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%global _empty_manifest_terminate_build 0
Name: python-azulejo
Version: 0.10.1
Release: 1
Summary: tile phylogenetic space with subtrees
License: BSD-3-Clause
URL: https://github.com/joelb123/azulejo
Source0: https://mirrors.nju.edu.cn/pypi/web/packages/86/8e/ec41ab485ca96895bfa4f9ce2ceb2857dd0f7a21e70cb21d4937082dbe1e/azulejo-0.10.1.tar.gz
BuildArch: noarch
Requires: python3-click
Requires: python3-dask[bag]
Requires: python3-matplotlib
Requires: python3-numpy
Requires: python3-pandas
Requires: python3-click_plugins
Requires: python3-networkx
Requires: python3-uri
Requires: python3-toml
Requires: python3-pathvalidate
Requires: python3-attrs
Requires: python3-smart-open
Requires: python3-paramiko
Requires: python3-phylopandas
Requires: python3-click_loguru
Requires: python3-xxhash
Requires: python3-seaborn
Requires: python3-memory-tempfile
Requires: python3-progressbar2
Requires: python3-requests_download
Requires: python3-packaging
Requires: python3-pyarrow
Requires: python3-biopython
Requires: python3-sh
Requires: python3-gffpandas-jb
Requires: python3-beautifulsoup4
Requires: python3-fastaq
Requires: python3-amas
%description
``azulejo`` azulejo combines homology and synteny information to
tile phylogenetic space.
The inputs to ``azulejo`` are FASTA files of nucleotide-space
sequences of primary-transcript protein genes and their associated GFF files.
Outputs are sets of proxy gene fragments chosen for
their concordance in multiple sequence alignments, along with
subtrees.
%package -n python3-azulejo
Summary: tile phylogenetic space with subtrees
Provides: python-azulejo
BuildRequires: python3-devel
BuildRequires: python3-setuptools
BuildRequires: python3-pip
%description -n python3-azulejo
``azulejo`` azulejo combines homology and synteny information to
tile phylogenetic space.
The inputs to ``azulejo`` are FASTA files of nucleotide-space
sequences of primary-transcript protein genes and their associated GFF files.
Outputs are sets of proxy gene fragments chosen for
their concordance in multiple sequence alignments, along with
subtrees.
%package help
Summary: Development documents and examples for azulejo
Provides: python3-azulejo-doc
%description help
``azulejo`` azulejo combines homology and synteny information to
tile phylogenetic space.
The inputs to ``azulejo`` are FASTA files of nucleotide-space
sequences of primary-transcript protein genes and their associated GFF files.
Outputs are sets of proxy gene fragments chosen for
their concordance in multiple sequence alignments, along with
subtrees.
%prep
%autosetup -n azulejo-0.10.1
%build
%py3_build
%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .
%files -n python3-azulejo -f filelist.lst
%dir %{python3_sitelib}/*
%files help -f doclist.lst
%{_docdir}/*
%changelog
* Wed May 31 2023 Python_Bot <Python_Bot@openeuler.org> - 0.10.1-1
- Package Spec generated
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