automunge(.). As further clarification,
passing inversion='test' should be in conjunction with passing df_test = test (where test is a dataframe of train
or test data returned from an automunge or postmunge call), and passing inversion='labels' should be in conjunction
with passing df_test = test_labels (where test_labels is a dataframe of labels or test_labels returned from an
automunge or postmunge call). When inversion is passed as a list, accepts list of source column or returned column
headers for inversion targets. When inversion is passed as a set, accepts a set with single entry of a returned
column header serving as a custom target for the inversion path. (inversion list or set specification not supported when the automunge(.) privacy_encode option was activated.) 'denselabels' is for label set inversion in which
labels were prepared in multiple formats, such as to recover the original form on each basis for comparison (currently supported for single labels_column case).
The inversion operation is supported by the optional process_dict entry 'info_retention' and required for inversion process_dict entry
'inverseprocess' (or 'custom_inversion'). Note that columns are only recovered for those sets in which a path of
inversion was available by these processdict entries. Note that the path of
inversion is prioritized to those returned sets with information retention and availability
of inverseprocess functions. Note that both feature importance and Binary dimensionality
reduction is supported, support is not expected for PCA. Note that recovery of label
sets with label smoothing is supported. Note that during an inversion operation the
postmunge function only considers the parameters postprocess_dict, df_test, inversion,
pandasoutput, and/or printstatus. Note that in an inversion operation the
postmunge(.) function returns three sets: a recovered set, a list of recovered columns, and
a dictionary logging results of the path selection process and validation results. Please note that the general
convention in library is that entries not successfully recovered from inversion may be recorded
corresponding to the imputation value from the forward pass, NaN, or some other transformation function specific convention. Further
details on inversion is provided in the essay [Announcing Automunge Inversion](https://medium.com/automunge/announcing-automunge-inversion-18226956dc).
Here is an example of a postmunge call with inversion.
```
df_invert, recovered_list, inversion_info_dict = \
am.postmunge(postprocess_dict, test_labels, inversion='labels',
pandasoutput=True, printstatus='summary', encrypt_key = False)
```
Here is an example of a process_dict entry with the optional inversion entries included, such
as may be defined by user for custom functions and passed to automunge(.) in the processdict
parameter:
```
process_dict.update({'mnmx' : {'dualprocess' : self.process_mnmx,
'singleprocess' : None,
'postprocess' : self.postprocess_mnmx,
'inverseprocess' : self.inverseprocess_mnmx,
'info_retention' : True,
'NArowtype' : 'numeric',
'MLinfilltype' : 'numeric',
'labelctgy' : 'mnmx'}})
```
* traindata: boolean _{True, False, 'train_no_noise', 'test_no_noise'}_, defaults to False. Only inspected when a transformation
is called that treats train data different than test data (currently only relevant to
DP family of transforms for noise injection to train sets or label smoothing transforms in smth family). When passed
as True treats df_test as a train set for purposes of these specific transforms, otherwise
default of False treats df_test as a test set (which turns off noise injection for DP transforms). As you would expect, 'train_no_noise' and 'test_no_noise' designates data passed to postmunge(.) as train or test data but turns off noise injections.
* noise_augment: accepts type int or float(int) >=0. Defaults to 0. Used to specify
a count of additional duplicates of test data prepared and concatenated with the
original test set. Intended for use in conjunction with noise injection, such that
the increased size of training corpus can be a form of data augmentation.
Takes into account the traindata parameter passed to postmunge(.) for
distinguishing whether to treat the duplicates as train or test data for purposes of noise injections.
Note that injected noise will be uniquely randomly sampled with each duplicate. When noise_augment
is received as a dtype of int, one of the duplicates will be prepared without noise. When
noise_augment is received as a dtype of float(int), all of the duplicates will be prepared
with noise. When shuffletrain is activated the duplicates are collectively shuffled, and can distinguish
between duplicates by the original df_test.shape in comparison to the ID set's Automunge_index.
Please be aware that with large dataframes a large duplicate count may run into memory constraints,
in which case additional duplicates can be prepared in additional postmunge(.) calls. Note that the entropy seed budget only accounts for preparing one set of data, for the noise_augment option with entropy seeding we recommend passing a custom extra_seed_generator with a sampling_type specification, which will result in internal samplings of additional entropy seeds for each additional noise_augment duplicate (or for the bulk_seeds case with external sampling can increase entropy_seed budget proportional to the number of additional duplicates with noise).
* returnedsets: Can be passed as one of _{True, False, 'test_ID', 'test_labels', 'test_ID_labels'}_.
Designates the composition of the sets returned
from a postmunge(.) call. Defaults to True for the full composition of five returned sets.
With other options postmunge(.) only returns a single set, where for False that set consists
of the test set, or for the other options returns the test set concatenated with the ID,
labels, or both. For example:
```
#in default of returnedsets=True, postmunge(.) returns five sets, such as this call:
test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict, df_test, returnedsets = True)
#for other returnedset options, postmunge(.) returns just a single set, the test set:
test = \
am.postmunge(postprocess_dict, df_test, returnedsets = False)
#Note that if you want to access the column labels for an appended ID or labels set,
#They can be accessed in the postprocess_dict under entries for
postprocess_dict['finalcolumns_labels']
postprocess_dict['finalcolumns_trainID']
```
* shuffletrain: can be passed as one of _{True, False}_ which indicates if the rows in
the returned sets will be (consistently) shuffled. This value defaults to False.
* entropy_seeds: defaults to False, accepts integer or list / flattened array of integers which may serve as supplemental sources of entropy for noise injections with DP transforms, we suggest integers in range {0:(2 \*\* 31 - 1)} to align with int32 dtype. entropy_seeds are specific to an automunge(.) or postmunge(.) call, in other words they are not returned in the populated postprocess_dict. Please note that for determinatino of how many entropy seeds are needed for various sampling_dict['sampling_type'] scenarios, can inspect postprocess_dict['sampling_report_dict'], where if insufficient seeds are available for these scenarios additional seeds will be derived with the extra_seed_generator. Note that the sampling_report_dict will report requirements separately for train and test data and in the bulk_seeds case will have a row count basis. (If not passing test data to automunge(.) the test budget can be omitted.) Note that the entropy seed budget only accounts for preparing one set of data, for the noise_augment option we recommend passing a custom extra_seed_generator with a sampling_type specification, which will result in internal samplings of additional entropy seeds for each additional noise_augment duplicate (or for the bulk_seeds case with external sampling can increased entropy_seed budget proportional to the number of additional duplicates with noise).
* random_generator: defaults to False, accepts numpy.random.Generator formatted random samplers which are applied for noise injections with DP transforms. Note that random_generator may optionally be applied in conjunction with entropy_seeds. When not specified applies numpy.random.PCG64. Examples of alternate generators could be a generator initialized with the [QRAND](https://github.com/pedrorrivero/qrand) library to sample from a quantum circuit. Or if the alternate library does not have numpy.random support, their output can be channeled as entropy_seeds for a similar benefit. random_generator is specific to an automunge(.) or postmunge(.) call, in other words it is not returned in the populated postprocess_dict. Please note that numpy formatted generators of both forms e.g. np.random.PCG64 or np.random.PCG64() may be passed, in the latter case any entropy seeding to this generator will be turned off automatically.
* sampling_dict: defaults to False, accepts a dictionary including possible keys of {sampling_type, seeding_type, sampling_report_dict, stochastic_count_safety_factor, extra_seed_generator, sampling_generator}. sampling_dict is specific to an automunge(.) or postmunge(.) call, in other words they are not returned in the populated postprocess_dict.
- sampling_dict['sampling_type'] accepts a string as one of {'default', 'bulk_seeds', 'sampling_seed', 'transform_seed'}
- default: every sampling receives a common set of entropy_seeds per user specification which are shuffled and passed to each call
- bulk_seeds: every sampling receives a unique supplemental seed for every sampled entry for sampling from sampling_generator (expended seed counts dependent on train/test/both configuration and numbers of rows). This scenario also defaults to sampling_dict['seeding_type'] = 'primary_seeds'
- sampling_seed: every sampling operation receives one supplemental seed for sampling from sampling_generator (expended seed counts dependent on train/test/both configuration)
- transform_seed: every noise transform receives one supplemental seed for sampling from sampling_generator (expended seed counts are the same independant of train/test/both configuration)
- sampling_dict['seeding_type'] defaults to 'supplemental_seeds' or 'primary_seeds' as described below, where 'supplemental_seeds' means that entropy seeds are integrated into np.random.SeedSequence with entropy seeding from the operating system. Also accepts 'primary_seeds', in which user passed entropy seeds are the only source of seeding. Please note that 'primary_seeds' is used as the default for the bulk_seeds sampling_type and 'supplemental_seeds' is used as the default for other sampling_type options.
- sampling_dict['sampling_report_dict'] defaults as False, accepts a prior populated postprocess_dict['sampling_report_dict'] from an automunge(.), call if this is not received it will be generated internally. sampling_report_dict is a resource for determining how many entropy_seeds are needed for various sampling_type scnearios.
- sampling_dict['stochastic_count_safety_factor']: defaults to 0.15, accepts float 0-1, is associated with the bulk_seeds sampling_type case and is used as a multiplier for number of seeds populated for sampling operations with a stochastic number of entries
- sampling_dict['sampling_generator']: used to specify which generator will be used for sampling operations other than generation of additional entropy_seeds. defaults to 'custom' (meaning the passed random_generator or when unspecified the default PCG64), and accepts one of {'custom', 'PCG64', 'MersenneTwister'}
- sampling_dict['extra_seed_generator']: used to specify which generator will be used to sample additional entropy_seeds when more are needed to meet requirements of sampling_report_dict, defaults to 'custom' (meaning the passed random_generator or when unspecified the default PCG64), and accepts one of {'custom', 'PCG64', 'MersenneTwister', 'off', 'sampling_generator'}, where sampling_generator matches specification for sampling_generator, and 'off' turns off sampling of additional entropy seeds.
* randomseed: defaults as False, also accepts integers within 0:2\*\*31-1. When not specified, randomseed is based on a uniform randomly sampled integer within that range using an entropy_seeds when available.
This value is used as the postmunge(.) seed of randomness for operations that don't require matched random seeding to automunge(.).
* encrypt_key: when the postprocess_dict was encrypted by way of the corresponding automunge(.) encrypt_key parameter, a key is either derived and returned in the closing automunge(.) printouts, or a key is based on user specification. To prepare additional data in postmunge(.) with the encrypted postprocess_dict requires passing that key to the postmunge(.) encrypt_key parameter. Defaults to False for when encryption was not performed, other accepts a bytes type object with expected length of 16, 24, or 32. Please note that the AES encryption is applied with the [pycrypto](https://github.com/pycrypto/pycrypto) python library which requires installation in order to run (we found there were installations available via conda install).
* logger: user can initialize a dictionary externally (e.g. logger={}) and then pass it to this parameter (e.g. logger=logger). postmunge(.) will then log every printout scenario and validation result as they are being accessed in this external dictionary, which can then either be inspected for troubleshooting in cases of a halt scenario or archived. The report scenarios are loosely aligned with python logging module and also related to the tiers of printstatus.
```
logger = {}
test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict,
df_test,
logger=logger,
printstatus='silent')
#and then, e.g.
print(logger['debug_report'])
print(logger['info_report'])
print(logger['warning_report'])
#or validation results available in logger['validations']
```
## Default Transformations
When root categories of transformations are not assigned for a given column in
assigncat, automunge performs an evaluation of data properties to infer
appropriate means of feature engineering and numerical encoding. The default
categories of transformations are as follows:
- nmbr: for numeric data, columns are treated with z-score normalization. If
binstransform parameter was activated this will be supplemented by a collection
of bins indicating number of standard deviations from the mean. Note that default infill
performed prior to ML infill is imputation with negative zero. The exception is for
numeric data received in a column with pandas 'categoric' data type, which are instead binarized
consistent to categoric sets (as 1010 or bnry). Note that numerical sets with 2 unique values in train
set default to bnry. Note that features with majority str(int/float) entries are also treated as numeric.
- 1010: for categorical data excluding special cases described following, columns are
subject to binarization encoding via '1010' (e.g. for majority str or bytes type entries). If the
number of unique entries in the column exceeds the parameter 'numbercategoryheuristic'
(which defaults to 255), the encoding will instead be by hashing. Note that for default
infill missing data has a distinct representation in the encoding space. Note that features with
majority str(int/float) entries are treated as numeric.
- bnry: for categorical data of <=2 unique values excluding infill (e.g. NaN), the
column is encoded to 0/1. Note that numerical sets with 2 unique values in train
set also default to bnry.
- hsh2: for categorical data, if the number of unique entries in the column exceeds
the parameter 'numbercategoryheuristic' (which defaults to 255), the encoding will
instead be by 'hsh2' which is an ordinal (integer) encoding based on hashing.
hsh2 is excluded from ML infill.
- hash: for all unique entry categoric sets (based on sets with >75% unique entries),
the encoding will be by hash which extracts distinct words within entries returned in
a set of columns with an integer hashing. hash is excluded from ML infill. Note that for edge
cases with large string entries resulting in too high dimensionality, the max_column_count
parameter can be passed to default_assignparam in assignparam to put a cap on returned column count.
- dat6: for time-series data, a set of derivations are performed returning
'year', 'mdsn', 'mdcs', 'hmss', 'hmsc', 'bshr', 'wkdy', 'hldy' (these are defined
in next section)
- null: for columns without any valid values in training set (e.g. all NaN) column is deleted
For label sets, we use a distinct set of root categories under automation. These are in
some cases comparable to those listed above for training data, but differ in that the label
sets will not include a returned 'NArw' (infill marker) even when parameter NArw_marker
passed as True.
- lbnb: for numerical data, a label set is treated with an 'nmbr' z-score normalization.
- lbor: for categoric data of >2 unique values, a label set is treated with an ordinal encoding similar to 'ord3' ordinal encoding (frequency sorted order of encodings). lbor differs from ord3 in that missing data does not receive a distinct encoding and is instead grouped into the 0 activation (consistent with the ord3 parameter setting null_activation=False).
- lbbn: for categoric data of <3 unique values, a label set is treated with an 'bnry' binary encoding (single column binary), also applied to numeric sets with 2 unique values
Other label categories are available for assignment in assigncat, described below in the
library of transforms section for label set encodings.
Note that if a user wishes to avoid the automated assignment of default transformations,
such as to leave those columns not specifically assigned to transformation categories in
assigncat as unchanged, the powertransform parameter may be passed as values 'excl' or
'exc2', where for 'excl' columns not explicitly assigned to a root category in assigncat
will be left untouched, or for 'exc2' columns not explicitly assigned to a root category
in assigncat will be forced to numeric and subject to default modeinfill. (These two excl
arguments may be useful if a user wants to experiment with specific transforms on a
subset of the columns without incurring processing time of an entire set.) This option may
interfere with ML infill if data is not all numerically encoded.
If the data is already numerically encoded with NaN entries for missing data, ML infill
can be applied without further preprocessing transformations by passing powertransform = 'infill'.
Note that for columns designated for label sets as a special case categorical data will
default to 'ordl' (ordinal encoding) instead of '1010'. Also, numerical data will default
to 'excl2' (pass-through) instead of 'nmbr'.
- powertransform: if the powertransform parameter is activated, a statistical evaluation
will be performed on numerical sets to distinguish between columns to be subject to
bxcx, nmbr, or mnmx. Please note that we intend to further refine the specifics of this
process in future implementations. Additionally, powertransform may be passed as values 'excl'
or 'exc2', where for 'excl' columns not explicitly assigned to a root category in assigncat
will be left untouched, or for 'exc2' columns not explicitly assigned to a root category in
assigncat will be forced to numeric and subject to default modeinfill. (These two excl
arguments may be useful if a user wants to experiment with specific transforms on a subset of
the columns without incurring processing time of an entire set for instance.) To default to
noise injection to numeric and (non-hashed) categoric, can apply 'DP1' or 'DP2', (or 'DT1','DT2', 'DB1', 'DB2').
- floatprecision: parameter indicates the precision of floats in returned sets (16/32/64)
such as for memory considerations.
In all cases, if the parameter NArw_marker is activated returned sets will be
supplemented with a NArw column indicating rows that were subject to infill. Each
transformation category has a default infill approach detailed below.
Note that default transformations can be overwritten within an automunge(.) call by way
of passing custom transformdict family tree definitions which overwrite the family tree
of the default root categories listed above. For instance, if a user wishes to process
numerical columns with a default mean scaling ('mean') instead of z-score
normalization ('nmbr'), the user may copy the transform_dict entries from the code-base
for 'mean' root category and assign as a definition of the 'nmbr' root category, and then
pass that defined transformdict in the automunge call. (Note that we don't need to
overwrite the processdict for nmbr if we don't intend to overwrite its use as an entry
in other root category family trees. Also it is good practice to retain any downstream
entries such as in case the default for nmbr is used as an entry in some other root
category's family tree.) Here's a demonstration.
```
#create a transformdict that overwrites the root category definition of nmbr with mean:
#(assumes that we want to include NArw indicating presence of infill)
transformdict = {'nmbr' : {'parents' : [],
'siblings': [],
'auntsuncles' : ['mean'],
'cousins' : ['NArw'],
'children' : [],
'niecesnephews' : [],
'coworkers' : [],
'friends' : []}}
#And then we can simply pass this transformdict to an automunge(.) call.
train, train_ID, labels, \
val, val_ID, val_labels, \
test, test_ID, test_labels, \
postprocess_dict = \
am.automunge(df_train,
transformdict = transformdict)
```
Note if any of default transformation automation categories (nmbr/1010/ord3/text/bnry/dat6/null)
are overwritten in this fashion, a user can still assign original default categories to distinct
columns in assigncat by using corresponding alternates of (nmbd/101d/ordd/texd/bnrd/datd/nuld).
...
## Library of Transformations
### Library of Transformations Subheadings:
* [Intro](https://github.com/Automunge/AutoMunge/blob/master/README.md#intro)
* [Label Set Encodings](https://github.com/Automunge/AutoMunge/blob/master/README.md#label-set-encodings)
* [Numeric Set Normalizations](https://github.com/Automunge/AutoMunge/blob/master/README.md#numeric-set-normalizations)
* [Numeric Set Transformations](https://github.com/Automunge/AutoMunge/blob/master/README.md#numeric-set-transformations)
* [Numeric Set Bins and Grainings](https://github.com/Automunge/AutoMunge/blob/master/README.md#numeric-set-bins-and-grainings)
* [Sequential Numerical Set Transformations](https://github.com/Automunge/AutoMunge/blob/master/README.md#sequential-numerical-set-transformations)
* [Categorical Set Encodings](https://github.com/Automunge/AutoMunge/blob/master/README.md#categorical-set-encodings)
* [Date-Time Data Normalizations](https://github.com/Automunge/AutoMunge/blob/master/README.md#date-time-data-normalizations)
* [Date-Time Data Bins](https://github.com/Automunge/AutoMunge/blob/master/README.md#date-time-data-bins)
* [Differential Privacy Noise Injections](https://github.com/Automunge/AutoMunge/blob/master/README.md#differential-privacy-noise-injections)
* [Misc. Functions](https://github.com/Automunge/AutoMunge/blob/master/README.md#misc-functions)
* [Parsed Categoric Encodings](https://github.com/Automunge/AutoMunge/blob/master/README.md#Parsed-Categoric-Encodings)
* [More Efficient Parsed Categoric Encodings](https://github.com/Automunge/AutoMunge/blob/master/README.md#more-efficient-Parsed-Categoric-Encodings)
* [Multi-tier Parsed-Categoric-Encodings](https://github.com/Automunge/AutoMunge/blob/master/README.md#multi-tier-Parsed-Categoric-Encodings)
* [List of Root Categories](https://github.com/Automunge/AutoMunge/blob/master/README.md#list-of-root-categories)
* [List of Suffix Appenders](https://github.com/Automunge/AutoMunge/blob/master/README.md#list-of-suffix-appenders)
* [Other Reserved Strings](https://github.com/Automunge/AutoMunge/blob/master/README.md#other-reserved-strings)
* [Root Category Family Tree Definitions](https://github.com/Automunge/AutoMunge/blob/master/README.md#root-category-family-tree-definitions)
___
### Intro
Automunge has a built in library of transformations that can be passed for
specific columns with assigncat. (A column if left unassigned will defer to
the automated default methods to evaluate properties of the data to infer
appropriate methods of numerical encoding.) For example, a user can pass a
min-max scaling method to a list of specific columns with headers 'column1',
'column2' with:
```
assigncat = {'mnmx':['column1', 'column2']}
```
When a user assigns a column to a specific category, that category is treated
as the root category for the tree of transformations. Each key has an
associated transformation function (where the root category transformation function
is only applied if the root key is also found in the tree of family primitives).
The tree of family primitives, as introduced earlier, applies first the keys found
in upstream primitives i.e. parents/siblings/auntsuncles/cousins. If a transform
is applied for a primitive that includes downstream offspring, such as parents/
siblings, then the family tree for that key with offspring is inspected to determine
downstream offspring categories, for example if we have a parents key of 'mnmx',
then any children/niecesnephews/coworkers/friends in the 'mnmx' family tree will
be applied as parents/siblings/auntsuncles/cousins, respectively. Note that the
designation for supplements/replaces refers purely to the question of whether the
column to which the transform is being applied is kept in place or removed.
Now we'll start here by listing again the family tree primitives for those root
categories built into the automunge library. After that we'll give a quick
narrative for each of the associated transformation functions. First here again
are the family tree primitives.
```
'parents' :
upstream / first generation / replaces column / with offspring
'siblings':
upstream / first generation / supplements column / with offspring
'auntsuncles' :
upstream / first generation / replaces column / no offspring
'cousins' :
upstream / first generation / supplements column / no offspring
'children' :
downstream parents / offspring generations / replaces column / with offspring
'niecesnephews' :
downstream siblings / offspring generations / supplements column / with offspring
'coworkers' :
downstream auntsuncles / offspring generations / replaces column / no offspring
'friends' :
downstream cousins / offspring generations / supplements column / no offspring
```
Here is a quick description of the transformation functions associated
with each key which can either be assigned to a family tree primitive (or used
as a root key). We're continuing to build out this library of transformations.
In some cases different transformation categories may be associated with the
same set of transformation functions, but may be distinguished by different
family tree aggregations of transformation category sets.
Note the design philosophy is that any transform can be applied to any type
of data and if the data is not suited (such as applying a numeric transform
to a categorical set) the transform will just return all zeros. Note the
default infill refers to the infill applied under 'standardinfill'. Note the
default NArowtype refers to the categories of data that won't be subject to
infill.
### Label Set Encodings
Label set encodings are unique in that they don't include an aggregated NArw missing data markers
based on NArw_marker parameter. Missing data in label sets are subject to row deletions. Note that inversion of
label set encodings is support by the postmunge(.) inversion parameter.
* lbnm: for numeric label sets, entries are given a pass-through transform via 'exc2' (the numeric default under automation)
* lbnb: for numeric label sets, entries are given a z-score normalization via 'nmbr'
* lbor: for categoric label sets, entries are given an ordinal encoding via 'ordl' (the categoric default under automation)
* lb10: for categoric label sets, entries are given a binary encoding via '1010'
* lbos: for categoric label sets, entries are given an ordinal encoding via 'ordl' followed by a conversion to
string by 'strg' (some ML libraries prefer string encoded labels to recognize the classification application)
* lbte: for categoric label sets, entries are given a one-hot encoding (this has some interpretability benefits over ordinal)
* lbbn: for categoric label sets with 2 unique values, entries are given a binarization via 'bnry'
* lbsm: for categoric encoding with smoothed labels (i.e. "label smoothing"), further described in smth transform below (accepts activation parameter for activation threshold)
* lbfs: for categoric encoding with fitted smoothed labels (i.e. fitted label smoothing), further described in fsmh transform below (accepts activation parameter for activation threshold)
* lbda: for date-time label sets, entries are encoded comparable to 'dat6' described further below
### Numeric Set Normalizations
Please note that a survey of numeric transforms was provided in the paper [Numeric Encoding Options with Automunge](https://medium.com/automunge/a-numbers-game-b68ac261c40d).
* nmbr/nbr2/nbr3/nmdx/nmd2/nmd3: z-score normalization<br/>
(x - mean) / (standard deviation)
- useful for: normalizing numeric sets of unknown distribution
- default infill: negzeroinfill
- default NArowtype: numeric
- suffix appender: '\_nmbr' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'cap' and 'floor', default to False for no floor or cap,
True means floor/cap based on training set min/max, otherwise passed values serve as floor/cap to scaling,
noting that if cap<max then max reset to cap and if floor>min then min reset to floor
cap and floor based on pre-transform values
- 'stdev_cap', defaults to False, when cap and floor aren't specified, can pass an integer or float
to serve a cap/floor based on this number of standard deviations from the mean
- 'multiplier' and 'offset' to apply multiplier and offset to post-transform values, default to 1,0,
note that multiplier is applied prior to offset
- 'abs_zero', defaults to True, deactivate to turn off conversion of negative zeros to positive zeros applied prior to infill (this is included to supplement negzeroinfill)
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: mean / std / max / min / median / MAD
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* nbr4: z-score normalization similar to nmbr but with defaultinfill of zeroinfill instead of negzeroinfill and with abs_zero parameter deactivated<br/>
* mean/mea2/mea3: mean normalization (like z-score in the numerator and min-max in the denominator)<br/>
(x - mean) / (max - min)
My intuition says z-score has some benefits but really up to the user which they prefer.
- useful for: similar to z-score except data remains in fixed range
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_mean' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'cap' and 'floor', default to False for no floor or cap,
True means floor/cap based on training set min/max, otherwise passed values serve as floor/cap to scaling,
noting that if cap<max then max reset to cap and if floor>min then min reset to floor
cap and floor based on pre-transform values
- 'stdev_cap', defaults to False, when cap and floor aren't specified, can pass an integer or float
to serve a cap/floor based on this number of standard deviations from the mean
- 'multiplier' and 'offset' to apply multiplier and offset to post-transform values, default to 1,0,
note that multiplier is applied prior to offset
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: minimum / maximum / mean / std / median / MAD
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* mnmx/mnm2/mnm5/mmdx/mmd2/mmd3: vanilla min-max scaling<br/>
(x - min) / (max - min)
- useful for: normalizing numeric sets where all non-negative output is preferred
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_mnmx' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'cap' and 'floor', default to False for no floor or cap,
True means floor/cap based on training set min/max, otherwise passed values serve as floor/cap to scaling,
noting that if cap<max then max reset to cap and if floor>min then min reset to floor
cap and floor based on pre-transform values
- 'stdev_cap', defaults to False, when cap and floor aren't specified, can pass an integer or float
to serve a cap/floor based on this number of standard deviations from the mean
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: minimum / maximum / maxminusmin / mean / std / cap / floor / median / MAD
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* mnm3/mnm4: min-max scaling with outliers capped at 0.01 and 0.99 quantiles
- useful for: normalizing numeric sets where all non-negative output is preferred, and outliers capped
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_mnm3' in base configuration or based on the family tree category
- assignparam parameters accepted:
- qmax or qmin to change the quantiles from 0.99/0.01
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: quantilemin / quantilemax / mean / std / median / MAD
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
* mnm6: min-max scaling with test floor set capped at min of train set (ensures
test set returned values >= 0, such as might be useful for kernel PCA for instance)
- useful for: normalizing numeric sets where all non-negative output is preferred, guarantees nonnegative in postmunge
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_mnm6' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: minimum / maximum / mean / std / median / MAD
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
* retn: related to min/max scaling but retains +/- of values, based on conditions
if max>=0 and min<=0, x=x/(max-min), elif max>=0 and min>=0 x=(x-min)/(max-min),
elif max<=0 and min<=0 x=(x-max)/(max-min)
- useful for: normalization with sign retention for interpretability
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_retn' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'cap' and 'floor', default to False for no floor or cap,
True means floor/cap based on training set min/max, otherwise passed values serve as floor/cap to scaling,
noting that if cap<max then max reset to cap and if floor>min then min reset to floor
cap and floor based on pre-transform values
- 'stdev_cap', defaults to False, when cap and floor aren't specified, can pass an integer or float
to serve a cap/floor based on this number of standard deviations from the mean
- 'multiplier' and 'offset' to apply multiplier and offset to post-transform values, default to 1,0,
note that multiplier is applied prior to offset
- 'divisor' to select between default of 'minmax' or 'mad, 'std', where minmax means scaling by divisor of max-min
std based on scaling by divisor of standard deviation and mad by median absolute deviation
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: minimum / maximum / mean / std / median / MAD
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* rtbn: retain normalization supplemented by ordinal encoded standard deviation bins
* rtb2: retain normalization supplemented by one-hot encoded standard deviation bins
* MADn/MAD2: mean absolute deviation normalization, subtract set mean <br/>
(x - mean) / (mean absolute deviation)
- useful for: normalizing sets with fat-tailed distribution
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_MADn' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: mean / MAD / maximum / minimum / median
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* MAD3: mean absolute deviation normalization, subtract set maximum<br/>
(x - maximum) / (mean absolute deviation)
- useful for: normalizing sets with fat-tailed distribution
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_MAD3' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: mean / MAD / datamax / maximum / minimum / median
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* mxab: max absolute scaling normalization (just including this one for completeness, retn is a much better option to ensure consistent scaling between sets)<br/>
(x) / max absolute
- useful for: normalizing sets by dividing by max, commonly used in some circles
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_mxab' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: minimum / maximum / maxabs / mean / std
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* lgnm: normalization intended for lognormal distributed numerical sets,
achieved by performing a logn transform upstream of a nmbr normalization.
- useful for: normalizing sets within proximity of lognormal distribution
- default infill: mean
- default NArowtype: positivenumeric
- suffix appender: '_lgnm_nmbr'
- assignparam parameters accepted: can pass params to nmbr consistent with nmbr documentation above
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: consistent with both logn and nmbr
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
### Numeric Set Transformations
* bxcx/bxc2/bxc3/bxc4/bxc5: performs Box-Cox power law transformation. Applies infill to
values <= 0. Note we currently have a test for overflow in returned results and if found
set to 0. Please note that this method makes use of scipy.stats.boxcox. Please refer to
family trees below for full set of transformation categories associated with these roots.
- useful for: translates power law distributions to closer approximate gaussian
- default infill: mean (i.e. mean of values > 0)
- default NArowtype: positivenumeric
- suffix appender: '_bxcx' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: trnsfrm_mean / bxcx_lmbda / bxcxerrorcorrect / mean
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: no
* qttf/qtt2: performs quantile transformation to transform distribution properties of feature set.
Please note this method makes use of sklearn.preprocessing.QuantileTransformer from Scikit-Learn.
qttf converts to a normal output distribution, qtt2 converts to a uniform output distribution. When received data is all non-numeric returns as 0.
- useful for: translates distributions to closer approximate gaussian (may be applied as alternative to bxcx)
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_qttf' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'output_distribution': defualts to 'normal' for qttf, or 'uniform' for qtt2
- 'random_state': based on automunge(.) randomseed
- other parameters and their type requirements consistent with scikit documentation (n_quantiles, ignore_implicit_zeros, subsample)
- note that copy parameter not supported, fit parameters not supported
- driftreport postmunge metrics: input_max / input_min / input_stdev / input_mean
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
* log0/log1: performs logarithmic transform (base 10). Applies infill to values <= 0.
- useful for: sets with mixed range of large and small values
- default infill: meanlog
- default NArowtype: positivenumeric
- suffix appender: '_log0' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: meanlog
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* logn: performs natural logarithmic transform (base e). Applies infill to values <= 0.
- useful for: sets with mixed range of large and small values
- default infill: meanlog
- default NArowtype: positivenumeric
- suffix appender: '_logn' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: meanlog
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* sqrt: performs square root transform. Applies infill to values < 0.
- useful for: common mathematic transform
- default infill: mean
- default NArowtype: nonnegativenumeric
- suffix appender: '_sqrt' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: meansqrt
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* addd: performs addition of an integer or float to a set
- useful for: common mathematic transform
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_addd' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'add' for value added (default to 1)
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: mean, add
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* sbtr: performs subtraction of an integer or float to a set
- useful for: common mathematic transform
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_sbtr' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'subtract' for value subtracted (default to 1)
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: mean, subtract
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* mltp: performs multiplication of an integer or float to a set
- useful for: common mathematic transform
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_mltp' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'multiply' for value multiplied (default to 2)
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: mean, multiply
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* divd: performs division of an integer or float to a set
- useful for: common mathematic transform
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_divd' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'divide' for value subtracted (default to 2)
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: mean, divide
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* rais: performs raising to a power of an integer or float to a set
- useful for: common mathematic transform
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_rais' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'raiser' for value raised (default to 2)
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: mean, raiser
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* absl: performs absolute value transform to a set
- useful for: common mathematic transform
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_absl' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: mean
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with partial recovery
* trigometric functions sint/cost/tant/arsn/arcs/artn: performs trigometric transformations.
Transforms are built on top of numpy np.sin/np.cos/np.tan/np.arcsin/np.arccos/np.arctan respectively.
- useful for: common mathematic transform
- default infill: adjinfill
- default NArowtype: numeric
- suffix appender: based on the family tree category
- assignparam parameters accepted:
- 'operation': defaults to operation associated with the function, accepts {'sin', 'cos', 'tan', 'arsn', 'arcs', 'artn'}
- driftreport postmunge metrics: maximum, minimum
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with partial recovery
Q Notation family of transforms return a multicolumn binary encoded set with registers for sign, integers, and fractionals.
Transforms accept parameters integer_bits / fractional_bits / sign_bit for register sizes, care should be taken for
adequate registers to avoid overflow (overflow entries have values replaced with max or min capacity based on register sizes).
Default register sizes were selected to accommodate z-score normalized data with +/-6
standard deviations from mean and approximately 4 significant figures in decimals. For example, with default parameters an input column 'floats' will return columns: ['floats_qbt1_sign', 'floats_qbt1_2^2', 'floats_qbt1_2^1', 'floats_qbt1_2^0', 'floats_qbt1_2^-1', 'floats_qbt1_2^-2', 'floats_qbt1_2^-3', 'floats_qbt1_2^-4', 'floats_qbt1_2^-5', 'floats_qbt1_2^-6', 'floats_qbt1_2^-7', 'floats_qbt1_2^-8', 'floats_qbt1_2^-9', 'floats_qbt1_2^-10', 'floats_qbt1_2^-11', 'floats_qbt1_2^-12'].
Further details on the Q notation family of transforms provided in the essay [A New Kind of Data](https://medium.com/automunge/a-new-kind-of-data-1f1bcf90822d).
* qbt1: binary encoded signed floats with registers for sign, integers, and fractionals, default overflow at +/- 8.000
- useful for: feeding normalized floats to quantum circuits
- default infill: negative zero
- default NArowtype: numeric
- suffix appender: '_qbt1_2^#' where # integer associated with register and also '_qbt1_sign'
- assignparam parameters accepted:
- suffix: defaults to 'qbt1'
- sign_bit: boolean defaults to True to include sign register
- integer_bits: defaults to 3 for number of bits in register
- fractional_bits: defaults to 12 for number of bits in register
- angle_bits: boolean, defaults to False, when activated records activations as angles 0/pi instead of 0/1
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: maximum, minimum, mean, stdev
- returned datatype: int8
- inversion available: yes with full recovery
* qbt2: binary encoded signed integers with registers for sign and integers, default overflow at +/-32,767
- useful for: feeding floats to quantum circuits
- default infill: zero
- default NArowtype: negative zero
- suffix appender: '_qbt2_2^#' where # integer associated with register and also '_qbt2_sign'
- assignparam parameters accepted:
- suffix: defaults to 'qbt2'
- sign_bit: boolean defaults to True to include sign register
- integer_bits: defaults to 15 for number of bits in register
- fractional_bits: defaults to 0 for number of bits in register
- angle_bits: boolean, defaults to False, when activated records activations as angles 0/pi instead of 0/1
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: maximum, minimum, mean, stdev
- returned datatype: int8
- inversion available: yes with full recovery
* qbt3: binary encoded unsigned floats with registers for integers and fractionals, default overflow at 8.000 and <0
- useful for: feeding unsigned normalized floats to quantum circuits
- default infill: zero
- default NArowtype: numeric
- suffix appender: '_qbt3_2^#' where # integer associated with register
- assignparam parameters accepted:
- suffix: defaults to 'qbt3'
- sign_bit: boolean defaults to False, activate to include sign register
- integer_bits: defaults to 3 for number of bits in register
- fractional_bits: defaults to 13 for number of bits in register
- angle_bits: boolean, defaults to False, when activated records activations as angles 0/pi instead of 0/1
- driftreport postmunge metrics: maximum, minimum, mean, stdev
- returned datatype: int8
- inversion available: yes with full recovery
* qbt4: binary encoded unsigned integers with registers for integers, default overflow at 65,535 and <0
- useful for: feeding unsigned floats to quantum circuits
- default infill: zero
- default NArowtype: numeric
- suffix appender: '_qbt4_2^#' where # integer associated with register
- assignparam parameters accepted:
- suffix: defaults to 'qbt4'
- sign_bit: boolean defaults to False, activate to include sign register
- integer_bits: defaults to 16 for number of bits in register
- fractional_bits: defaults to 0 for number of bits in register
- angle_bits: boolean, defaults to False, when activated records activations as angles 0/pi instead of 0/1
- driftreport postmunge metrics: maximum, minimum, mean, stdev
- returned datatype: int8
- inversion available: yes with full recovery
Other Q Notation root categories:
- nmqb has upstream z score to qbt1 and z score not retained
- nmq2 has upstream z score to qbt1 and z score is retained
- mmqb has upstream min max to qbt3 and min max not retained
- mmq2 has upstream min max to qbt3 and min max is retained
- lgnr logarithmic number representation, registers 1 for sign, 1 for log sign, 4 log integer registers, 3 log fractional registers
### Numeric Set Bins and Grainings
* pwrs: bins groupings by powers of 10 (for values >0)
- useful for: feature engineering for linear models, also for oversampling bins with TrainFreqLevelizer parameter
- default infill: no activation (defaultinfill not supported)
- default NArowtype: positivenumeric
- suffix appender: '\_pwrs_10^#' where # is integer indicating target powers of 10 for column
- assignparam parameters accepted:
- 'negvalues', boolean defaults to False, True bins values <0
(recommend using pwr2 instead of this parameter since won't update NArowtype)
- 'suffix': to change suffix appender (leading underscore added internally)
- 'zeroset': boolean defaults to False, when True the number zero receives a distinct activation instead of grouping with missing data (recommend also updating NArowtype, such as to nonnegativenumeric)
- 'cap': defaults to False for no cap, can pass as integer or float and > values replaced with this figure
- 'floor': defaults to False for no floor, can pass as integer or float and < values replaced with this figure
- driftreport postmunge metrics: powerlabelsdict / meanlog / maxlog / activation_ratios
- returned datatype: int8
- inversion available: yes with partial recovery
* pwr2: bins groupings by powers of 10 (comparable to pwrs with negvalues parameter activated for values >0 & <0)
- useful for: feature engineering for linear models, also for oversampling bins with TrainFreqLevelizer parameter
- default infill: no activation (defaultinfill not supported)
- default NArowtype: nonzeronumeric
- suffix appender: '\_pwr2_10^#' or '\_pwr2_-10^#' where # is integer indicating target powers of 10 for column
- assignparam parameters accepted:
- 'negvalues', boolean defaults to True, True bins values <0
(recommend using pwrs instead of this parameter since won't update NArowtype)
- 'zeroset': boolean defaults to False, when True the number zero receives a distinct activation instead of grouping with missing data (recommend also updating NArowtype, such as to numeric)
- 'suffix': to change suffix appender (leading underscore added internally)
- 'cap': defaults to False for no cap, can pass as integer or float and > values replaced with this figure
- 'floor': defaults to False for no floor, can pass as integer or float and < values replaced with this figure
- driftreport postmunge metrics: powerlabelsdict / labels_train / missing_cols / activation_ratios
- returned datatype: int8
- inversion available: yes with partial recovery
* pwor: for numerical sets, outputs an ordinal encoding indicating where a
value fell with respect to powers of 10
- useful for: ordinal version of pwrs
- default infill: zero (defaultinfill not supported)
- default NArowtype: positivenumeric
- suffix appender: '_pwor' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'negvalues', boolean defaults to False, True bins values <0 (recommend using por2 instead of this parameter since won't update NArowtype)
- 'zeroset': boolean defaults to False, when True the number zero receives a distinct activation instead of grouping with missing data (recommend also updating NArowtype, such as to nonnegativenumeric)
- 'suffix': to change suffix appender (leading underscore added internally)
- 'cap': defaults to False for no cap, can pass as integer or float and > values replaced with this figure
- 'floor': defaults to False for no floor, can pass as integer or float and < values replaced with this figure
- driftreport postmunge metrics: meanlog / maxlog / ordl_activations_dict
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with partial recovery
* por2: for numerical sets, outputs an ordinal encoding indicating where a
value fell with respect to powers of 10 (comparable to pwor with negvalues parameter activated)
- useful for: ordinal version of pwr2
- default infill: zero (a distinct encoding) (defaultinfill not supported)
- default NArowtype: nonzeronumeric
- suffix appender: '_por2' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'negvalues', boolean defaults to True, True bins values <0 (recommend using pwor instead of this parameter since won't update NArowtype)
- 'zeroset': boolean defaults to False, when True the number zero receives a distinct activation instead of grouping with missing data (recommend also updating NArowtype, such as to numeric)
- 'suffix': to change suffix appender (leading underscore added internally)
- 'cap': defaults to False for no cap, can pass as integer or float and > values replaced with this figure
- 'floor': defaults to False for no floor, can pass as integer or float and < values replaced with this figure
- driftreport postmunge metrics: train_replace_dict / test_replace_dict / ordl_activations_dict
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with partial recovery
* pwbn: comparable to pwor but followed by a binary encoding, such as may be useful for data with
high variability
- useful for: ordinal version of pwrs
- default infill: zero (a distinct encoding)
- default NArowtype: nonzeronumeric
- suffix appender: '_pwbn_1010_#' (where # is integer for binary encoding activation number)
- assignparam parameters accepted:
- accepts parameters comparable to pwor
- driftreport postmunge metrics: train_replace_dict / test_replace_dict / ordl_activations_dict
- returned datatype: int8
- inversion available: yes with partial recovery
* por3: comparable to por2 but followed by a binary encoding, such as may be useful for data with
high variability
- useful for: ordinal version of pwr2
- default infill: zero (a distinct encoding)
- default NArowtype: nonzeronumeric
- suffix appender: '_por3_1010_#' (where # is integer for binary encoding activation number)
- assignparam parameters accepted:
- accepts parameters comparable to pwor
- driftreport postmunge metrics: train_replace_dict / test_replace_dict / ordl_activations_dict
- returned datatype: int8
- inversion available: yes with partial recovery
* bins: for numerical sets, outputs a set of columns (defaults to 6) indicating where a
value fell with respect to number of standard deviations from the mean of the
set (i.e. integer suffix represent # from mean as <-2:0, -2-1:1, -10:2, 01:3, 12:4, >2:5)
Note this can be activated to supplement numeric sets with binstransform automunge parameter.
- useful for: feature engineering for linear models, also for oversampling bins with TrainFreqLevelizer parameter
- default infill: mean
- default NArowtype: numeric
- suffix appender: '\_bins\_#' where # is integer identifier of bin
- assignparam parameters accepted:
- bincount integer for number of bins, defaults to 6
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: binsmean / binsstd / activation_ratios
- returned datatype: int8
- inversion available: yes with partial recovery
* bsor: for numerical sets, outputs an ordinal encoding indicating where a
value fell with respect to number of standard deviations from the mean of the
set (i.e. integer encoding represent # from mean as <-2:0, -2-1:1, -10:2, 01:3, 12:4, >2:5)
- useful for: ordinal version of bins
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_bsor' in base configuration or based on the family tree category
- assignparam parameters accepted:
- bincount as integer for # of bins (defaults to 6)
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: ordinal_dict / ordl_activations_dict / binsmean / binsstd
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with partial recovery
* bnwd/bnwK/bnwM: for numerical set graining to fixed width bins for one-hot encoded bins
(columns without activations in train set excluded in train and test data).
bins default to width of 1/1000/1000000 e.g. for bnwd/bnwK/bnwM
- useful for: bins for sets with known recurring demarcations
- default infill: mean
- default NArowtype: numeric
- suffix appender: '\_bnwd\_#1\_#2' where #1 is the width and #2 is the bin identifier (# from min)
and 'bnwd' as bnwK or bnwM based on variant
- assignparam parameters accepted:
- 'width' to set bin width
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: binsmean / bn_min / bn_max / bn_delta / bn_count / bins_id /
bins_cuts / bn_width_bnwd (or bnwK/bnwM) / textcolumns / activation_ratios
- returned datatype: int8
- inversion available: yes with partial recovery
* bnwo/bnKo/bnMo: for numerical set graining to fixed width bins for ordinal encoded bins
(integers without train set activations still included in test set).
bins default to width of 1/1000/1000000 e.g. for bnwd/bnwK/bnwM
- useful for: ordinal version of preceding
- default infill: mean
- default NArowtype: numeric
- suffix appender: '_bnwo' (or '_bnKo', '_bnMo')
- assignparam parameters accepted:
- 'width' to set bin width
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: binsmean / bn_min / bn_max / bn_delta / bn_count / bins_id /
bins_cuts / bn_width / ordl_activations_dict
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with partial recovery
* bnep/bne7/bne9: for numerical set graining to equal population bins for one-hot encoded bins.
bin count defaults to 5/7/9 e.g. for bnep/bne7/bne9
- useful for: bins for sets with unknown demarcations
- default infill: no activation (defaultinfill not supported)
- default NArowtype: numeric
- suffix appender: '\_bnep\_#1' where #1 is the bin identifier (# from min) (or bne7/bne9 instead of bnep)
- assignparam parameters accepted:
- 'bincount' to set number of bins
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: binsmean / bn_min / bn_max / bn_delta / bn_count / bins_id /
bins_cuts / bincount_bnep (or bne7/bne9) / textcolumns /
activation_ratios
- returned datatype: int8
- inversion available: yes with partial recovery
* bneo/bn7o/bn9o: for numerical set graining to equal population bins for ordinal encoded bins.
bin count defaults to 5/7/9 e.g. for bneo/bn7o/bn9o
- useful for: ordinal version of preceding
- default infill: adjacent cell
- default NArowtype: numeric
- suffix appender: '\_bneo' (or bn7o/bn9o)
- assignparam parameters accepted:
- 'bincount' to set number of bins
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: binsmean / bn_min / bn_max / bn_delta / bn_count / bins_id /
bins_cuts / bincount / ordl_activations_dict
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with partial recovery
* bkt1: for numerical set graining to user specified encoded bins. First and last bins unconstrained.
- useful for: bins for sets with known irregular demarcations
- default infill: no activation (defaultinfill not supported)
- default NArowtype: numeric
- suffix appender: '\_bkt1\_#1' where #1 is the bin identifier (# from min)
- assignparam parameters accepted:
- 'buckets', a list of numbers, to set bucket boundaries (leave out +/-'inf')
defaults to [0,1,2] (arbitrary plug values), can also pass buckets values as percent of range by framing as a set instead of list e.g. {0,0.25,0.50,1}
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: binsmean / buckets_bkt1 / bins_cuts / bins_id / textcolumns /
activation_ratios
- returned datatype: int8
- inversion available: yes with partial recovery
* bkt2: for numerical set graining to user specified encoded bins. First and last bins bounded.
- useful for: bins for sets with known irregular demarcations, similar to preceding but first and last bins bounded
- default infill: no activation (defaultinfill not supported)
- default NArowtype: numeric
- suffix appender: '\_bkt2\_#1' where #1 is the bin identifier (# from min)
- assignparam parameters accepted:
- 'buckets', a list of numbers, to set bucket boundaries
defaults to [0,1,2] (arbitrary plug values), can also pass buckets values as percent of range by framing as a set instead of list e.g. {0,0.25,0.50,1}
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: binsmean / buckets_bkt2 / bins_cuts / bins_id / textcolumns /
activation_ratios
- returned datatype: int8
- inversion available: yes with partial recovery
* bkt3: for numerical set graining to user specified ordinal encoded bins. First and last bins unconstrained.
- useful for: ordinal version of bkt1
- default infill: unique activation
- default NArowtype: numeric
- suffix appender: '_bkt3' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'buckets', a list of numbers, to set bucket boundaries (leave out +/-'inf')
defaults to [0,1,2] (arbitrary plug values), can also pass buckets values as percent of range by framing as a set instead of list e.g. {0,0.25,0.50,1}
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: binsmean / buckets / bins_cuts / bins_id / ordl_activations_dict
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with partial recovery
* bkt4: for numerical set graining to user specified ordinal encoded bins. First and last bins bounded.
- useful for: ordinal version of bkt2
- default infill: unique activation
- default NArowtype: numeric
- suffix appender: '_bkt4' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'buckets', a list of numbers, to set bucket boundaries
defaults to [0,1,2] (arbitrary plug values), can also pass buckets values as percent of range by framing as a set instead of list e.g. {0,0.25,0.50,1}
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: binsmean / buckets / bins_cuts / bins_id / ordl_activations_dict
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with partial recovery
* note that bins each have variants for one-hot vs ordinal vs binary encodings
one-hot : bkt1, bkt2, bins, bnwd, bnwK, bnwM, bnep, bne7, bne9, pwrs, pwr2
ordinal : bkt3, bkt4, bsor, bnwo, bnKo, bnMo, bneo, bn7o, bn9o, pwor, por2
binary : bkb3, bkb4, bsbn, bnwb, bnKb, bnMb, bneb, bn7b, bn9b, pwbn, por3
* tlbn: returns equal population bins in separate columns with activations replaced by min-max scaled
values within that segment's range (between 0-1) and other values subject to an infill of -1
(intended for use to evaluate feature importance of different segments of a numerical set's distribution
with metric2 results from a feature importance evaluation). Further detail on the tlbn transform provided
in the essay [Automunge Influence](https://medium.com/automunge/automunge-influence-382d44786e43).
- useful for: evaluating relative feature importance between different segments of a numeric set distribution
- default infill: no activation (this is the recommended infill for this transform)
- default NArowtype: numeric
- suffix appender: '\_tlbn\_#' where # is the bin identifier, and max# is right tail / min# is left tail
- assignparam parameters accepted:
- 'bincount' to set number of bins (defaults to 9)
- 'buckets', defaults to False, can pass as a list of bucket boundaries for custom distribution segments
which will take precedence over bincount (leave out -/+inf which will be added for first and last bins internally)
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: binsmean / bn_min / bn_max / bn_delta / bn_count / bins_id /
bins_cuts / bincount_tlbn / textcolumns / activation_ratios
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
### Sequential Numerical Set Transformations
Please note that sequential transforms assume the forward progression of time towards direction of bottom of dataframe.
Please note that only stdrdinfill (adjinfill) are supported for shft transforms.
* dxdt/d2dt/d3dt/d4dt/d5dt/d6dt: rate of change (row value minus value in preceding row), high orders
return lower orders (e.g. d2dt returns original set, dxdt, and d2dt), all returned sets include 'retn'
normalization which scales data with min/max while retaining +/- sign
- useful for: time series data, also bounding sequential sets
- default infill: adjacent cells
- default NArowtype: numeric
- suffix appender: '_dxdt' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'periods' sets number of time steps offset to evaluate, defaults to 1
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: positiveratio / negativeratio / zeroratio / minimum / maximum / mean / std
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: no
* dxd2/d2d2/d3d2/d4d2/d5d2/d6d2: denoised rate of change (average of last two or more rows minus average
of preceding two or more rows), high orders return lower orders (e.g. d2d2 returns original set, dxd2,
and d2d2), all returned sets include 'retn' normalization
- useful for: time series data, also bounding sequential sets
- default infill: adjacent cells
- default NArowtype: numeric
- suffix appender: '_dxd2' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'periods' sets number of time steps offset to evaluate, defaults to 2
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: positiveratio / negativeratio / zeroratio / minimum / maximum / mean / std
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: no
* nmdx/nmd2/nmd3/nmd4/nmd5/nmd6: comparable to dxdt but includes upstream of sequential transforms a
nmrc numeric string parsing top extract numbers from string sets
* mmdx/mmd2/mmd3/mmd4/mmd5/mmd6: comparable to dxdt but uses z-score normalizations via 'nbr2' instead of 'retn'
* dddt/ddd2/ddd3/ddd4/ddd5/ddd6: comparable to dxdt but no normalizations applied
* dedt/ded2/ded3/ded4/ded5/ded6: comparable to dxd2 but no normalizations applied
- inversion available: no
* shft/shf2/shf3: shifted data forward by a period number of time steps defaulting to 1/2/3. Note that NArw aggregation
not supported for shift transforms, infill only available as adjacent cell
- useful for: time series data, carrying prior time steps forward
- default infill: adjacent cells (defaultinfill not supported)
- default NArowtype: numeric
- suffix appender: '_shft' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'periods' sets number of time steps offset to evaluate, defaults to 1/2/3
- 'suffix' sets the suffix appender of returned column
as may be useful to distinguish if applying this multiple times
- driftreport postmunge metrics: positiveratio / negativeratio / zeroratio / minimum / maximum / mean / std
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
### Categorical Set Encodings
* bnry: converts sets with two values to boolean identifiers. Defaults to assigning
1 to most common value and 0 to second most common, unless 1 or 0 is already included
in most common of the set then defaults to maintaining those designations. If applied
to set with >2 entries applies infill to those entries beyond two most common.
- useful for: binarizing sets with two unique values (differs from 1010 in that distinct encoding isn't registered for missing data to return single column)
- default infill: most common value
- default NArowtype: justNaN
- suffix appender: '_bnry' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'str_convert': boolean defaults as False for distinct encodings between numbers and string equivalents
e.g. 2 != '2', or when passed as True e.g. 2 == '2'. Also can be passed as 'conditional_on_bytes' which resets to True when bytes entries are present in train set otherwise resets to False.
- 'suffix': to change suffix appender (leading underscore added internally)
- 'invert': reverses the 0/1 convention (results in most common value having 0 activation which is default for lbbn label processing to resolve a remote edge case for labels)
- driftreport postmunge metrics: missing / 1 / 0 / extravalues / oneratio / zeroratio
- returned datatype: int8
- inversion available: yes with full recovery
* bnr2: (Same as bnry except for default infill.)
- useful for: similar to bnry preceding but with different default infill
- default infill: least common value
- default NArowtype: justNaN
- suffix appender: '_bnr2' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'str_convert': boolean defaults as False for distinct encodings between numbers and string equivalents
e.g. 2 != '2', or when passed as True e.g. 2 == '2'. Also can be passed as 'conditional_on_bytes' which resets to True when bytes entries are present in train set otherwise resets to False.
- 'suffix': to change suffix appender (leading underscore added internally)
- 'invert': reverses the 0/1 convention (results in most common value having 0 activation which is default for lbbn label processing to resolve a remote edge case for labels)
- driftreport postmunge metrics: missing / 1 / 0 / extravalues / oneratio / zeroratio
- returned datatype: int8
- inversion available: yes with full recovery
* text/txt2: converts categorical sets to one-hot encoded set of boolean identifiers
(consistently encodings numbers and numerical string equivalents due to column labeling convention, e.g. 12 == '12').
Note that text and onht are implemented with the same functions by updates to the suffix_convention parameter.
- useful for: one hot encoding, returns distinct column activation per unique entry
- default infill: no activation in row
- default NArowtype: justNaN
- suffix appender:
- '_text\_(entry)' where entry is the categoric entry target of column activations (one of the unique values found in received column)
- assignparam parameters accepted:
- 'suffix_convention', accepts one of {'text', 'onht'} for suffix convention, defaults to 'text'. Note that 'str_convert' and 'null_activation' parameters only accepted in 'onht' configuration.
- 'str_convert', applied as True in text suffix_convention for common encodings between numbers and string equivalents e.g. 2 == '2'. (text does not support other str_convert scenarios due to column header conventions)
- 'null_activation': applied as False in text suffix_convention for no activations for missing data
- 'all_activations': defaults to False, can pass as a list of all entries that will be targets for activations (which may have fewer or more entries than the set of unique values found in the train set, including entries not found in the train set)
- 'add_activations': defaults to False, user can pass as a list of entries that will be added as targets for activations (resulting in extra returned columns if those entries aren't present in the train set)
- 'less_activations': defaults to False, user can pass as a list of entries that won't be treated as targets for activation (these entries will instead receive no activation)
- 'consolidated_activations': defaults to False, user can pass a list of entries (or a list of lists of entries) that will have their activations consolidated to a single common activation
- 'ordered_overide': default to True, accepts boolean indicating if columns received as pandas ordered categoric will use that basis for order of the returned columns. Note this is deactivated when activation parameters are specified (all/add/less/consolidated).
- 'frequency_sort': boolean defaults to True, when activated the order of returned columns is sorted by frequency of entries as found in the train set, when deactivated sorting is alphabetic
* onht: converts categorical sets to one-hot encoded set of boolean identifiers
(like text but different convention for returned column headers and distinct encodings for numbers and numerical string equivalents). Note that text and onht are implemented with the same functions by updates to the suffix_convention parameter. To apply onht to a "messy" feature with multiple columns in input headers can apply assigncat set bracket specification to root category 'cns2'.
- useful for: similar to text transform preceding but with numbered column header convention
- default infill: no activation in row
- default NArowtype: justNaN
- suffix appender: '_onht\_#' where # integer corresponds to the target entry of a column
- assignparam parameters accepted:
- 'suffix_convention', accepts one of {'text', 'onht'} for suffix convention, defaults to 'text' (onht process_dict specification overwrites this to 'onht'). Note that 'str_convert' and 'null_activation' parameters only accepted in 'onht' configuration.
- 'str_convert', boolean defaults as True for common encodings between numbers and string equivalents
e.g. 2 != '2', when passed as True e.g. 2 == '2' (the False scenario does not support bytes type entries). Also can be passed as 'conditional_on_bytes' which resets to True when bytes entries are present in train set otherwise resets to False.
- 'null_activation': defaults to False, when True missing data is returned with distinct activation in final column in set. (Also accepts as 'Binary' which is for internal use.)
- 'all_activations': defaults to False, can pass as a list of all entries that will be targets for activations (which may have fewer or more entries than the set of unique values found in the train set, including entries not found in the train set)
- 'add_activations': defaults to False, user can pass as a list of entries that will be added as targets for activations (resulting in extra returned columns if those entries aren't present in the train set)
- 'less_activations': defaults to False, user can pass as a list of entries that won't be treated as targets for activation (these entries will instead receive no activation)
- 'consolidated_activations': defaults to False, user can pass a list of entries (or a list of lists of entries) that will have their activations consolidated to a single common activation
- 'ordered_overide': default to True, accepts boolean indicating if columns received as pandas ordered categoric will use that basis for order of the returned columns. Note this is deactivated when activation parameters are specified (all/add/less/consolidated).
- 'frequency_sort': boolean defaults to True, when activated the order of returned columns is sorted by frequency of entries as found in the train set, when deactivated sorting is alphabetic
- driftreport postmunge metrics: textlabelsdict_text / <column> + '_ratio' (column specific)
text_categorylist is key between columns and target entries
- returned datatype: int8
- inversion available: yes with full recovery
* ordl/ord2/ord5: converts categoric sets to ordinal integer encoded set, encodings sorted alphabetically
- useful for: categoric sets with high cardinality where one-hot or binarization may result in high dimensionality. Also default for categoric labels.
- default infill: naninfill, with returned distinct activation of integer 0
- default NArowtype: justNaN
- suffix appender: '_ordl' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'str_convert', boolean defaults as True for common encodings between numbers and string equivalents
e.g. 2 == '2'. Also can be passed as 'conditional_on_bytes' which resets to True when bytes entries are present in train set otherwise resets to False.
- 'null_activation': defaults to True for a distinct missing data encoding, when False missing data is grouped with another entry in the 0 integer encoding. (Also accepts as 'Binary' which is for internal use.)
- 'all_activations': defaults to False, can pass as a list of all entries that will be targets for activations (which may have fewer or more entries than the set of unique values found in the train set, including entries not found in the train set)
- 'add_activations': defaults to False, user can pass as a list of entries that will be added as targets for activations (resulting in extra returned columns if those entries aren't present in the train set)
- 'less_activations': defaults to False, user can pass as a list of entries that won't be treated as targets for activation (these entries will instead receive no activation)
- 'consolidated_activations': defaults to False, user can pass a list of entries (or a list of lists of entries) that will have their activations consolidated to a single common activation
- 'ordered_overide': default to True, accepts boolean indicating if columns received as pandas ordered categoric will use that basis for order of the returned columns. Note this is deactivated when activation parameters are specified (all/add/less/consolidated).
- 'frequency_sort': boolean defaults to True but set as False for ordl, when activated the order of integer activations is sorted by frequency of entries as found in the train set, when deactivated sorting is alphabetic. The 0 activation is reserved for missing data.
- driftreport postmunge metrics: ordinal_dict / ordinal_overlap_replace / ordinal_activations_dict
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with full recovery
* ord3: converts categoric sets to ordinal integer encoded set, sorted first by frequency of category
occurrence, second basis for common count entries is alphabetical. To apply ord3 to a "messy" feature with multiple columns in input headers can apply assigncat set bracket specification to root category 'cns3'.
- useful for: similar to ordl preceding but activations are sorted by entry frequency instead of alphabetical
- default infill: unique activation
- default NArowtype: justNaN
- suffix appender: '_ord3' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'ordered_overide', boolean defaults True, when True inspects for Pandas ordered categorical and
if found integer encoding order defers to that basis
- 'str_convert', boolean defaults as True for common encodings between numbers and string equivalents
e.g. 2 == '2' (the False scenario does not support bytes type entries). Also can be passed as 'conditional_on_bytes' which resets to True when bytes entries are present in train set otherwise resets to False.
- 'null_activation': defaults to True for a distinct missing data encoding, when False missing data is grouped with another entry in the 0 integer encoding. (Also accepts as 'Binary' which is for internal use.)
- 'all_activations': defaults to False, can pass as a list of all entries that will be targets for activations (which may have fewer or more entries than the set of unique values found in the train set, including entries not found in the train set)
- 'add_activations': defaults to False, user can pass as a list of entries that will be added as targets for activations (resulting in extra returned columns if those entries aren't present in the train set)
- 'less_activations': defaults to False, user can pass as a list of entries that won't be treated as targets for activation (these entries will instead receive no activation)
- 'consolidated_activations': defaults to False, user can pass a list of entries (or a list of lists of entries) that will have their activations consolidated to a single common activation
- 'ordered_overide': default to True, accepts boolean indicating if columns received as pandas ordered categoric will use that basis for order of the returned columns. Note this is deactivated when activation parameters are specified (all/add/less/consolidated).
- 'frequency_sort': boolean defaults to True, when activated the order of integer activations is sorted by frequency of entries as found in the train set, when deactivated sorting is alphabetic. The 0 activation is reserved for missing data.
- driftreport postmunge metrics: ordinal_dict / ordinal_overlap_replace / ordinal_activations_dict
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with full recovery
* ord4: derived by an ord3 transform followed by a mnmx transform. Useful as a scaled metric
(numeric in range 0-1) which ranks any redundant entries by frequency of occurrence.
* lbos: an ord3 encoding followed by downstream conversion to string dtype. This may be useful for
label sets passed to downstream libraries to ensure they treat labels as target for classification instead
of regression.
* 1010: converts categorical sets of >2 unique values to binary encoding (more memory
efficient than one-hot encoding). To apply 1010 to a "messy" feature with multiple columns in input headers can apply assigncat set bracket specification to root category 'cnsl'.
- useful for: our default categoric encoding for sets with number of entries below numbercategoryheustic (defaulting to 255)
- default infill: naninfill, with returned distinct activation set of all 0's
- default NArowtype: justNaN
- suffix appender: '\_1010\_#' where # is integer indicating order of 1010 columns
- assignparam parameters accepted:
- 'str_convert', boolean defaults as True for common encodings between numbers and string equivalents
e.g. 2 == '2'. Also can be passed as 'conditional_on_bytes' which resets to True when bytes entries are present in train set otherwise resets to False.
- 'null_activation': defaults to True for a distinct missing data encoding, when False missing data is grouped with another entry in the all 0 encoding. (Also accepts as 'Binary' which is for internal use.)
- 'all_activations': defaults to False, can pass as a list of all entries that will be targets for activations (which may have fewer or more entries than the set of unique values found in the train set, including entries not found in the train set), note NaN missing data representation will be added
- 'add_activations': defaults to False, user can pass as a list of entries that will be added as targets for activations (resulting in extra returned columns if those entries aren't present in the train set)
- 'less_activations': defaults to False, user can pass as a list of entries that won't be treated as targets for activation (these entries will instead receive no activation)
- 'consolidated_activations': defaults to False, user can pass a list of entries (or a list of lists of entries) that will have their activations consolidated to a single common activation. For consolidation with NaN missing data representation user should instead apply an assignnan conversion.
- 'max_zero': defaults to False, when activated the encodings are conducted to maximize 0 encoding representation for unique entries as sorted by frequency (e.g. most frequent entries have most zeros in their encoding.) This was implemented since 0 is the low energy state for quantum circuits. The root category '10mz' applies 1010 with this parameter defaulting to activated.
- driftreport postmunge metrics: _1010_binary_encoding_dict / _1010_overlap_replace /
_1010_binary_column_count / _1010_activations_dict
(for example if 1010 encoded to three columns based on number of categories <8,
it would return three columns with suffix appenders 1010_1, 1010_2, 1010_3)
- returned datatype: int8
- inversion available: yes with full recovery
* maxb / matx / ma10: categoric encodings that allow user to cap the number activations in the set.
maxb (ordinal), matx (one hot), and ma10 (binary).
- useful for: categoric sets where some outlier entries may not occur with enough frequency for training purposes
- default infill: plug value unique activation
- default NArowtype: justNaN
- suffix appender: '\_maxb' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'maxbincount': set a maximum number of activations (integer) default False
- 'minentrycount': set a minimum number of entries in train set to register an activation (integer) default False
- 'minentryratio': set a minimum ratio of entries in train set to register an activation (float between 0-1)
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: new_maxactivation / consolidation_count
- returned datatype: matx and ma10 as int8, maxb as conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with full recovery
* ucct: converts categorical sets to a normalized float of unique class count,
for example, a 10 row train set with two instances of 'circle' would replace 'circle' with 0.2
and comparable to test set independent of test set row count
- useful for: supplementing categoric sets with a proxy for activation frequency
- default infill: ratio of infill in train set
- default NArowtype: justNaN
- suffix appender: '_ucct' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: ordinal_dict / ordinal_overlap_replace / ordinal_activations_dict
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: no
* lngt/lngm/lnlg: returns string length of categoric entries (lngm followed by mnmx, lnlg by logn)
- useful for: supplementing categoric sets with a proxy for information content (based on string length)
- default infill: plug value of 3 (based on len(str(np.nan)) )
- default NArowtype: justNaN
- suffix appender: '_lngt' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: maximum, minimum, mean, std
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: no
* aggt: consolidate categoric entries based on user passed aggregate parameter
- useful for: performing upstream of categoric encoding when some entries are redundant
- default infill: none
- default NArowtype: justNaN
- suffix appender: '_aggt' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'aggregate' as a list or as a list of lists of aggregation sets
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: aggregate
- returned datatype: str (other categoric encodings can be returned downstream to return numeric)
- inversion available: yes with partial recovery
* smth: applies a one-hot encoding followed by a label smoothing operation to reduce activation value and increase null value. The smoothing is applied to train data but not validation or test data. Smoothing can be applied to test data in postmunge(.) by activating the traindata parameter.
- useful for: label smoothing, speculate there may be benefit for categoric encodings with noisy entries of some error rate
- default infill: none
- default NArowtype: justNaN
- suffix appender: '_smt0\_(entry)\_smth\_#' where # is integer in base configuration or based on the family tree category
- assignparam parameters accepted:
- note that parameters for the upstream onehot encoding can be passed in assignparam to the smt0 category (consistent to text transform), and smoothing parameters can be passed to the smth category
- 'activation' defaults to 0.9, a float between 0.5-1 to designate activation value
- 'LSfit' defaults to False, when True applies fitted label smoothing (consistent with fsmh)
- 'testsmooth' defaults to False, when True applies smoothing to test data in both automunge and postmunge
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: comparable to onht
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* fsmh: comparable to smth but applies by default a fitted label smoothing, in which null values are fit to ratio of activations corresponding to current activation. The smoothing is applied to train data but not validation or test data. Smoothing can be applied to test data in postmunge(.) by activating the traindata parameter. (Note that parameters for the upstream onehot encoding can be passed in assignparam to the fsm0 category (consistent to text transform), and smoothing parameters can be passed to the fsmh category
* hash: applies "the hashing trick" to convert high cardinality categoric sets to set of columns with integer word encodings
e.g. for an entry "Three word quote" may return three columns with integers corresponding to each of three words
where integer is determined by hashing, and also based on passed parameter vocab_size.
Note that hash strips out special characters. Uhsh is available if upstream uppercase conversion desired. Note that there is a possibility
of encoding overlap between entries with this transform. Also note that hash is excluded from ML infill
vocab_size calculated based on number of unique words found in train set times a multiplier (defaulting to 2), where if that
is greater than cap then reverts to cap. The hashing transforms are intended as an alternative to other categoric
encodings which doesn't require a conversion dictionary assembly for consistent processing of subsequent data, as
may benefit sets with high cardinality (i.e. high number of unique entries). The tradeoff is that inversion
is not supported as there is possibility of redundant encodings for different unique entries. Further detail on hashing
provided in the essay [Hashed Categoric Encodings with Automunge](https://medium.com/automunge/hashed-categoric-encodings-with-automunge-92c0c4b7668c).
- useful for: categoric sets with very high cardinality, default for categoric sets with (nearly) all unique entries
- default infill: none
- default NArowtype: justNaN
- suffix appender: '\_hash\_#' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'heuristic_multiplier', float defaults to 2
- 'heuristic_cap', integer defaults to 1024
- 'vocab_size', integer defaults to False, when assigned overrides heuristic
- 'space', defaults to ' ', this is used to extract words by space separator
- 'excluded_characters', defaults to [',', '.', '?', '!', '(', ')'], these characters are stripped prior to encoding
- 'salt', arbitrary string, defaults to empty string '', appended to entries to perturb encoding basis for privacy
- 'hash_alg', defaults to 'hash' for use of native python hash function for speed, 'md5' uses hashlib md5 function instead
- 'max_column_count', defaults to False, can pass as integer to cap the number of returned columns, in which case when
words are extracted the final column's encodings will be based on all remaining word and space characters inclusive
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: col_count (number of columns), vocab_size
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: no
* hsh2: similar to hash but does not partition entries by space separator, so only returns one column. Note this version doesn't scrub special characters prior to encoding.
- useful for: categoric sets with very high cardinality, default for categoric sets with number of entries exceeding numbercategoryheuristic (defaulting to 255)
- default infill: none
- default NArowtype: justNaN
- suffix appender: '_hsh2' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'heuristic_multiplier', float defaults to 2
- 'heuristic_cap', integer defaults to 1024
- 'vocab_size', integer defaults to False, when assigned overrides heuristic
- 'excluded_characters', a list of strings, defaults to [] (an empty set), these characters are stripped prior to encoding
- 'salt', arbitrary string, defaults to empty string '', appended to entries to perturb encoding basis for privacy
- 'hash_alg', defaults to 'hash' for use of native python hash function for speed, 'md5' uses hashlib md5 function instead
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: col_count (number of columns), vocab_size
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: no
* hs10: similar to hsh2 but returns activations in a set of columns with binary encodings, similar to 1010
- useful for: binary version of hsh2
- default infill: none
- default NArowtype: justNaN
- suffix appender: '\_hs10\_#' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'heuristic_multiplier', float defaults to 2
- 'heuristic_cap', integer defaults to 1024
- 'vocab_size', integer defaults to False, when assigned overrides heuristic
- 'excluded_characters', a list of strings, defaults to [] (an empty set), these characters are stripped prior to encoding
- 'salt', arbitrary string, defaults to empty string '', appended to entries to perturb encoding basis for privacy
- 'hash_alg', defaults to 'hash' for use of native python hash function for speed, 'md5' uses hashlib md5 function instead
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: col_count (number of columns), vocab_size
- returned datatype: int8
- inversion available: no
* UPCS: convert string entries to all uppercase characters
- useful for: performing upstream of categoric encodings when case configuration is irrelevant
- default infill: none
- default NArowtype: justNaN
- suffix appender: '_UPCS' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'activate', boolean defaults to True, False makes this a passthrough without conversion
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: activate
- returned datatype: str (other categoric encodings can be returned downstream to return numeric)
- inversion available: yes with partial recovery
* new processing functions Unht / Utxt / Utx2 / Utx3 / Uord / Uor2 / Uor3 / Uor6 / U101 / Ucct / Uhsh / Uhs2 / Uh10
- comparable to functions onht / text / txt2 / txt3 / ordl / ord2 / ord3 / ors6 / 1010 / ucct / hash / hsh2 / hs10
- but upstream conversion of all strings to uppercase characters prior to encoding
- (e.g. 'USA' and 'usa' would be consistently encoded)
- default infill: in uppercase conversion NaN's are assigned distinct encoding 'NAN'
- and may be assigned other infill methods in assigninfill
- default NArowtype: 'justNaN'
- suffix appender: '_UPCS' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: comparable to functions text / txt2 / txt3 / ordl / ord2 / ord3 / ors6 / 1010 / ucct
- returned datatype: comparable to functions onht / text / txt2 / txt3 / ordl / ord2 / ord3 / ors6 / 1010 / ucct / hash / hsh2 / hs10
- inversion available: yes
* ntgr/ntg2/ntg3: sets of transformations intended for application to integer sets of unknown interpretation
(such as may be continuous variables, discrete relational variables, or categoric). The ntgr family encodes
in multiple forms appropriate for each of these different types, such as to allow the ML training to identify
which is most useful. Reference the family trees below for composition details (can do a control-F search for ntgr etc).
- useful for: encoding integer sets of unknown interpretation
- default NArowtype: 'integer'
- ntgr set includes: ord4, retn, 1010, ordl
- ntg2 set includes: ord4, retn, 1010, ordl, pwr2
- ntg3 set includes: ord4, retn, ordl, por2
### Date-Time Data Normalizations
Date time processing transforms are implementations of two master functions: time and tmcs, which accept
various parameters associated with suffix, time scale, and sin/cos periodicity, etc. They segment time stamps by
time scale returned in separate columns. If a particular time scale is not present in training data it is omitted.
* date/dat2: for datetime formatted data, segregates data by time scale to multiple
columns (year/month/day/hour/minute/second) and then performs z-score normalization
- useful for: datetime entries of mixed time scales where periodicity is not relevant
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: includes appenders for (_year, _mnth, _days, _hour, _mint, _scnd)
- assignparam parameters accepted:
- timezone: defaults to False as passthrough, otherwise can pass time zone abbreviation
(useful to consolidate different time zones such as for bus hr bins)
for list of pandas accepted abbreviations see pytz.all_timezones
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: meanyear / stdyear / meanmonth / stdmonth / meanday / stdday /
meanhour / stdhour / meanmint / stdmint / meanscnd / stdscnd
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: pending
* year/mnth/days/hour/mint/scnd: segregated by time scale and z-score normalization
- useful for: datetime entries of single time scale where periodicity is not relevant
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: includes appenders for (_year, _mnth, _days, _hour, _mint, _scnd)
- driftreport postmunge metrics: timemean / timemax / timemin / timestd
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: pending
* mnsn/mncs/dysn/dycs/hrsn/hrcs/misn/mics/scsn/sccs: segregated by time scale and
dual columns with sin and cos transformations for time scale period (e.g. 12 months, 24 hrs, 7 days, etc)
- useful for: datetime entries of single time scale where periodicity is relevant
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: includes appenders for (mnsn/mncs/dysn/dycs/hrsn/hrcs/misn/mics/scsn/sccs)
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: timemean / timemax / timemin / timestd
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: pending
* mdsn/mdcs: similar sin/cos treatment, but for combined month/day, note that periodicity is based on
number of days in specific months, including account for leap year, with 12 month periodicity
- useful for: datetime entries of single time scale combining months and days where periodicity is relevant
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: includes appenders for (mdsn/mdcs)
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: timemean / timemax / timemin / timestd
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: pending
* dhms/dhmc: similar sin/cos treatment, but for combined day/hour/min, with 7 day periodicity
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: includes appenders for (dhms/dhmc)
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: timemean / timemax / timemin / timestd
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: pending
* hmss/hmsc: similar sin/cos treatment, but for combined hour/minute/second, with 24 hour periodicity
- useful for: datetime entries of single time scale combining time scales where periodicity is relevant
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: includes appenders for (hmss/hmsc)
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: timemean / timemax / timemin / timestd
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: pending
* mssn/mscs: similar sin/cos treatment, but for combined minute/second, with 1 hour periodicity
- useful for: datetime entries of single time scale combining time scales below minute threshold where periodicity is relevant
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: includes appenders for (hmss/hmsc)
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: timemean / timemax / timemin / timestd
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: pending
* dat6: default transformation set for time series data, returns:
'year', 'mdsn', 'mdcs', 'hmss', 'hmsc', 'bshr', 'wkdy', 'hldy'
- useful for: datetime entries of multiple time scales where periodicity is relevant, default date-time encoding, includes bins for holidays, business hours, and weekdays
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: includes appenders for ('year', 'mdsn', 'mdcs', 'hmss', 'hmsc', 'bshr', 'wkdy', 'hldy')
- assignparam parameters accepted:
- timezone: defaults to False as passthrough, otherwise can pass time zone abbreviation
(useful to consolidate different time zones such as for bus hr bins)
for list of pandas accepted abbreviations see pytz.all_timezones
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: meanyear / stdyear / mean_mdsn / mean_mdcs / mean_hmss / mean_hmsc
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: pending
### Date-Time Data Bins
* wkdy: boolean identifier indicating whether a datetime object is a weekday
- useful for: supplementing datetime encodings with weekday bins
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: '_wkdy' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: activationratio
- returned datatype: int8
- inversion available: pending
* wkds/wkdo: encoded weekdays 0-6, 'wkds' for one-hot via 'text', 'wkdo' for ordinal via 'ord3'
- useful for: ordinal version of preceding wkdy
- default infill: 7 (e.g. eight days a week)
- default NArowtype: datetime
- suffix appender: '_wkds' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: mon_ratio / tue_ratio / wed_ratio / thr_ratio / fri_ratio / sat_ratio /
sun_ratio / infill_ratio
- returned datatype: wkds as int8, wkdo as uint8
- inversion available: pending
* mnts/mnto: encoded months 1-12, 'mnts' for one-hot via 'text', 'mnto' for ordinal via 'ord3'
- useful for: supplementing datetime encodings with month bins
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: '_mnts' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: infill_ratio / jan_ratio / feb_ratio / mar_ratio / apr_ratio / may_ratio /
jun_ratio / jul_ratio / aug_ratio / sep_ratio / oct_ratio / nov_ratio / dec_ratio
- returned datatype: mnts as int8, mnto as uint8
- inversion available: pending
* bshr: boolean identifier indicating whether a datetime object falls within business
hours (9-5, time zone unaware)
- useful for: supplementing datetime encodings with business hour bins
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: '_bshr' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'start' and 'end', which default to 9 and 17
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: activationratio
- returned datatype: int8
- inversion available: pending
* hldy: boolean identifier indicating whether a datetime object is a US Federal
holiday
- useful for: supplementing datetime encodings with holiday bins
- default infill: adjinfill
- default NArowtype: datetime
- suffix appender: '_hldy' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'holiday_list', should be passed as a list of strings of dates of additional holidays to be recognized
e.g. ['2020/03/30']
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: activationratio
- returned datatype: int8
- inversion available: pending
### Differential Privacy Noise Injections
The DP family of transformations are for purposes of stochastic noise injection to train and/or test features. Noise is sampled by default with support of numpy.random (which as of version 1.17.0 defaults to the PCG pseudo random number generator). Supplemental entropy seedings or alternate random samplers can be applied with the automunge(.)/postmunge(.) parameters entropy_seeds and random_generator. The transforms default to injecting noise to training data and not test data, although trainnoise/testnoise parameters can be activated for any combination of the two. For cases where test data injections are not defaulted with the testnoise parameter, test data can be treated as train data for purposes of noise with the postmunge(.) traindata parameter. Please refer to the essay [Noise Injections with Automunge](https://medium.com/automunge/noise-injections-with-automunge-7ebb672216e2) for further detail.
Each of the DP root categories (e.g. DPnb, DPmm, DP**, etc) defaults to injecting noise to train data and not to test data (i.e. trainnoise=True, testnoise=False), however each have otherwise equivalent variations as DT root categories (e.g. DTnb, DTmm, DT**, etc) which default to injecting to test data and not to train data (i.e. trainnoise=False, testnoise=True), or as DB root categories (e.g. DBnb, DBmm, DB**, etc) which default to injecting to both train and test data (i.e. trainnoise=True, testnoise=True). In each case these defaults can be updated by parameter assigment.
Note that when passing parameters to a few of these functions (specifically the hashing variants), the transformation
category associated with the transformation function may be different than the root category, as noted below DPh1/DPh2/DPhs.
Note that DP transforms can be applied in conjunction with the automunge(.) or postmunge(.) noise_augment
parameter to automatically prepare additional concatenated duplicates as a form of data augmentation.
For distribution sampled numeric or weighted sampling categoric categories, the DP transforms have an option to scale different segments of a feature's noise profile to correspond to different attribute segments of an adjacent protected categoric feature, which is expected to benefit loss discrepency for the attributes of that protected feature.
* DPnb: applies a z-score normalization followed by a noise injection to train data sampled
from a Gaussian which defaults to 0 mu and 0.06 sigma, but only to a subset of the data based
on flip_prob parameter.
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream nmbr (as DPn3) cleans data
- default NArowtype: numeric
- suffix appender: '_DPn3_DPnb'
- assignparam parameters accepted:
- 'noisedistribution' as {'normal', 'laplace', 'uniform'}, defaults to normal, used to select between gaussian (normal), laplace, and uniform distributed noise, also accepts one of {'abs_normal', 'abs_laplace', 'abs_uniform', 'negabs_normal', 'negabs_laplace', 'negabs_uniform'}, where the prefix 'abs' refers to injecting only positive noise by taking absolute value of sampled noise, and the prefix negabs refers to injecting only negative noise by taking the negative absolute value of sampled noise
- 'flip_prob' for percent of entries receiving noise injection, defaults to 0.03
- 'mu' for noise mean, defaults to 0
- 'sigma' for noise scale, defaults to 0.06 - note that for uniform sampling high is (sigma-mu) and low is (mu-sigma)
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- parameters should be passed to 'DPnb' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- 'rescale_sigmas': defaults as False, True rescales sigma specifications based on standard deviation of feature in training set (this option intended for use in conjunction with DPne which injects numeric noise without applying a preceding normalization)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_noisedistribution, test_flip_prob, test_mu, test_sigma}, which otherwise default to test_noisedistribution, test_mu, and test_flip_prob matching the train data parameters and test_sigma=0.03
- please note that each of the noise distribution parameters {sigma, flip_prob, test_sigma, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {mu, sigma, flip_prob, test_mu, test_sigma, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- 'protected_feature' defaults to False, accepts input column header string specifiation, scales different segments of this transform's target feature's noise profile to correspond to different attribute segments of specified adjacent protected categoric feature, which the hypothesis is that this may benefit loss discrepency for the attributes of that protected feature
- driftreport postmunge metrics: mu, sigma for DPnm, upstream z score via nmbr for others
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
* DPmm: applies a min-max scaling followed by a noise injection to train data sampled
from a Gaussian which defaults to 0 mu and 0.03 sigma. Note that noise is scaled to ensure output
remains in range 0-1 (by scaling neg noise when scaled input <0.5 and scaling pos noise when scaled input >0.5)
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream mnmx (as DPm2) cleans data
- default NArowtype: numeric
- suffix appender: '_DPm2_DPmm'
- assignparam parameters accepted:
- 'noisedistribution' as {'normal', 'laplace', 'uniform'}, defaults to normal, used to select between gaussian (normal), laplace, and uniform distributed noise, also accepts one of {'abs_normal', 'abs_laplace', 'abs_uniform', 'negabs_normal', 'negabs_laplace', 'negabs_uniform'}, where the prefix 'abs' refers to injecting only positive noise by taking absolute value of sampled noise, and the prefix negabs refers to injecting only negative noise by taking the negative absolute value of sampled noise. *Note that we recommend deactivating parameter noise_scaling_bias_offset in conjunction with abs or negabs scenarios, otherwise the sampled mean will be shifted resulting in noise with zero mean.
- 'flip_prob' for percent of entries receiving noise injection, defaults to 0.03
- 'mu' for noise mean, defaults to 0
- 'sigma' for noise scale, defaults to 0.03 - note that for uniform sampling high is (sigma-mu) and low is (mu-sigma)
- 'noise_scaling_bias_offset', boolean defaulting to True, activates an evaluation of scaled noise to offset the sampled noise mean to closer approximate a resulting zero mean for the scaled noise (helps to mitigate potential for bias from noise scaling in cases of imbalanced feature distribution).
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- parameters should be passed to 'DPmm' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_noisedistribution, test_flip_prob, test_mu, test_sigma}, which otherwise default to test_noisedistribution, test_mu, and test_flip_prob matching the train data parameters and test_sigma=0.02
- please note that each of the noise distribution parameters {sigma, flip_prob, test_sigma, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {mu, sigma, flip_prob, test_mu, test_sigma, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- 'protected_feature' defaults to False, accepts input column header string specifiation, scales different segments of this transform's target feature's noise profile to correspond to different attribute segments of specified adjacent protected categoric feature, which the hypothesis is that this may benefit loss discrepency for the attributes of that protected feature
- driftreport postmunge metrics: mu, sigma for DPnm, upstream minmax via mnmx for others
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
* DPrt: applies a retn normalization with a noise injection to train data sampled
from a Gaussian which defaults to 0 mu and 0.03 sigma. Note that noise is scaled to ensure output
remains in range 0-1 (by scaling neg noise when scaled and centered input <0.5 and scaling pos noise when scaled and centered input >0.5)
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: comparable to retn with mean (calculated before noise injection)
- suffix appender: '_DPrt' in base configuration or based on the family tree category
- assignparam parameters accepted:
- parameters comparable to retn divisor / offset / multiplier / cap / floor / stdev_cap defaulting to 'minmax'/0/1/False/False/False, also
- 'noisedistribution' as {'normal', 'laplace', 'uniform'}, defaults to normal, used to select between gaussian (normal), laplace, and uniform distributed noise, also accepts one of {'abs_normal', 'abs_laplace', 'abs_uniform', 'negabs_normal', 'negabs_laplace', 'negabs_uniform'}, where the prefix 'abs' refers to injecting only positive noise by taking absolute value of sampled noise, and the prefix negabs refers to injecting only negative noise by taking the negative absolute value of sampled noise. *Note that we recommend deactivating parameter noise_scaling_bias_offset in conjunction with abs or negabs scenarios, otherwise the sampled mean will be shifted resulting in noise with zero mean.
- 'mu' for noise mean, defaults to 0,
- 'sigma' for noise scale, defaults to 0.03 - note that for uniform sampling high is (sigma-mu) and low is (mu-sigma)
- 'flip_prob' for percent of entries receiving noise injection, defaults to 0.03
- 'noise_scaling_bias_offset', boolean defaulting to True, activates an evaluation of scaled noise to offset the sampled noise mean to closer approximate a resulting zero mean for the scaled noise (helps to mitigate potential for bias from noise scaling in cases of imbalanced feature distribution)
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- Parameters should be passed to 'DPrt' transformation category from family tree.
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_noisedistribution, test_flip_prob, test_mu, test_sigma}, which otherwise default to test_noisedistribution, test_mu, and test_flip_prob matching the train data parameters and test_sigma=0.02
- please note that each of the noise distribution parameters {sigma, flip_prob, test_sigma, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {mu, sigma, flip_prob, test_mu, test_sigma, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- 'protected_feature' defaults to False, accepts input column header string specifiation, scales different segments of this transform's target feature's noise profile to correspond to different attribute segments of specified adjacent protected categoric feature, which the hypothesis is that this may benefit loss discrepency for the attributes of that protected feature
- driftreport postmunge metrics: mu, sigma, flip_prob for DPrt, also metrics comparable to retn
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
* DLmm/DLnb/DLrt: comparable to DPmm/DPnb/DPrt but defaults to laplace distributed noise instead of gaussian (normal)
with same parameters accepted (where mu is center of noise, sigma is scale, and flip-prob is ratio)
and with same default parameter values
* DPqt/DPbx: numeric noise injections with distribution conversions by the qttf/bxcx transforms
* DPbn: applies a two value binary encoding (bnry) followed by a noise injection to train data which
flips the activation per parameter flip_prob which defaults to 0.03
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream bnry (as DPb2) cleans data
- default NArowtype: justNaN
- suffix appender: '_DPb2_DPbn'
- assignparam parameters accepted:
- 'flip_prob' for percent of activation flips (defaults to 0.03),
- 'weighted' boolean defaults to True for weighted noise sampling from set of unique entries in train data. When False
noise sampling is by a uniform draw from set of unique entries as found in train data (which is a little more computationally efficient).
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- noise injection parameters should be passed to 'DPbn' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_flip_prob, test_weighted}, which otherwise default to test_weighted matching the train data and test_flip_prob = 0.01
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- 'protected_feature' defaults to False, accepts input column header string specifiation, scales different segments of this transform's target feature's noise profile to correspond to different attribute segments of specified adjacent protected categoric feature, which the hypothesis is that this may benefit loss discrepency for the attributes of that protected feature
- driftreport postmunge metrics: flip_prob for DPbn, upstream binary via bnry for others
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
* DPod: applies an ordinal encoding (ord3) followed by a noise injection to train data which
flips the activations per parameter flip_prob which defaults to 0.03 to a weighted random draw from the
set of activations (including the current activation so actual flip percent is < flip_prob based
on number of activations)
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream ord3 (as DPo4) cleans data
- default NArowtype: justNaN
- suffix appender: '_DPo4_DPod'
- assignparam parameters accepted:
- 'flip_prob' for percent of activation flips (defaults to 0.03),
- 'weighted' boolean defaults to True for weighted noise sampling from set of unique entries in train data. When False
noise sampling is by a uniform draw from set of unique entries as found in train data (which is a little more computationally efficient).
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- noise injection parameters should be passed to 'DPod' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- 'passthrough': defaults to False, when True the data type conversion is turned off to allow DPod to be applie for pass-through categoric
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_flip_prob, test_weighted}, which otherwise default to test_weighted matching the train data and test_flip_prob = 0.01
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- 'protected_feature' defaults to False, accepts input column header string specifiation, scales different segments of this transform's target feature's noise profile to correspond to different attribute segments of specified adjacent protected categoric feature, which the hypothesis is that this may benefit loss discrepency for the attributes of that protected feature
- driftreport postmunge metrics: flip_prob for DPod, upstream ordinal via ord3 for others
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes
* DPoh: applies a one hot encoding followed by a noise injection to train data which
flips the activations per parameter flip_prob which defaults to 0.03 to a weighted random draw from the
set of activations (including the current activation so actual flip percent is < flip_prob based
on number of activations). Note that assignparam for noise injection
can be passed directly to DPoh.
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream ord3 (as DPo5) cleans data
- default NArowtype: justNaN
- suffix appender: 'DPo5\_#\_DPoh' where # is integer for each categoric entry
- assignparam parameters accepted:
- 'flip_prob' for percent of activation flips (defaults to 0.03),
- 'weighted' boolean defaults to True for weighted noise sampling from set of unique entries in train data. When False
noise sampling is by a uniform draw from set of unique entries as found in train data (which is a little more computationally efficient).
- 'swap_noise' boolean defaults False, instead of a random flip to alternate activation, randomly samples from feature rows. Has a similar effect as weighted sampling, however when injecting to test data requires multiple samples for comparable effect
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- noise injection parameters should be passed to 'DPo2' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_flip_prob, test_weighted}, which otherwise default to test_weighted matching the train data and test_flip_prob = 0.01
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- 'protected_feature' defaults to False, accepts input column header string specifiation, scales different segments of this transform's target feature's noise profile to correspond to different attribute segments of specified adjacent protected categoric feature, which the hypothesis is that this may benefit loss discrepency for the attributes of that protected feature
- driftreport postmunge metrics: comparable to onht
- returned datatype: int8
- inversion available: yes
* DP10: applies a binarization followed by a noise injection to train data which
flips the activations per parameter flip_prob which defaults to 0.03 to a weighted random draw from the
set of activations (including the current activation so actual flip percent is < flip_prob based
on number of activations). Note that assignparam for noise injection
can be passed directly to DP10.
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream ord3 (as DPo6) cleans data
- default NArowtype: justNaN
- suffix appender: 'DPo6\_#\_DP10' where # is integer for each column which collectively encode categoric entries
- assignparam parameters accepted:
- 'flip_prob' for percent of activation flips (defaults to 0.03),
- 'weighted' boolean defaults to True for weighted noise sampling from set of unique entries in train data. When False
noise sampling is by a uniform draw from set of unique entries as found in train data (which is a little more computationally efficient).
- 'swap_noise' boolean defaults False, instead of a random flip to alternate activation, randomly samples from feature rows. Has a similar effect as weighted sampling, however when injecting to test data requires multiple samples for comparable effect
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- noise injection parameters should be passed to 'DPo3' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_flip_prob, test_weighted}, which otherwise default to test_weighted matching the train data and test_flip_prob = 0.01
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- 'protected_feature' defaults to False, accepts input column header string specifiation, scales different segments of this transform's target feature's noise profile to correspond to different attribute segments of specified adjacent protected categoric feature, which the hypothesis is that this may benefit loss discrepency for the attributes of that protected feature
- driftreport postmunge metrics: comparable to 1010
- returned datatype: int8
- inversion available: yes
* DPh1: applies a multi column hash binarization via hs10 followed by a multi column categoric noise injection via DPmc, which
flips the activation sets per parameter flip_prob which defaults to 0.03 to a weighted random draw from the
set of activation sets (including the current activation set so actual flip percent is < flip_prob based
on number of activations). Note that assignparam for noise injection
can be passed to the intermediate category DPo3 which applies the DPod transform. Defaults to weighted sampling.
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream hs10 cleans data
- default NArowtype: justNaN
- suffix appender: '\DPh1\_#\_DPmc' where # is integer for each column which collectively encode categoric entries
- assignparam parameters accepted:
- 'flip_prob' for percent of activation flips (defaults to 0.03),
- 'swap_noise' boolean defaults False, instead of a random flip to alternate activation, randomly samples from feature rows. Has a similar effect as weighted sampling, however when injecting to test data requires multiple samples for comparable effect
- 'weighted' boolean defaults to True for weighted noise sampling from set of unique entries in train data. When False
noise sampling is by a uniform draw from set of unique entries as found in train data (which is a little more computationally efficient).
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- noise injection parameters should be passed to 'DPmc' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_flip_prob, test_weighted}, which otherwise default to test_weighted matching the train data and test_flip_prob = 0.01
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- 'protected_feature' defaults to False, accepts input column header string specifiation, scales different segments of this transform's target feature's noise profile to correspond to different attribute segments of specified adjacent protected categoric feature, which the hypothesis is that this may benefit loss discrepency for the attributes of that protected feature
- driftreport postmunge metrics: hs10 metrics
- returned datatype: int8
- inversion available: yes
* DPhs: applies a multi column hash binarization via hash followed by a multi column categoric noise injection via mlhs, which
flips the activations in each column individually per parameter flip_prob which defaults to 0.03 to a weighted random draw from the
set of activations (including the current activation so actual flip percent is < flip_prob based
on number of activations). assign_param for mlhs requires passing parameters to DPod through the mlti assignparam norm_params as noted below, and any noise distribution parameters should be redundantly passed to the mlhs call for purposes of setting entropy seeds. For example:
```
assignparam = {'mlhs' :
{'targetinputcolumn' :
{'testnoise' : True,
'norm_params' : {'testnoise' : True}}}}
```
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream hs10 cleans data
- default NArowtype: justNaN
- suffix appender: '\DPhs\_#\_mlhs\_DPod' where # is integer for each column which collectively encode categoric entries
- assignparam parameters accepted:
- 'flip_prob' for percent of activation flips (defaults to 0.03),
- 'weighted' boolean defaults to True for weighted noise sampling from set of unique entries in train data. When False
noise sampling is by a uniform draw from set of unique entries as found in train data (which is a little more computationally efficient).
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- DPod noise injection assignparam parameters can be passed to the mlhs parameter 'norm_params' embedded in a dictionary (e.g. assignparam = {'mlhs' : {inputcolumn : {'norm_params' : {'flip_prob' : 0.05}}}} ) Defaults to weighted sampling. (The norm_params approach is associated with use of the mlti transform which is what mlhs applies)
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_flip_prob, test_weighted}, which otherwise default to test_weighted matching the train data and test_flip_prob = 0.01
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- 'protected_feature' defaults to False, accepts input column header string specifiation, scales different segments of this transform's target feature's noise profile to correspond to different attribute segments of specified adjacent protected categoric feature, which the hypothesis is that this may benefit loss discrepency for the attributes of that protected feature
- driftreport postmunge metrics: hash metrics
- returned datatype: conditional integer based on hashing vocab size
- inversion available: yes
* DPh2: applies a single column hash binarization via hsh2 followed by a single column categoric noise injection via DPod function (as DPo7), which
flips the activations per parameter flip_prob which defaults to 0.03 to a weighted random draw from the
set of activations (including the current activation so actual flip percent is < flip_prob based
on number of activations).
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream hs10 cleans data
- default NArowtype: justNaN
- suffix appender: '\DPh2\_DPo7'
- assignparam parameters accepted:
- 'flip_prob' for percent of activation flips (defaults to 0.03),
- 'weighted' boolean defaults to True for weighted noise sampling from set of unique entries in train data. When False
noise sampling is by a uniform draw from set of unique entries as found in train data (which is a little more computationally efficient).
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- noise injection parameters should be passed to 'DPo7' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_flip_prob, test_weighted}, which otherwise default to test_weighted matching the train data and test_flip_prob = 0.01
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- 'protected_feature' defaults to False, accepts input column header string specifiation, scales different segments of this transform's target feature's noise profile to correspond to different attribute segments of specified adjacent protected categoric feature, which the hypothesis is that this may benefit loss discrepency for the attributes of that protected feature
- driftreport postmunge metrics: hash metrics
- returned datatype: conditional integer based on hashing vocab size
- inversion available: yes
* DPns: applies a z-score normalization via nmbr followed by a swap_noise injection by DPmc, which for noise targets randomly samples between other rows in the feature. Swap noise is an alternate convention than the distribution sampling applied in DPnb.
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream transform cleans data
- default NArowtype: justNaN
- suffix appender: '\DPn4\_DPns'
- assignparam parameters accepted:
- 'flip_prob' for percent of activation flips (defaults to 0.03),
- 'swap_noise' boolean defaults True, randomly samples from rows (we don't recommend the False scenario when applied downstream of continuous features which is intended for injection to categoric features)
- 'weighted' - not supported in conjunction with swap_noise = True
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- noise injection parameters should be passed to 'DPmc' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_flip_prob, test_weighted}, which otherwise default to test_weighted matching the train data and test_flip_prob = 0.01
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- driftreport postmunge metrics: nmbr metrics
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
* DP1s: applies a 1010 binarization followed by a swap_noise injection by DPmc, which for noise targets randomly samples between other rows in the feature. Swap noise is an alternate convention than the weighted sampling applied in DP10.
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: the DP function does not apply a default infill assume upstream transform cleans data
- default NArowtype: justNaN
- suffix appender: 'DPo8\_#\_DP1s' where # is integer for each column which collectively encode categoric entries
- assignparam parameters accepted:
- 'flip_prob' for percent of activation flips (defaults to 0.03),
- 'swap_noise' boolean defaults True, randomly samples from rows (the False scenario results in an encoding comparable to DP10)
- 'weighted' - not supported in conjunction with swap_noise = True
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- noise injection parameters should be passed to 'DPmc' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_flip_prob, test_weighted}, which otherwise default to test_weighted matching the train data and test_flip_prob = 0.01
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- driftreport postmunge metrics: 1010 metrics
- returned datatype: int8
- inversion available: yes
* DPsk: applies a masking of sampled entries with a mask_value defaulting to the integer 0. As configured in default process_dict specification treats data as full pass-through without NArow aggregation or infill, similar to DPne and DPse noted below. Can also be used to add discrete noise to continuous features by the additive parameter.
- useful for: noise injection for data augmentation, model perturbation for ensembles, differential privacy
- default infill: does notapply infill
- default NArowtype: exclude
- suffix appender: '_DPsk'
- assignparam parameters accepted:
- 'mask_value' the value injected to masked entries, defaults to integer 0
- 'additive' boolean defaults as False, for adding discrete noise to continuous numeric features, results in mask value being added to selected entries instead of replaced
- 'flip_prob' for percent of activation flips (defaults to 0.03),
- 'trainnoise' defaults to True, when False noise is not injected to training data in automunge or postmunge
- 'testnoise' defaults to False, when True noise is injected to test data in both automunge and postmunge by default
- noise injection parameters should be passed to 'DPsk' transformation category from family tree
- 'suffix': to change suffix appender (leading underscore added internally)
- when activating testnoise, test data specific noise distribution parameters can be passed to {test_flip_prob}, which otherwise default to test_flip_prob = 0.01
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as list of candidate values for a unique sampling applied in automunge and postmunge.
- please note that each of the noise distribution parameters {flip_prob, test_flip_prob} can be passed as scipy.stats distribution for a uniquely sampled value with each application (this was implemented to support some experiments associated with noise_augment).
- 'retain_basis' accepts boolean defaulting to False, the use is associated with parameters passed as lists or distributions, when True the sampled basis from automunge(.) is carried through to postmunge(.) instead of a unique sampling for each
- the DP transforms also accept parameters random_generator and sampling_resource_dict which are derived internally based on automunge or postmunge parameters
- driftreport postmunge metrics: mask_value, other noise parameters
- returned datatype: consistent with input
- inversion available: yes
* DPse: for full pass-through other than swap noise injection (i.e. may be applied to numeric or categoric features with string entries). Comparable parameters supported to DPmc (swap_noise defaults to True). Only other edits are suffix appender on the returned column header. Excluded from ML infill and NArw aggregation. DPse may be suitable for incorporating noise injections to categoric test features into a prior prepared pipeline. A similar pass-through transform for numeric features with distribution sampled injections is available as DPne as noted above. Note that this can be applied to multi-column input sets by assigncat specification that replaces a single input header string with a {set} of input header strings.
* DPpc: for full pass-through other than weighted categoric injection (may be applie to categoric features with both numeric and string entries). Comparable parameter support to DPod (passthrough defaults to True). Excluded from ML infill and NArw aggregation. DPpc is an alternate to DPse for passthrough noise to categoric sets that fits the noise weightings to the train data as opposed to mathcing the train or test profile. Also has benefit fo protected_feature support.
* DPmp: similar to DPpc but can be applied to multi-column sets, such as e.g. to inject noise into one hot encoded categoric features. Can be applied to multi-column input sets by assigncat specification that replaces a single input header string with a {set} of input header strings.
* DPne: for full pass-through other than numeric noise injection (i.e. no normalization applied). Comparable parameters supported to DPnb, samples gaussian by default also has laplace support. Note that for DPne the rescale_sigmas option defaults to True such that specified sigma parameters are rescaled by multiplication with the training set standard deviation, thus allowing common default sigma options independant of feature scale. For user specified sigma parameters they will also be rescaled unless rescale_sigmas has been deactivated. Only other edits to returned feature other than noise injection are conversion to float dtype / non numeric to NaN and suffix appender on the returned column header. Excluded from ML infill and NArw aggregation. DPne may be suitable for incorporating noise injections to numeric test features into a prior prepared pipeline. Includes protected_feature support.
Please note that DPse (passthrough swap noise e.g. for categoric), DPne (passthrough gaussian or laplace noise for numeric), DPsk (passthrough mask noise for numeric or categoric), and excl (passthrough without noise) can be used in tandem to pass a dataframe to automunge(.) for noise injection without other edits or infill, such as could be used to incorporate noise into an existing tabular pipeline. When limited to these three root categories the returned dataframe will match the same order of columns with only edits other than noise as updated column headers and DPne will overide any data types other than float. (To retain same order of rows can deactivate shuffletrain parameter.)
### Misc. Functions
* excl: passes source column un-altered, no transforms, data type conversion, or infill. The feature is excluded from ML infill basis of all other features. If a passthrough column is desired to be included in ML infill basis for surrounding features, it should instead be passed to one of the other passthrough transforms, such as exc2 for continuous numeric, exc5 for ordinal encoded integers, or exc8 for continuous integers. Data returned from excl may be non-numeric. excl has a special suffix convention in the library in that the column is returned without a suffix appender (to signify full pass-through), if suffix retention is desired it is available by the automunge(.) excl_suffix parameter.
Note that for assignnan designation of infill conversions, excl is excluded from 'global' assignments
(although may still be assigned explicitly under assignnan columns or categories entries). excl also retains original form of entries that for other transforms are converted to missing data markers, such as None or inf.
- useful for: full passthrough sets
- default infill: none
- default NArowtype: exclude
- suffix appender: None or '\_excl' (dependent on automunge(.) excl_suffix parameter)
- assignparam parameters accepted: none
- driftreport postmunge metrics: none
- returned datatype: retains data type of received data
- inversion available: yes
* exc2/exc3/exc4/exc6: passes source column unaltered other than force to numeric, adjinfill applied
(exc3 and exc4 have downstream standard deviation or power of 10 bins aggregated such as may be beneficial
when applying TrainLabelFreqLevel to a numeric label set). For use without NArw aggregation use exc6/
- useful for: numeric pass-through sets, feature included in surrounding ML infill models
- default infill: adjinfill
- default NArowtype: numeric
- suffix appender: '_exc2' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: none
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes
* exc5/exc8: passes source column unaltered other than force to numeric, adjinfill applied for non-integers. exc5 is for ordinal encoded integers, exc8 is for continuous integers. For use without NArw aggregation use exc7/exc9
- useful for: passthrough integer sets, feature included in surrounding ML infill models
- default infill: adjinfill
- default NArowtype: integer
- suffix appender: '_exc5' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- 'integertype': sets the convention for returned datatype exc5 defaults to 'singlct', exc8 defaults to 'integer'
- driftreport postmunge metrics: none
- returned datatype: exc5 is conditional uint based on size of encoding space, exc8 is int32
- inversion available: yes
* eval: performs data property evaluation consistent with default automation to designated column
- useful for: applying automated evaluation to distinct columns for cases where default automated evaluation turned off by powertransform='excl'
- default infill: based on evaluation
- default NArowtype: based on evaluation
- suffix appender: based on evaluation
- assignparam parameters accepted: none
- driftreport postmunge metrics: none
- returned datatype: based on transformation applied
- inversion available: contingent on result
* ptfm: performs distribution property evaluation consistent with the automunge powertransform
parameter activated to designated column
- useful for: applying automated powertransform evaluation to distinct columns
- default infill: based on evaluation
- default NArowtype: based on evaluation
- suffix appender: based on evaluation
- assignparam parameters accepted: none
- driftreport postmunge metrics: none
- returned datatype: based on transformation applied
- inversion available: contingent on result
* copy: create new copy of column, may be used when applying the same transform to same column more
than once with different parameters as an alternate to defining a distinct category processdict entry for each redundant application.
This also may be useful when defining a family tree where the shortest path isn't the desired inversion path, in which case
can add some intermediate copy operations to shortest path until inversion selects the desired path
(as inversion operates on heuristic of selecting shortest transformation path with full information retention,
unless full information retention isn't available then the shortest path without full information retention).
Does not prepare column for ML on its own (e.g. returned data will carry forward non-numeric entries and will not conduct infill).
- default infill: exclude
- default NArowtype: exclude
- suffix appender: '_copy' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: none
- returned datatype: consistent with input
- inversion available: yes
* shfl: shuffles the values of a column based on passed randomseed (Note that returned data may not
be numeric and predictive methods like ML infill and feature selection may not work for that scenario
unless an additional transform is applied downstream.)
- useful for: shuffle useful to negate feature from influencing inference
- default infill: naninfill
- default NArowtype: justNAN
- suffix appender: '_shfl' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: none
- returned datatype: consistent with input
- inversion available: no
* mlti: mlti is a category that may take as input a set of one or more columns returned from an upstream transform, for example this could be a multi-column set returned from a concurrent_nmbr containing multiple columns of continuous numeric entries (or otherwise take a single column input when applied to an upstream primitive). mlti applies a normalization to each of the columns on an independent basis. The normalization defaults to z-score via nmbr or alternate transforms may be designated by assignparam. (Currently mlti is not defined as a root category, but is available for use as a tree category.) mlti is defined in process_dict based on concurrent_nmbr MLinfilltype. mlti may be used to apply an arbitrary transformation category to each column from a set of columns returned from a transform (such as for a concurrent MLinfilltype). The MLinfilltype basis for mlti is concurrent_nmbr, meaning it assumes returned columns are continuous numeric. For concurrent_ordl MLinfilltype can either overwrite processdict or make use of mlto. Returned concurrent_act support is available by overwriting the processdict entry.
- useful for: normalizing a set of numeric features returned from an upstream transform
- default infill: consistent with the type of normalization selected
- default NArowtype: justNaN
- suffix appender: '\_mlti\_' + suffix associated with the normalization
- assignparam parameters accepted:
- 'norm_category': defaults to 'nmbr', used to specify type of normalization applied to each column. Used to access transformation functions from process_dict.
- 'norm_params': defaults to empty dictionary {}, used to pass parameters to the normalization transform, e.g. as {parameter : value}. Note that parameters can also be passed to the norm_category through the assignparam automunge(.) parameter, with any specifications (such as to global_assignparam or default_assignparam) taking precedence over specifications through norm_params.
- 'dtype': accepts one of {'float', 'conditionalinteger', 'mlhs'}, defaults to float. conditionalinteger is for use with mlto. 'mlhs' is for use with mlhs.
- driftreport postmunge metrics: records drift report metrics included with the normalization transform
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: based on normalization transform inversion (if norm_category does not support inversion a passthrough inversion is applied)
* mlto: comparable to mlti but intended for use with returning multiple ordinal encoded columns. mlto is defined in process_dict based on concurrent_ordl MLinfilltype.
- useful for: ordinal encoding a set of categoric features returned from an upstream transform
- default infill: consistent with the type of ordinal encoding selected
- default NArowtype: justNaN
- suffix appender: '\_mlto\_' + suffix associated with the normalization
- assignparam parameters accepted:
- 'norm_category': defaults to 'ord3', used to specify type of ordinal encoding applied to each column. Used to access transformation functions from process_dict.
- 'norm_params': defaults to empty dictionary {}, used to pass parameters to the normalization transform, e.g. as {parameter : value}
- 'dtype': accepts one of {'float', 'conditionalinteger', 'mlhs'}, defaults to conditionalinteger.
- driftreport postmunge metrics: records drift report metrics included with the normalization transform
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: based on normalization transform inversion (if norm_category does not support inversion a passthrough inversion is applied)
* bnst/bnso: intended for use downstream of multicolumn boolean integer sets, such as those returned from MLinfilltype multirt, 1010, concurrent_act. bnst serves to aggregate the multicolumn representation into a single column encoding. bnst returns a string representation, bnso performs a downstream ordinal encoding. Intended for sets with boolean integer entries.
- useful for: some downstream libraries prefer label sets in single column representations. This allows user to convert a multicolumn to single column for this or some other purpose.
- default infill: zeroinfill (assumes infill performed upstream.)
- default NArowtype: justNaN
- suffix appender: '_bnst'
- assignparam parameters accepted:
- suffix: defaults to tree category, accepts string
- upstreaminteger: defaults to True for boolean integer input, when False can receive other single character entries, although inversion not supported for the False scenario
- driftreport postmunge metrics: none
- returned datatype: bnst returns string, bnso conditional integer per downstream ordinal encoding
- inversion available: supported for upstreaminteger True scenario, False performs a passthrough inversion without recovery
* GPS1: for converting sets of GPS coordinates to normalized latitude and longitude, relies on comma separated inputs, with latitude/longitude reported as DDMM.... or DDDMM.... and direction as one of 'N'/'S' or 'E'/'W'. Note that with GPS data, depending on the application, there may be benefit to setting the automunge(.) floatprecision parameter to 64 instead of the default 32. If you want to apply ML infill or some other assigninfill on the returned sets, we recommend ensuring missing data is received as NaN, otherwise missing entries will receive adjinfill.
- useful for: converting GPS coordinates to normalized latitude and normalized longitude
- default infill: adjinfill
- default NArowtype: justNaN
- suffix appender: \_GPS1\_latt\_mlti\_nmbr and \_GPS1\_long\_mlti\_nmbr
- assignparam parameters accepted:
- 'GPS_convention': accept one of {'default', 'nonunique'}, under default all rows are individually parsed. nonunique is used in GPS3 and GPS4.
- 'comma_addresses': accepts as list of 4 integers, defaulting to [2,3,4,5], which corresponds to default where latitude located after comma 2, latitude direction after comma 3, longitude after comma 4, longitude direction after comma 5
- 'comma_count': an integer, defaulting to 14, used in inversion to pad out commas on the recovered data format
- driftreport postmunge metrics: metrics included with the downstream normalization transforms
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with partial recovery e.g. for default configuration recovers data in the form ",,DDMM.MMMMMMM,C,DDMM.MMMMMMM,C,,,,,,,,," (where C is the direction)
* GPS2: comparable to GPS1 but without the downstream normalization, so returns floats in units of arc minutes. (If you want missing data returned as NaN instead of adjinfill, can set process_dict entry NArowtype to 'exclude'.)
* GPS3: comparable to GPS1, including downstream normalization, but only unique entries are parsed instead of all rows. Parses unique entries in both the train and test set. This may benefit latency in cases of redundant entries.
* GPS4: comparable to GPS1, including downstream normalization, but only unique entries are parsed instead of all rows. Parses unique entries in the train set and relies on assumption that the set of unique entries in test set will be the same or a subset of the train set, which may benefit latency for this scenario.
* GPS5: comparable to GPS3 but performs a downstream ordinal encoding instead of normalization, as may be desired when treating a fixed range of GPS coordinates as a categoric feature, latitude and longitude encoded separately.
* GPS6: comparable to GPS3 but performs both a downstream ordinal encoding and a downstream normalization, such as to treat latitude and longitude both as categoric and continuous numeric features. This is probably a better default than GPS3 or GPS5 for fixed range of entries.
* NArw: produces a column of boolean integer identifiers for rows in the source
column with missing or improperly formatted values. Note that when NArw
is assigned in a family tree it bases NArowtype on the root category,
when NArw is passed as the root category it bases NArowtype on default.
- useful for: supplementing any transform with marker for missing entries. On by default by NArw_marker parameter
- default infill: not applicable
- default NArowtype: justNaN
- suffix appender: '_NArw' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: pct_NArw
- returned datatype: int8
- inversion available: no
* NAr2: produces a column of boolean identifiers for rows in the source
column with missing or improperly formatted values.
- useful for: similar to NArw but different default NArwtype for when used as a root category
- default infill: not applicable
- default NArowtype: numeric
- suffix appender: '_NAr2' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: pct_NArw
- returned datatype: int8
- inversion available: no
* NAr3: produces a column of boolean identifiers for rows in the source
column with missing or improperly formatted values.
- useful for: similar to NArw but different default NArwtype for when used as a root category
- default infill: not applicable
- default NArowtype: positivenumeric
- suffix appender: '_NAr3' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: pct_NArw
- returned datatype: int8
- inversion available: no
* NAr4: produces a column of boolean identifiers for rows in the source
column with missing or improperly formatted values.
- useful for: similar to NArw but different default NArwtype for when used as a root category
- default infill: not applicable
- default NArowtype: nonnegativenumeric
- suffix appender: '_NAr4' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: pct_NArw
- returned datatype: int8
- inversion available: no
* NAr5: produces a column of boolean identifiers for rows in the source
column with missing or improperly formatted values.
- useful for: similar to NArw but different default NArwtype for when used as a root category
- default infill: not applicable
- default NArowtype: integer
- suffix appender: '_NAr5' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: pct_NArw
- returned datatype: int8
- inversion available: no
* null: deletes source column
- default infill: none
- default NArowtype: exclude
- no suffix appender, column deleted
- assignparam parameters accepted: none
- driftreport postmunge metrics: none
- returned datatype: N/A
- inversion available: no
### Parsed Categoric Encodings
Please note I recommend caution on using splt/spl2/spl5/spl6 transforms on categorical
sets that may include scientific units for instance, as prefixes will not be noted
for overlaps, e.g. this wouldn't distinguish between kilometer and meter for instance.
Note that overlap lengths below 5 characters are ignored unless that value is overridden
by passing 'minsplit' parameter through assignparam. Further detail on parsed categoric
encodings provided in the essay [Parsed Categoric Encodings with Automunge](https://medium.com/automunge/string-theory-acbd208eb8ca).
* splt: searches categorical sets for overlaps between string character subsets and returns new boolean column
for identified overlap categories. Note this treats numeric values as strings e.g. 1.3 = '1.3'.
Note that priority is given to overlaps of higher length, and by default overlap go down to 5 character length.
- useful for: extracting grammatical structure shared between entries
- default infill: none
- default NArowtype: justNaN
- suffix appender: '\_splt\_##*##' where ##*## is target identified string overlap
- assignparam parameters accepted:
- 'minsplit': indicating lowest character length for recognized overlaps
- 'space_and_punctuation': True/False, defaults to True, when passed as
False character overlaps are not recorded which include space or punctuation
based on characters in excluded_characters parameter
- 'excluded_characters': a list of strings which are excluded from overlap
identification when space_and_punctuation set as False, defaults to
`[' ', ',', '.', '?', '!', '(', ')']`
- 'concurrent_activations': defaults as False, True makes comparable to sp15,
although recommend using sp15 instead for correct MLinfilltype
- 'suffix': returned column suffix appender, defaults to 'splt'
- 'int_headers': True/False, defaults as False, when True returned column headers
are encoded with integers, such as for privacy preserving of data contents
- 'test_same_as_train': defaults False, True makes this comparable to spl8
- driftreport postmunge metrics: overlap_dict / splt_newcolumns_splt / minsplit
- returned datatype: int8
- inversion available: yes with partial recovery
* sp15: similar to splt, but allows concurrent activations for multiple detected overlaps (spelled sp-fifteen)
Note that this version runs risk of high dimensionality of returned data in comparison to splt.
- useful for: extracting grammatical structure shared between entries with increased information retention vs splt
- default infill: none
- default NArowtype: justNaN
- suffix appender: '\_sp15\_##*##' where ##*## is target identified string overlap
- assignparam parameters accepted:
- comparable to splt, with concurrent_activations as True
- driftreport postmunge metrics: overlap_dict / splt_newcolumns_sp15 / minsplit
- returned datatype: int8
- inversion available: yes with partial recovery
* sp19: comparable to sp15, but with returned columns aggregated by a binary encoding to reduce dimensionality
- useful for: extracting grammatical structure shared between entries with decreased dimensionality vs sp15
- default infill: distinct encoding
- default NArowtype: justNaN
- suffix appender: '\_sp19\_#' where # is integer associated with the encoding
- assignparam parameters accepted: comparable to sp15
- driftreport postmunge metrics: comparable to sp15 with addition of _1010_activations_dict for activation ratios
- returned datatype: int8
- inversion available: yes with partial recovery
* sbst: similar to sp15, but only detects string overlaps shared between full unique entries and subsets of longer character length entries
- useful for: extracting cases of overlap between full entries and subsets of other entries
- default infill: none
- default NArowtype: justNaN
- suffix appender: '\_sbst\_##*##' where ##*## is target identified string overlap
- assignparam parameters accepted:
- 'int_headers': True/False, defaults as False, when True returned column headers
are encoded with integers, such as for privacy preserving of data contents
- 'minsplit': indicating lowest character length for recognized overlaps, defaults to 1
- 'concurrent_activations': True/False, defaults to True, when True
entries may have activations for multiple simultaneous overlaps
- 'test_same_as_train': defaults False, True makes this comparable to sbs2
- 'suffix': returned column suffix appender, defaults to 'sbst'
- driftreport postmunge metrics: overlap_dict / splt_newcolumns_sbst / minsplit
- returned datatype: int8
- inversion available: yes with partial recovery
* sbs3: comparable to sbst, but with returned columns aggregated by a binary encoding to reduce dimensionality
- useful for: binary version of sbst for reduced dimensionality
- default infill: distinct encoding
- default NArowtype: justNaN
- suffix appender: '\_sbs3\_#' where # is integer associated with the encoding
- assignparam parameters accepted: comparable to sbst
- driftreport postmunge metrics: comparable to sbst with addition of _1010_activations_dict for activation ratios
- returned datatype: int8
- inversion available: yes with partial recovery
* spl2/ors2/ors6/txt3: similar to splt, but instead of creating new column identifier it replaces categorical
entries with the abbreviated string overlap
- useful for: similar to splt but returns single column, used in aggregations like or19
- default infill: none
- default NArowtype: justNaN
- suffix appender: '_spl2' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'minsplit': indicating lowest character length for recognized overlaps
- 'space_and_punctuation': True/False, defaults to True, when passed as
False character overlaps are not recorded which include space or punctuation
based on characters in excluded_characters parameter
- 'excluded_characters': a list of strings which are excluded from overlap
identification when space_and_punctuation set as False, defaults to
`[' ', ',', '.', '?', '!', '(', ')']`
- 'test_same_as_train': defaults False, True makes this comparable to spl9
- 'suffix': returned column suffix appender, defaults to 'spl2'
- 'consolidate_nonoverlaps': defaults to False, True makes this comparable to spl5
- driftreport postmunge metrics: overlap_dict / spl2_newcolumns / spl2_overlap_dict / spl2_test_overlap_dict /
minsplit
- returned datatype: str (other categoric encodings can be returned downstream to return numeric)
- inversion available: yes with partial recovery
* spl5/ors5: similar to spl2, but those entries without identified string overlap are set to 0,
(used in ors5 in conjunction with ord3)
- useful for: final tier of spl2 aggregations such as in or19
- default infill: none
- default NArowtype: justNaN
- suffix appender: '_spl5' in base configuration or based on the family tree category
- assignparam parameters accepted:
- comparable to spl2, consolidate_nonoverlaps as True
- driftreport postmunge metrics: overlap_dict / spl2_newcolumns / spl2_overlap_dict / spl2_test_overlap_dict /
spl5_zero_dict / minsplit
- returned datatype: str (other categoric encodings can be returned downstream to return numeric)
- inversion available: yes with partial recovery
* spl6: similar to spl5, but with a splt performed downstream for identification of overlaps
within the overlaps
- useful for: just a variation on parsing aggregations
- default infill: none
- default NArowtype: justNaN
- suffix appender: '_spl6' in base configuration or based on the family tree category
- assignparam parameters accepted:
- comparable to spl2
- driftreport postmunge metrics: overlap_dict / spl2_newcolumns / spl2_overlap_dict / spl2_test_overlap_dict /
spl5_zero_dict / minsplit
- returned datatype: int8
- inversion available: yes with partial recovery
* spl7: similar to spl5, but recognizes string character overlaps down to minimum 2 instead of 5
- useful for: just a variation on parsing aggregations
- default infill: none
- default NArowtype: justNaN
- suffix appender: '_spl7' in base configuration or based on the family tree category
- assignparam parameters accepted:
- comparable to spl5, minsplit defaults to 2
- driftreport postmunge metrics: overlap_dict / srch_newcolumns_srch / search
- returned datatype: int8
- inversion available: yes with partial recovery
* srch: searches categorical sets for overlaps with user passed search string and returns new boolean column
for identified overlap entries.
- useful for: identifying specific entry character subsets by search
- default infill: none
- default NArowtype: justNaN
- suffix appender: '\_srch\_##*##' where ##*## is target identified search string
- assignparam parameters accepted:
- 'search': a list of strings, defaults as empty set
(note search parameter list can included embedded lists of terms for
aggregated activations of terms in the sub-list)
- 'case': bool to indicate case sensitivity of search, defaults True
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: overlap_dict / splt_newcolumns_splt / minsplit
- returned datatype: int8
- inversion available: yes with partial recovery
* src2: comparable to srch but expected to be more efficient when target set has narrow range of entries
- useful for: similar to srch slight variation on implementation
- default infill: none
- default NArowtype: justNaN
- suffix appender: '\_src2_##*##' where ##*## is target identified search string
- assignparam parameters accepted:
- 'search': a list of strings, defaults as empty set
(note search parameter list can included embedded lists of terms for
aggregated activations of terms in the sub-list)
- 'case': bool to indicate case sensitivity of search, defaults True
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: overlap_dict / splt_newcolumns_splt / minsplit
- returned datatype: int8
- inversion available: yes with partial recovery
* src3: comparable to src2 with additional support for test set entries not found in train set
* src4: searches categorical sets for overlaps with user passed search string and returns ordinal column
for identified overlap entries. (Note for multiple activations encoding priority given to end of list entries).
- useful for: ordinal version of srch
- default infill: none
- default NArowtype: justNaN
- suffix appender: '\_src4' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'search': a list of strings, defaults as empty set
(note search parameter list can included embedded lists of terms for
aggregated activations of terms in the sub-list)
- 'case': bool to indicate case sensitivity of search, defaults True
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: overlap_dict / splt_newcolumns_splt / minsplit
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: yes with partial recovery
* nmrc/nmr2/nmr3: parses strings and returns any number groupings, prioritized by longest length
- useful for: extracting numeric character subsets of entries
- default infill: mean
- default NArowtype: parsenumeric
- suffix appender: '_nmrc' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: overlap_dict / mean / maximum / minimum
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* nmcm/nmc2/nmc3: similar to nmrc, but recognizes numbers with commas, returns numbers stripped of commas
- useful for: extracting numeric character subsets of entries, recognizes commas
- default infill: mean
- default NArowtype: parsenumeric
- suffix appender: '_nmcm' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: overlap_dict / mean / maximum / minimum
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* nmEU/nmE2/nmE3: similar to nmcm, but recognizes numbers with period or space thousands delimiter and comma decimal
- useful for: extracting numeric character subsets of entries, recognizes EU format
- default infill: mean
- default NArowtype: parsenumeric
- suffix appender: '_nmEU' in base configuration or based on the family tree category
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: overlap_dict / mean / maximum / minimum
- returned datatype: based on automunge(.) floatprecision parameter (defaults to float32)
- inversion available: yes with full recovery
* strn: parses strings and returns any non-number groupings, prioritized by longest length, followed by ord3 ordinal encoding
- useful for: extracting nonnumeric character subsets of entries
- default infill: naninfill
- default NArowtype: justNaN
- suffix appender: '_strn_ord3'
- assignparam parameters accepted:
- 'suffix': to change suffix appender (leading underscore added internally)
- driftreport postmunge metrics: overlap_dict
- returned datatype: conditional based on size of encoding space (uint8 / uint16 / uint32)
- inversion available: pending
### More Efficient Parsed Categoric Encodings
* new processing functions nmr4/nmr5/nmr6/nmc4/nmc5/nmc6/nmE4/nmE5/nmE6/spl8/spl9/sp10 (spelled sp"ten")/sp16/src2/sbs2/sp20/sbs4:
- comparable to functions nmrc/nmr2/nmr3/nmcm/nmc2/nmc3/nmEU/nmE2/nmE3/splt/spl2/spl5/sp15/srch/sbst/sp19/sbs3
- but make use of new assumption that set of unique values in test set is same or a subset of those values
from the train set, which allows for a more efficient application (no more string parsing of test sets)
- default infill: comparable
- default NArowtype: comparable
- suffix appender: same format, updated per the new category
- assignparam parameters accepted: comparable
- driftreport postmunge metrics: comparable
- returned datatype: comparable
- inversion available: yes
* new processing functions nmr7/nmr8/nmr9/nmc7/nmc8/nmc9/nmE7/nmE8/nmE9:
- comparable to functions nmrc/nmr2/nmr3/nmcm/nmc2/nmc3/nmEU/nmE2/nmE3
- but implements string parsing only for unique test set entries not found in train set
- for more efficient test set processing in automunge and postmunge
- (less efficient than nmr4/nmc4 etc but captures outlier points as may not be unusual in continuous distributions)
- default infill: comparable
- default NArowtype: comparable
- suffix appender: same format, updated per the new category
- assignparam parameters accepted: comparable
- driftreport postmunge metrics: overlap_dict / mean / maximum / minimum / unique_list / maxlength
- returned datatype: comparable
- inversion available: no
### Multi-tier Parsed Categoric Encodings
The following are a few variations of parsed categoric encoding aggregations. We recommend the or19 variant and
have written about in paper [Parsed Categoric Encodings with Automunge](https://medium.com/automunge/string-theory-acbd208eb8ca).
* new processing root categories or11 / or12 / or13 / or14 / or15 / or16 / or17 / or18 / or19 / or20
- or11 / or13 intended for categorical sets that may include multiple tiers of overlaps
and include base binary encoding via 1010 supplemented by tiers of string parsing for
overlaps using spl2 and spl5, or11 has two tiers of overlap string parsing, or13 has three,
each parsing returned with an ordinal encoding sorted by frequency (ord3)
- or12 / or14 are comparable to or11 / or13 but include an additional supplemental
transform of string parsing for numerical entries with nmrc followed by a z-score normalization
of returned numbers via nmbr
- or15 / or16 / or17 / or18 comparable to or11 / or12 / or13 / or14 but incorporate an
UPCS transform upstream and make use of spl9/sp10 instead of spl2/spl5 for assumption that
set of unique values in test set is same or subset of train set for more efficient postmunge
- or19 / or20 comparable to or16 / or18 but replace the 'nmrc' string parsing for numeric entries
with nmc8 which allows comma characters in numbers and makes use of consistent assumption to
spl9/sp10 that set of unique values in test set is same or subset of train for efficient postmunge
- or21 / or22 comparable to or19 / or20 but use spl2/spl5 instead of spl9/sp10,
which allows string parsing to handle test set entries not found in the train set
- or23 similar to or19 but instead of spl2/spl5 chain applies a sp19 for binary encoded string parsing with concurrent activations
- assignparam parameters accepted: 'minsplit': indicating lowest character length for recognized overlaps
(note that parameter has to be assigned to specific categories such as spl2/spl5 etc), also other parameters
associated with constituent functions
- driftreport postmunge metrics: comparable to constituent functions
- inversion available: yes with full recovery
___
### List of Root Categories
Here are those root categories presented again in a concise sorted list, intended as reference so user can
avoid unintentional duplication.
- '1010',
- '101d',
- '10mz',
- 'DB10',
- 'DB1s',
- 'DBb2',
- 'DBbn',
- 'DBbx',
- 'DBh1',
- 'DBh2',
- 'DBhs',
- 'DBm2',
- 'DBmc',
- 'DBmm',
- 'DBmp',
- 'DBn2',
- 'DBn3',
- 'DBn4',
- 'DBnb',
- 'DBne',
- 'DBnm',
- 'DBns',
- 'DBo4',
- 'DBo5',
- 'DBo6',
- 'DBo7',
- 'DBo8',
- 'DBod',
- 'DBoh',
- 'DBqt',
- 'DBrt',
- 'DBse',
- 'DBsk',
- 'DLmm',
- 'DLnb',
- 'DLrt',
- 'DP10',
- 'DP1s',
- 'DPb2',
- 'DPbn',
- 'DPbx',
- 'DPh1',
- 'DPh2',
- 'DPhs',
- 'DPm2',
- 'DPmc',
- 'DPmm',
- 'DPmp',
- 'DPn2',
- 'DPn3',
- 'DPn4',
- 'DPnb',
- 'DPne',
- 'DPnm',
- 'DPns',
- 'DPo4',
- 'DPo5',
- 'DPo6',
- 'DPo7',
- 'DPo8',
- 'DPod',
- 'DPoh',
- 'DPpc',
- 'DPqt',
- 'DPrt',
- 'DPse',
- 'DPsk',
- 'DT10',
- 'DT1s',
- 'DTb2',
- 'DTbn',
- 'DTbx',
- 'DTh1',
- 'DTh2',
- 'DThs',
- 'DTm2',
- 'DTmc',
- 'DTmm',
- 'DTmp',
- 'DTn2',
- 'DTn3',
- 'DTn4',
- 'DTnb',
- 'DTne',
- 'DTnm',
- 'DTns',
- 'DTo4',
- 'DTo5',
- 'DTo6',
- 'DTo7',
- 'DTo8',
- 'DTod',
- 'DToh',
- 'DTqt',
- 'DTrt',
- 'DTse',
- 'DTsk',
- 'GPS1',
- 'GPS2',
- 'GPS3',
- 'GPS4',
- 'GPS5',
- 'GPS6',
- 'MAD2',
- 'MAD3',
- 'MADn',
- 'NAr2',
- 'NAr3',
- 'NAr4',
- 'NAr5',
- 'NArw',
- 'U101',
- 'Ucct',
- 'Uh10',
- 'Uhs2',
- 'Uhsh',
- 'UPCS',
- 'Unht',
- 'Uor2',
- 'Uor3',
- 'Uor6',
- 'Uord',
- 'Utx2',
- 'Utx3',
- 'Utxt',
- 'absl',
- 'addd',
- 'aggt',
- 'arcs',
- 'arsn',
- 'artn',
- 'bins',
- 'bkb3',
- 'bkb4',
- 'bkt1',
- 'bkt2',
- 'bkt3',
- 'bkt4',
- 'bn7b',
- 'bn7o',
- 'bn9b',
- 'bn9o',
- 'bnKo',
- 'bnMo',
- 'bne7',
- 'bne9',
- 'bneb',
- 'bneo',
- 'bnep',
- 'bnKb',
- 'bnMb',
- 'bnr2',
- 'bnrd',
- 'bnry',
- 'bnso',
- 'bnst',
- 'bnwb',
- 'bnwK',
- 'bnwM',
- 'bnwd',
- 'bnwo',
- 'bsbn',
- 'bshr',
- 'bsor',
- 'bxc2',
- 'bxc3',
- 'bxc4',
- 'bxc5',
- 'bxc6',
- 'bxc7',
- 'bxcx',
- 'cnsl',
- 'cns2',
- 'cns3',
- 'copy',
- 'cost',
- 'd2d2',
- 'd2dt',
- 'd3d2',
- 'd3dt',
- 'd4d2',
- 'd4dt',
- 'd5d2',
- 'd5dt',
- 'd6d2',
- 'd6dt',
- 'dat2',
- 'dat3',
- 'dat4',
- 'dat5',
- 'dat6',
- 'datd',
- 'date',
- 'day2',
- 'day3',
- 'day4',
- 'day5',
- 'days',
- 'ddd2',
- 'ddd3',
- 'ddd4',
- 'ddd5',
- 'ddd6',
- 'dddt',
- 'ded2',
- 'ded3',
- 'ded4',
- 'ded5',
- 'ded6',
- 'dedt',
- 'dhmc',
- 'dhms',
- 'divd',
- 'dxd2',
- 'dxdt',
- 'dycs',
- 'dysn',
- 'exc2',
- 'exc3',
- 'exc4',
- 'exc5',
- 'exc6',
- 'exc7',
- 'exc8',
- 'exc9',
- 'excl',
- 'fsmh',
- 'hash',
- 'hldy',
- 'hmsc',
- 'hmss',
- 'hour',
- 'hrcs',
- 'hrs2',
- 'hrs3',
- 'hrs4',
- 'hrsn',
- 'hs10',
- 'hsh2',
- 'lb10',
- 'lbbn',
- 'lbda',
- 'lbfs',
- 'lbnm',
- 'lbo5',
- 'lbor',
- 'lbos',
- 'lbsm',
- 'lbte',
- 'lgn2',
- 'lgnm',
- 'lgnr',
- 'lngt',
- 'lngm',
- 'lnlg',
- 'log0',
- 'log1',
- 'logn',
- 'ma10',
- 'matx',
- 'maxb',
- 'mdcs',
- 'mdsn',
- 'mea2',
- 'mea3',
- 'mean',
- 'mics',
- 'min2',
- 'min3',
- 'min4',
- 'mint',
- 'misn',
- 'mlhs',
- 'mltG',
- 'mlti',
- 'mlto',
- 'mltp',
- 'mmd2',
- 'mmd3',
- 'mmd4',
- 'mmd5',
- 'mmd6',
- 'mmdx',
- 'mmor',
- 'mmq2',
- 'mmqb',
- 'mncs',
- 'mnm2',
- 'mnm3',
- 'mnm4',
- 'mnm5',
- 'mnm6',
- 'mnm7',
- 'mnmx',
- 'mnsn',
- 'mnt2',
- 'mnt3',
- 'mnt4',
- 'mnt5',
- 'mnt6',
- 'mnth',
- 'mnto',
- 'mnts',
- 'mscs',
- 'mssn',
- 'mxab',
- 'nbr2',
- 'nbr3',
- 'nbr4',
- 'nmbd',
- 'nmbr',
- 'nmc2',
- 'nmc3',
- 'nmc4',
- 'nmc5',
- 'nmc6',
- 'nmc7',
- 'nmc8',
- 'nmc9',
- 'nmcm',
- 'nmd2',
- 'nmd3',
- 'nmd4',
- 'nmd5',
- 'nmd6',
- 'nmdx',
- 'nmE2',
- 'nmE3',
- 'nmE4',
- 'nmE5',
- 'nmE6',
- 'nmE7',
- 'nmE8',
- 'nmE9',
- 'nmEU',
- 'nmq2',
- 'nmqb',
- 'nmr2',
- 'nmr3',
- 'nmr4',
- 'nmr5',
- 'nmr6',
- 'nmr7',
- 'nmr8',
- 'nmr9',
- 'nmrc',
- 'ntg2',
- 'ntg3',
- 'ntgr',
- 'nuld',
- 'null',
- 'om10',
- 'onht',
- 'or10',
- 'or11',
- 'or12',
- 'or13',
- 'or14',
- 'or15',
- 'or16',
- 'or17',
- 'or18',
- 'or19',
- 'or20',
- 'or21',
- 'or22',
- 'or23',
- 'or3b',
- 'or3c',
- 'or3d',
- 'ord2',
- 'ord3',
- 'ord4',
- 'ord5',
- 'ordd',
- 'ordl',
- 'ors2',
- 'ors5',
- 'ors6',
- 'ors7',
- 'por2',
- 'por3',
- 'pwbn',
- 'pwor',
- 'pwr2',
- 'pwrs',
- 'qbt1',
- 'qbt2',
- 'qbt3',
- 'qbt4',
- 'qbt5',
- 'qtt1',
- 'qttf',
- 'qtt2',
- 'rais',
- 'retn',
- 'rtb2',
- 'rtbn',
- 'sbs2',
- 'sbs3',
- 'sbs4',
- 'sbst',
- 'sbtr',
- 'sccs',
- 'scn2',
- 'scnd',
- 'scsn',
- 'sgn1',
- 'sgn2',
- 'sgn3',
- 'sgn4',
- 'shf2',
- 'shf3',
- 'shf4',
- 'shf5',
- 'shf6',
- 'shf7',
- 'shf8',
- 'shfl',
- 'shft',
- 'sint',
- 'smth',
- 'sp10',
- 'sp11',
- 'sp12',
- 'sp13',
- 'sp14',
- 'sp15',
- 'sp16',
- 'sp17',
- 'sp18',
- 'sp19',
- 'sp20',
- 'spl2',
- 'spl5',
- 'spl6',
- 'spl7',
- 'spl8',
- 'spl9',
- 'splt',
- 'sqrt',
- 'src2',
- 'src3',
- 'src4',
- 'srch',
- 'strn',
- 'strg',
- 'tant',
- 'texd',
- 'text',
- 'tlbn',
- 'tmzn',
- 'txt2',
- 'txt3',
- 'ucct',
- 'wkdo',
- 'wkds',
- 'wkdy',
- 'yea2',
- 'year'
___
### List of Suffix Appenders
The convention is that each transform returns a derived column or set of columns which are distinguished
from the source column by suffix appenders to the header strings. Note that in cases of root categories
whose family trees include multiple generations, there may be multiple inclusions of different suffix
appenders in a single returned column. A list of included suffix appenders would be too long to include here
since every transformation category serves as a distinct suffix appender. Note that
the transformation functions test for suffix overlap error from creating new column with headers already
present in dataframe and return results in final printouts and postprocess_dict['miscparameters_results']['suffixoverlap_results'].
(Or for comparable validation results for PCA, Binary, and excl transforms see 'PCA_suffixoverlap_results',
'Binary_suffixoverlap_results', 'excl_suffixoverlap_results'.)
___
### Other Reserved Strings
Note that as Automunge applies transformations, new column headers are derived with addition of suffix appenders with leading underscore. There is an edge case where a new column header may be derived matching one already found in the set, which would be a channel for error. All new header configurations are validated for this overlap channel and if found, reported in final printouts and aggregated in the validation result postprocess_dict['miscparameters_results']['suffixoverlap_aggregated_result']. To eliminate risk of column header overlap edge cases, one can pass column headers in df_train that omit the underscore character '\_' or otherwise inspect this validation result upon automunge(.) completion.
- 'Binary__1010_#' / 'Binary__ord3': The columns returned from Binary transform have headers per one of these conventions. Note that if this header is already present in the data, it will instead populate as 'Binary_############_1010_#' / 'Binary_############_ord3' which includes the 12 digit random integer associated with the application number and this adjustment will be reported with validation results.
- 'PCA__#': The columns returned from PCA dimensionality reduction have headers per this convention. Note that if this header is already present in the data, it will instead populate as 'PCA_############_#' which includes the 12 digit random integer associated with the application number and this adjustment will be reported with validation results.
- 'Automunge_index': a reserved column header for index columns returned in ID sets. When automunge(.) is run the returned ID sets are
populated with an index matching order of rows from original returned set, note that if this header is already present in the ID sets
it will instead populate as 'Automunge_index_' + a 12 digit random integer associated with the application number and will be reported with validation results.
Note that results of various validation checks such as for column header overlaps and other potential bugs are returned from
automunge(.) in closing printouts and in the postprocess_dict as postprocess_dict['miscparameters_results'], and returned
from postmunge(.) in the postreports_dict as postreports_dict['pm_miscparameters_results']. (If the function fails to compile
check the printouts.) It is not a requirement, but we also recommend omitting underscore characters in strings used for
transformation category identifiers for interpretation purposes.
___
### Root Category Family Tree Definitions
The family tree definitions reference documentation are now recorded in a separate file in the github repo titled "FamilyTrees.md".
___
## Custom Transformation Functions
Ok another item on the agenda, we're going to demonstrate methods to create custom
transformation functions, such that a user may customize the feature engineering
while building on all of the extremely useful built in features of automunge such
as infill methods including ML infill, feature importance, dimensionality reduction,
preparation for class imbalance oversampling, and perhaps most importantly the
simplest possible way for consistent processing of additional data with just a single
function call. The transformation functions will need to be channeled through pandas
and incorporate a handful of simple data structures, which we'll demonstrate below.
To give a simple example, we'll demonstrate defining a custom transformation for
z-score normalization, with an added parameter of a user configurable multiplier to
demonstrate how we can access parameters passed through assignparam. We'll associate
the transform with a new category we'll call 'newt' which we'll define with entries
passed in the transformdict and processdict data structures.
Let's create a really simple family tree for the new root category 'newt' which
simply creates a column identifying any rows subject to infill (NArw), performs
the z-score normalization we'll define below, and separately aggregates a collection
of standard deviation bins with the 'bins' transform.
```
transformdict = {'newt' : {'parents' : [],
'siblings' : [],
'auntsuncles' : ['newt', 'bins'],
'cousins' : ['NArw'],
'children' : [],
'niecesnephews' : [],
'coworkers' : [],
'friends' : []}}
```
Note that since this newt requires passing normalization parameters derived
from the train set to process the test set, we'll need to create two separate
transformation functions, the first a "custom_train" function that processes
the train set and records normalization parameters, and the second
a "custom_test" that only processes the test set on its own using the parameters
derived during custom_train. (Note that if we don't need properties from the
train set to process the test set we would only need to define a custom_train.)
So what's being demonstrated here is that we're populating a processdict entry
which will pass the custom transformation functions that we'll define below
to associate them with the category for use when that category is entered in one
of the family tree primitives associated with a root category. Note that the entries
for custom_test and custom_inversion are both optional, and info_retention is associated
with the inversion.
```
processdict = {'newt' : {'custom_train' : custom_train_template,
'custom_test' : custom_test_template,
'custom_inversion' : custom_inversion_template,
'info_retention' : True,
'NArowtype' : 'numeric',
'MLinfilltype' : 'numeric'}}
```
Note that for the processdict entry key, shown here as 'newt', the convention in library
is that this key serves as the default suffix appender for columns returned from
the transform unless otherwise specified in assignparam.
Note that for transforms in the custom_train convention, an initial infill is automatically
applied as adjacent cell infill to serve as precursor to ML infill. A user may also specify
by a 'defaultinfill' processdict entry other conventions for this initial infill associated
with the transformation category, as one of {'adjinfill', 'meaninfill', 'medianinfill',
'modeinfill', 'interpinfill', 'lcinfill', 'zeroinfill', 'oneinfill', 'naninfill', 'negzeroinfill'}. naninfill may be suitable
when a custom infill is applied as part of the custom transform. If naninfill retention is
desired for the returned data, either it may be assigned in assigninfill, or the 'NArowtype'
processdict entry can be cast as 'exclude', noting that the latter may interfere with ML infill
unless the feature is excluded from ML infill bases through ML_cmnd['full_exclude'].
Note that for transforms in the custom_train convention, after the transformation function
is applied, a data type casting is performed based on the MLinfilltype
unless deactivated with a dtype_convert processdict entry.
Now we have to define the custom processing functions which we are passing through
the processdict to automunge.
Here we'll define a "custom_train" function intended to process a train set and
derive any properties need to process test data, which will be returned in a dictionary
we'll refer to as the normalization_dict. Note that the normalization_dict can also
be used to store any drift statistics we want to collect for a postmunge driftreport.
The test data can then be prepared with the custom_test we'll demonstrate next
(unless custom_test is omitted in the processdict in which case test data
will be prepared with the same custom_train function).
Now we'll define the function. (Note that if defining for the internal library
an additional self parameter required as first argument.) Note that pandas is available
as pd and numpy as np.
```
def custom_train_template(df, column, normalization_dict):
"""
#Template for a custom_train transformation function to be applied to a train feature set.
#Where if a custom_test entry is not defined then custom_train will be applied to any
#corresponding test feature sets as well (as may be ok when processing the feature in df_test
#doesn't require accessing any train data properties from the normalization_dict).
#Receives a df as a pandas dataframe
#Where df will generally be from df_train (or may also be from df_test when custom_test not specified)
#column is the target column of transform
#which will already have the suffix appender incorporated when this is applied
#normalization_dict is a dictionary pre-populated with any parameters passed in assignparam
#(and also parameters designated in any defaultparams for the associated processdict entry)
#returns the resulting transformed dataframe as df
#returns normalization_dict, which is a dictionary for storing properties derived from train data
#that may then be accessed to consistently transform test data
#note that any desired drift statistics can also be stored in normalization_dict
#e.g. normalization_dict.update({'property' : property})
#(automunge(.) may externally consider normalization_dict keys of 'inplace' or 'newcolumns_list')
#note that prior to this function call
#a datatype casting based on the NArowtype processdict entry may have been performed
#as well as a default infill of adjinfill
#unless infill type otherwise specified in a defaultinfill processdict entry
#note that this default infill is a precursor to ML infill
#note that if this same custom_train is to be applied to both train and test data
#(when custom_test not defined) then the quantity, headers, and order of returned columns
#will need to be consistent independent of data properties
#Note that the assumptions for data type of received data
#Should align with the NArowtype specified in processdict
#Note that the data types and quantity of returned columns
#Will need to align with the MLinfilltype specified in processdict
#note that following this function call a dtype conversion will take place based on MLinfilltype
#unless deactivated with a dtype_convert processdict entry
"""
#As an example, here is the application of z-score normalization
#derived based on the training set mean and standard deviation
#which can accept any kind of numeric data
#so corresponding NArowtype processdict entry can be 'numeric'
#and returns a single column of continuous numeric data
#so corresponding MLinfilltype processdict entry will need to be 'numeric'
#where we'll include the option for a parameter 'multiplier'
#which is an arbitrary example to demonstrate accessing parameters
#basically we check if that parameter had been passed in assignparam or defaultparams
if 'multiplier' in normalization_dict:
multiplier = normalization_dict['multiplier']
#or otherwise assign and save a default value
else:
multiplier = 1
normalization_dict.update({'multiplier' : multiplier})
#Now we measure any properties of the train data used for the transformation
mean = df[column].mean()
stdev = df[column].std()
#It's good practice to ensure numbers used in derivation haven't been derived as nan
#or would result in dividing by zero
if mean != mean:
mean = 0
if stdev != stdev or stdev == 0:
stdev = 1
#In general if that same basis will be needed to process test data we'll store in normalization_dict
normalization_dict.update({'mean' : mean,
'stdev': stdev})
#Optionally we can measure additional drift stats for a postmunge driftreport
#we will also save those in the normalization_dict
minimum = df[column].min()
maximum = df[column].max()
normalization_dict.update({'minimum' : minimum,
'maximum' : maximum})
#Now we can apply the transformation
#The generic formula for z-score normalization is (x - mean) / stdev
#here we incorporate an additional variable as the multiplier parameter (defaults to 1)
df[column] = (df[column] - mean) * multiplier / stdev
#A few clarifications on column management for reference:
#Note that it is ok to return multiple columns
#we recommend naming additional columns as a function of the received column header
#e.g. newcolumn = column + '_' + str(int)
#returned column headers should be strings
#when columns are conditionally created as a function of data properties
#will need to save headers for reference in custom_test
# e.g. normalization_dict.update('newcolumns_list' : [newcolumn]}
#Note that it is ok to delete the received column from dataframe as part of transform if desired
#If any other temporary columns were created as part of transform that aren't returned
#their column headers should be logged as a normalization_dict entry under 'tempcolumns'
# e.g. normalization_dict.update('tempcolumns' : [tempcolumn]}
#we recommend naming non-returned temporary columns with integer headers since other headers will be strings
return df, normalization_dict
```
And then since this is a method that passes values between the train
and test sets, we'll need to define a corresponding "custom_test" function
intended for use on test data.
```
def custom_test_template(df, column, normalization_dict):
"""
#This transform will be applied to a test data feature set
#on a basis of a corresponding custom_train entry
#Such as test data passed to either automunge(.) or postmunge(.)
#Using properties from the train set basis stored in the normalization_dict
#Note that when a custom_test entry is not defined,
#The custom_train entry will instead be applied to both train and test data
#Receives df as a pandas dataframe of test data
#and a string column header (column)
#which will correspond to the column (with suffix appender already included)
#that was passed to custom_train
#Also receives a normalization_dict dictionary
#Which will be the dictionary populated in and returned from custom_train
#note that prior to this function call
#a datatype casting based on the NArowtype processdict entry may have been performed
#as well as a default infill of adjinfill
#unless infill type otherwise specified in a defaultinfill processdict entry
#where convention is that the quantity, headers, and order of returned columns
#will need to match those returned from the corresponding custom_train
"""
#As an example, here is the corresponding z-score normalization
#derived based on the training set mean and standard deviation
#which was populated in a normalization_dict in the custom_train example given above
#Basically the workflow is we access any values needed from the normalization_dict
#apply the transform
#and return the transformed dataframe
#access the train set properties from normalization_dict
mean = normalization_dict['mean']
stdev = normalization_dict['stdev']
multiplier = normalization_dict['multiplier']
#then apply the transformation and return the dataframe
df[column] = (df[column] - mean) * multiplier / stdev
return df
```
And finally here is an example of the convention for inverseprocess functions,
such as may be passed to a processdict entry to support an inversion operation
on a custom transformation function (associated with postmunge(.) inversion parameter).
```
def custom_inversion_template(df, returnedcolumn_list, inputcolumn, normalization_dict):
"""
#User also has the option to define a custom inversion function
#Corresponding to custom_train and custom_test
#Where the function receives a dataframe df
#Containing a post-transform configuration of one or more columns whose headers are
#recorded in returnedcolumn_list
#And this function is for purposes of creating a new column with header inputcolumn
#Which inverts that transformation originally applied to produce those
#columns in returnedcolumn_list
#Here normalization_dict is the same as populated and returned from a corresponding custom_train
#as applied to the train set
#Returns the transformed dataframe df with the addition of a new column as df[inputcolumn]
#Note that the returned dataframe should retain the columns in returnedcolumn_list
#Whose retention will be managed elsewhere
"""
#As an example, here we'll be inverting the z-score normalization
#derived based on the training set mean and standard deviation
#which corresponds to the examples given above
#Basically the workflow is we access any values needed from the normalization_dict
#Initialize the new column inputcolumn
#And use values in the set from returnedcolumn_list to recover values for inputcolumn
#First let's access the values we'll need from the normalization_dict
mean = normalization_dict['mean']
stdev = normalization_dict['stdev']
multiplier = normalization_dict['multiplier']
#Now initialize the inputcolumn
df[inputcolumn] = 0
#So for the example of z-score normalization, we know returnedcolumn_list will only have one entry
#In some other cases transforms may have returned multiple columns
returnedcolumn = returnedcolumn_list[0]
#now we perform the inversion
df[inputcolumn] = (df[returnedcolumn] * stdev / multiplier) + mean
return df
```
Please note that if you included externally initialized functions in an automunge(.) call,
like for custom_train transformation functions, they will need
to be reinitialized by user prior to uploading an externally saved postprocess_dict with pickle
in a new notebook. (This was a design decision for security considerations.) Please note that
if you assign a multicolumn input feature set to a single root category with tree categories in
custom_train convention by assigncat {set} bracket specification e.g. assigncat = {'newt':[{'column1', 'column2'}]} then your custom_train transform will recieve those headers as a list through normalization_dict['messy_data_headers'].
Further details on custom transformations provided in the essay [Custom Transformations with Automunge](https://medium.com/automunge/custom-transformations-with-automunge-ae694c635a7e).
___
## Custom ML Infill Functions
Ok final item on the agenda, we're going to demonstrate methods to create custom
ML infill functions for model training and inference, such that a user may integrate their
own machine learning algorithms into the platform. We have tried to balance our options
for alternate learning libraries from the default random forest, but recognize that
sophisticate hyperparameter tuning is not our forte, so want to leave the option
open for users to integrate their own implementations, such as may be for example built on
top of XGBoost or other learning libraries.
We'll demonstrate here templates for defining training and inference functions for
classification and regression. These functions can be initialized externally and
applied for ML infill and feature importance. Please note that if you included externally
initialized functions in an automunge(.) call, like for customML inference functions
(but not customML training functions), they will need to be reinitialized by user prior to
uploading an externally saved postprocess_dict with pickle in a new notebook. These demonstrations
are shown with scikit Random Forest models for simplicity. Further details on Custom ML is
provided in the essay [Custom ML Infill with Automunge](https://medium.com/automunge/custom-ml-infill-with-automunge-5b31d7cfd4d2).
```
def customML_train_classifier(labels, features, columntype_report, commands, randomseed):
"""
#Template for integrating user defined ML classificaiton training into ML infill
#labels for classification are received as a single column pandas series with header of integer 1
#and entries of str(int) type (i.e. string representations of non-negative integers like '0', '1')
#if user prefers numeric labels, they can apply labels = labels.astype(int)
#features is received as a numerically encoded pandas dataframe
#with categoric entries as boolean integer or ordinal integer
#and may include binarized features
#headers are strings matching the returned convention with suffix appenders
#columntype_report is a dictionary reporting properties of the columns found in features
#a list of categoric features is available as columntype_report['all_categoric']
#a list of of numeric features is available as columntype_report['all_numeric']
#and columntype_report also contains more granular information such as feature set groupings and types
#consistent with the form returned in postprocess_dict['columntype_report']
#commands is received per user specification passed to automunge(.)
#in ML_cmnd['MLinfill_cmnd']['customML_Classifier']
#such as could be a dictionary populated as {'parameter' : value}
#and then could be passed to model training as **commands
#this is the same dictionary received for the corresponding predict function
#so if user intends to pass different commands to both operations they could structure as e.g.
#{'train' : {'parameter1' : value1}, 'predict' : {'parameter2' : value2}}
#and then pass to model training as **commands['train']
#randomseed is received as a randomly sampled integer
#the returned model is saved in postprocess_dict
#and accessed to impute missing data in automunge and again in postmunge
#as channeled through the corresponding customML_predict_classifier
#if model training not successful user can return model as False
#if the function returns a ValueError model will automatically populate as False
"""
model = RandomForestClassifier(**commands)
#labels are received as str(int), for this demonstration will convert to integer
labels = labels.astype(int)
model.fit(features, labels)
return model
def customML_train_regressor(labels, features, columntype_report, commands, randomseed):
"""
#Template for integrating user defined ML regression training into ML infill
#labels for regression are received as a single column pandas series with header of integer 0
#and entries of float type
#commands is received per user specification passed to automunge(.)
#in ML_cmnd['MLinfill_cmnd']['customML_Regressor']
#features, columntype_report, randomseed
#are comparable in form to those documented for the classification template
#the returned model is saved in postprocess_dict
#and accessed to impute missing data in automunge and again in postmunge
#as channeled through the corresponding customML_predict_regressor
#if model training not successful user can return model as False
#Note that if user only wishes to define a single function
#they can use the labels header convention (0/1) to distinguish between
#whether data is served for classification or regression
"""
model = RandomForestRegressor(**commands)
model.fit(features, labels)
return model
def customML_predict_classifier(features, model, commands):
"""
#Template for integrating user defined ML classification inference into ML infill
#features is comparable in form to those features received in the corresponding training operation
#model is the model returned from the corresponding training operation
#commands is the same as received in the corresponding training operation
#infill should be returned as single column numpy array, pandas dataframe, or series (column header is ignored)
#returned infill entry types should either be str(int) or int
"""
infill = model.predict(features)
return infill
def customML_predict_regressor(features, model, commands):
"""
#Template for integrating user defined ML regression inference into ML infill
#features is comparable in form to those features received in the corresponding training operation
#model is the model returned from the corresponding training operation
#commands is the same as received in the corresponding training operation
#infill should be returned as single column numpy array, pandas dataframe, or series (column header is ignored)
#returned infill entry types should be floats or integers
"""
infill = model.predict(features)
return infill
```
Having defined our custom functions, we can then pass them to an automunge(.) call through the ML_cmnd parameter.
We can activate their use by setting ML_cmnd['autoML_type'] = 'customML'. We can pass parameters to our functions
through ML_cmnd['autoML_type']['MLinfill_cmnd']. And we can pass our defined functions through
ML_cmnd['autoML_type']['customML'].
```
ML_cmnd = {'autoML_type' : 'customML',
'MLinfill_cmnd' : {'customML_Classifier':{'parameter1' : value1},
'customML_Regressor' :{'parameter2' : value2}},
'customML' : {'customML_Classifier_train' : customML_train_classifier,
'customML_Classifier_predict': customML_predict_classifier,
'customML_Regressor_train' : customML_train_regressor,
'customML_Regressor_predict' : customML_predict_regressor}}
```
Please note that for customML autoML_type, feature importance in postmunge is performed with the default random forest. (This was a design decision that benefits privacy of custom model training when sharing postprocess_dict with third party, this way only customML inference needs to be re-initialized when uploading postprocess_dict in a separate notebook.)
Note that the library has an internal suite of inference functions for different ML libraries
that can optionally be used in place of a user defined customML inference function. These can
be activated by passing a string to entries for 'customML_Classifier_predict' or 'customML_Regressor_predict'
as one of {'tensorflow', 'xgboost', 'catboost', 'flaml', 'randomforest'}. Use of the
internally defined inference functions allows a user to upload a postprocess_dict in a separate notebook
without needing to first reinitialize the customML inference functions. For example, to apply a
default inference function for the XGBoost library could apply:
```
ML_cmnd = {'autoML_type' : 'customML',
'MLinfill_cmnd' : {'customML_Classifier':{'parameter1' : value1},
'customML_Regressor' :{'parameter2' : value2}},
'customML' : {'customML_Classifier_train' : customML_train_classifier,
'customML_Classifier_predict': 'xgboost',
'customML_Regressor_train' : customML_train_regressor,
'customML_Regressor_predict' : 'xgboost'}}
```
And thus ML infill can run with any tabular learning library or algorithm. BYOML.
___
## Final Model Training
* Please note that Automunge with 8.13 introduced what is currently an experimental implementation for final model training and inference. For example, they are well suited for training a final model in conjunction with our optuna_XG1 hyperparameter tuner using the same ML_cmnd API to select tuning options. Note that this option can apply a different model architecture or tuning options than those used for ML infill.
- automodel(.) accepts a training set and postprocess_dict as returned from automunge(.) to automatically train a model which is saved in the postprocess_dict
- autoinference(.) accepts a test set prepared in automunge(.) or postmunge(.) and a postprocess_dict which has been populated by automodel and returns the results of inference.
- Note that when a model from automodel(.) is populated in a postprocess_dict, then when additional test data is prepared with that postprocess_dict in postmunge(.), if the test set does not include label features, then autoinference will automatically be called within postmunge(.) with the results of inference returned in the returned labels set we call test_labels.
Here is an example of an automodel pipeline using gradient boosting with optuna tuning to train the final model and then running inference in postmunge:
```
#prepare data for ML
train, train_ID, labels, \
val, val_ID, val_labels, \
test, test_ID, test_labels, \
postprocess_dict = \
am.automunge(df_train,
labels_column = labels_column)
#Set final model XGBoost tuning parameters for Optuna Bayesian tuning
ML_cmnd = {'autoML_type' : 'xgboost',
# 'xgboost_gpu_id' : 0,
'hyperparam_tuner' : 'optuna_XG1',
'optuna_n_iter' : 1000,
'optuna_timeout' : 3600,
'optuna_kfolds' : 5,
'optuna_fasttune' : True,
'optuna_early_stop': 150,
'optuna_max_depth_tuning_stepsize' : 1,
}
#train final model with automodel which will be saved in postprocess_dict
postprocess_dict = \
am.automodel(train, labels, postprocess_dict,
ML_cmnd = ML_cmnd, encrypt_key = False,
printstatus = True, randomseed = False)
#optional: download postprocess_dict with pickle
#can either run inference to raw data in postmunge
#or directly to encoded data with autoinference
#here we demonstrate running inference on validation data with autoinference
#followed by running inference on raw test data with postmunge
#run inference on encoded data with autoinference, here shown on validation data
val_predictions = \
am.autoinference(val, postprocess_dict, encrypt_key = False,
printstatus = True, randomseed = False)
#run inference on raw test data with postmunge
#note predictions will be returned as test_labels
test, test_ID, test_labels, \
postreports_dict = \
am.postmunge(postprocess_dict, df_test)
#optionally can invert the encoded predictions back to original form of labels
df_invert, recovered_list, inversion_info_dict = \
am.postmunge(postprocess_dict, test_labels, inversion='labels')
```
We consider the final model functions automodel(.) and autoinference(.) in Beta.
___
## Conclusion
And there you have it; you now have all you need to prepare data for
machine learning with the Automunge platform. Feedback is welcome.
...
As a citation, please note that the Automunge package makes use of
the Pandas, Scikit-learn, SciPy stats, and NumPy libraries. In addition
to the default of Scikit-learn's Random Forest predictive models,
Automunge also has options for ML infill using the CatBoost, FLAML,
or XGboost libraries, and includes a hyperparameter tuning option by
the Optuna library.
Wes McKinney. Data Structures for Statistical Computing in Python,
Proceedings of the 9th Python in Science Conference, 51-56 (2010)
[publisher
link](http://conference.scipy.org/proceedings/scipy2010/mckinney.html)
Fabian Pedregosa, Gaël Varoquaux, Alexandre Gramfort, Vincent Michel,
Bertrand Thirion, Olivier Grisel, Mathieu Blondel, Peter Prettenhofer,
Ron Weiss, Vincent Dubourg, Jake Vanderplas, Alexandre Passos, David
Cournapeau, Matthieu Brucher, Matthieu Perrot, Édouard Duchesnay.
Scikit-learn: Machine Learning in Python, Journal of Machine Learning
Research, 12, 2825-2830 (2011) [publisher
link](http://jmlr.org/papers/v12/pedregosa11a.html)
Pauli Virtanen, Ralf Gommers, Travis E. Oliphant, Matt Haberland, Tyler
Reddy, David Cournapeau, Evgeni Burovski, Pearu Peterson, Warren
Weckesser, Jonathan Bright, St ́efan J. van der Walt, Matthew Brett,
Joshua Wilson, K. Jarrod Millman, Nikolay Mayorov, Andrew R. J. Nelson,
Eric Jones, Robert Kern, Eric Larson, CJ Carey, Ilhan Polat, Yu Feng,
Eric W. Moore, Jake Vand erPlas, Denis Laxalde, Josef Perktold, Robert
Cim- rman, Ian Henriksen, E. A. Quintero, Charles R Harris, Anne M.
Archibald, Antˆonio H. Ribeiro, Fabian Pedregosa, Paul van Mulbregt, and
SciPy 1. 0 Contributors. SciPy 1.0: Fundamental Algorithms for Scientific
Computing in Python. Nature Methods, 17:261– 272, 2020.
doi: https://doi.org/10.1038/s41592-019-0686-2.
S. van der Walt, S. Colbert, and G. Varoquaux. The numpy array: A
structure for efficient numerical computation. Computing in Science
& Engineering, 13:22–30, 2011.
Anna Veronika Dorogush, Vasily Ershov, Andrey Gulin. CatBoost: gradient
boosting with categorical features support [arXiv:1810.11363](https://arxiv.org/abs/1810.11363)
Chi Wang, Qingyun Wu, Markus Weimer, Erkang Zhu. FLAML: A Fast and Lightweight AutoML Library
[arXiv:1911.04706](https://arxiv.org/abs/1911.04706)
Tianqi Chen, Carlos Guestrin. XGBoost: A Scalable Tree Boosting System
[arXiv:1603.02754](https://arxiv.org/abs/1603.02754)
Takuya Akiba, Shotaro Sano, Toshihiko Yanase, Takeru Ohta, Masanori Koyama. Optuna: A Next-generation Hyperparameter Optimization Framework. Proceedings of the 25th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (2019). [arXiv:1907.10902](https://arxiv.org/abs/1907.10902#)
...
Please note that this list of citations is not exhaustive, we have had several additional influences that are cited in the papers of the [Automunge Medium Publication](https://medium.com/automunge).
...
As a quick clarification on the various permutations of the term “Automunge” used in codebase:
Automunge - The name of the library which prepares data for machine learning. Note that Automunge Inc. is doing business as Automunge. Note that imports are conducted by “pip install Automunge”. Note that Automunge is also the name of a folder in the GitHub repository. "Automunge" is a registered trademark.
AutoMunge - name of a defined class in the Automunge library. Note that jupyter notebook initializations are recommended as
```
from Automunge import *
am = AutoMunge()
```
Note that AutoMunge is also used as the title of a GitHub repository published by the Automunge account where we have been sharing code.
Automunger - name of a file published in GitHub repository (as Automunger.py) which is saved in the folder titled Automunge
automunge(.) - name of a function defined in the AutoMunge class in the Automunge library which is the central interface for initial preparations of data.
postmunge(.) - name of a function defined in the AutoMunge class in the Automunge library which is the central interface for subsequent preparations of additional data on the same basis.
...
Please note that the pickle library has a security vulnerability when loading an object of unknown origin. We do not use pickle in our codebase but suggested use above for downloading a returned postprocess_dict because of its ability to serialize and download arbitrary python objects. If you intend to distribute a pickled postprocess_dict publicly, the [python docs](https://docs.python.org/3/library/pickle.html) suggest signing the data with [hmac](https://docs.python.org/3/library/hmac.html#module-hmac) to ensure that it has not been tampered with.
...
Please note that Automunge imports make use of the Pandas, Scikit-Learn, Numpy, and Scipy Stats libraries
which are released under a 3-Clause BSD license. We include options that may import the
Catboost or XGBoost libraries which are released under the Apache License 2.0, as well as options for the FLAML and Optuna libraries which are released under a MIT License.
...
Have fun munging!!
...
You can read more about the tool through the blog posts documenting the
development online at the [Automunge Medium Publication](https://medium.com/automunge)
or for more writing there is a related collection of essays titled [From
the Diaries of John Henry](https://turingsquared.com).
The Automunge website is helpfully located at
[automunge.com](https://automunge.com).
If you are looking for something to cite, our paper [Tabular Engineering with Automunge](https://datacentricai.org/papers/15_CameraReady_TabularEngineering_102621_Final.pdf) was accepted to the 2021 NeurIPS Data-Centric AI workshop.
...
This file is part of Automunge which is released under the BSD-3-Clause license.
See file LICENSE or go to https://github.com/Automunge/AutoMunge for full license details.
contact available via [automunge.com](https://automunge.com)
Copyright (C) 2018, 2019, 2020, 2021, 2022, 2023 - All Rights Reserved
Patent Pending
%prep
%autosetup -n Automunge-8.32
%build
%py3_build
%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .
%files -n python3-Automunge -f filelist.lst
%dir %{python3_sitelib}/*
%files help -f doclist.lst
%{_docdir}/*
%changelog
* Mon Apr 10 2023 Python_Bot <Python_Bot@openeuler.org> - 8.32-1
- Package Spec generated
|