diff options
| author | CoprDistGit <infra@openeuler.org> | 2023-04-11 22:28:20 +0000 |
|---|---|---|
| committer | CoprDistGit <infra@openeuler.org> | 2023-04-11 22:28:20 +0000 |
| commit | b2748596f5fe91c8f73559b37bf859a2cc290ee8 (patch) | |
| tree | 494991eeab7ffefc76133758ea96237f136f3fc5 | |
| parent | 77964e19a3a02be7ecdea0b6bfd4260e3597b0a7 (diff) | |
automatic import of python-bdbag
| -rw-r--r-- | .gitignore | 1 | ||||
| -rw-r--r-- | python-bdbag.spec | 454 | ||||
| -rw-r--r-- | sources | 1 |
3 files changed, 456 insertions, 0 deletions
@@ -0,0 +1 @@ +/bdbag-1.6.4.tar.gz diff --git a/python-bdbag.spec b/python-bdbag.spec new file mode 100644 index 0000000..9dcdc10 --- /dev/null +++ b/python-bdbag.spec @@ -0,0 +1,454 @@ +%global _empty_manifest_terminate_build 0 +Name: python-bdbag +Version: 1.6.4 +Release: 1 +Summary: Big Data Bag Utilities +License: Apache 2.0 +URL: https://github.com/fair-research/bdbag/ +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/07/f0/59784061351b4f148658694c4de44ff7cd01706beaff4d4c56b05c632dc8/bdbag-1.6.4.tar.gz +BuildArch: noarch + +Requires: python3-pytz +Requires: python3-tzlocal +Requires: python3-certifi +Requires: python3-requests +Requires: python3-setuptools-scm +Requires: python3-bagit +Requires: python3-bagit-profile +Requires: python3-requests +Requires: python3-boto3 +Requires: python3-botocore +Requires: python3-awscli +Requires: python3-google-cloud-storage +Requires: python3-globus-sdk + +%description +# bdbag +[](https://app.travis-ci.com/fair-research/bdbag) +[](https://coveralls.io/github/fair-research/bdbag?branch=master) +[](https://pypi.python.org/pypi/bdbag) +[](https://pepy.tech/project/bdbag) +[](https://pypi.python.org/pypi/bdbag) +[](https://anaconda.org/conda-forge/bdbag) +[](https://anaconda.org/conda-forge/bdbag) +[](https://pypi.python.org/pypi/bdbag) +[](http://www.apache.org/licenses/LICENSE-2.0) + +## Big Data Bag Utilities + +The `bdbag` utilities are a collection of software programs for working with +[BagIt](https://datatracker.ietf.org/doc/draft-kunze-bagit/) packages that conform to the BDBag and Bagit/RO profiles. + +The `bdbag` [profiles](https://github.com/fair-research/bdbag/tree/master/profiles) specify the use of the `fetch.txt` +file, require serialization, and specify what manifests must be provided with a `bdbag`. + +The `bdbag` utilities incorporate functions from various other Python-based `bagit` components (such as the +[Bagit-Python](https://github.com/LibraryOfCongress/bagit-python) bag creation utility and the +[Bagit-Profiles-Validator](https://github.com/ruebot/bagit-profiles) +utility) and wraps them in a single, easy to use software package with additional features. + +Enhanced bag support includes: + +* Update-in-place functionality for existing bags. +* Automatic archiving and extraction of bags using ZIP, TAR, and TGZ formats. +* Automatic generation of file manifest entries and `fetch.txt` for remote files via configuration file. +* Automatic file retrieval based on the contents of a bag's `fetch.txt` file with multiple protocol support. Transport + handlers for `http(s)`,`ftp`,`s3`,`gs`, and `globus` are provided, along with an extensibility mechanism for adding + externally developed transports. +* Built-in `bagit-profile` validation. +* Built-in support for creation of bags with [Bagit/RO profile](https://github.com/ResearchObject/bagit-ro) compatibility. + +An experimental Graphical User Interface (GUI) for `bdbag` can be found [here](https://github.com/fair-research/bdbag_gui). + +#### Technical Papers + +["I'll take that to go: Big data bags and minimal identifiers for exchange of large, complex datasets"](https://zenodo.org/record/820878) explains the motivation for BDBags and the related Minid construct, provides details on design and implementation, and gives examples of use. + +["Reproducible big data science: A case study in continuous FAIRness"](https://www.biorxiv.org/content/early/2018/02/27/268755) presents a data analysis use case in which BDBags and Minids are used to capture a transcription factor binding site analysis. + +### Dependencies + +* [Python 2.7](https://www.python.org/downloads/release/python-27/) is the minimum Python version required. +* The code and dependencies are also compatible with Python 3, versions 3.5 through 3.9. + +### Installation +The latest `bdbag` release is available on PyPi and can be installed using `pip`: + +```sh +pip install bdbag +``` + +Note that the above command will install `bdbag` with only the minimal dependencies required to run. +If you wish to install `bdbag` with the extra fetch transport handler support provided by `boto` (for AWS S3) +and `globus` (for Globus Transfer) packages, use the following command: +```sh +pip install bdbag[boto,globus] +``` + +### Installation from Source +You can use `pip` to install `bdbag` directly from GitHub: + +```sh +sudo pip install git+https://github.com/fair-research/bdbag +``` +or: +```sh +pip install --user git+https://github.com/fair-research/bdbag +``` + +You can also [download](https://github.com/fair-research/bdbag/archive/master.zip) the current `bdbag` source code from GitHub or +alternatively clone the source from GitHub if you have *git* installed: + +```sh +git clone https://github.com/fair-research/bdbag +``` +From the root of the `bdbag` source code directory execute the following command: +```sh +sudo pip install . +``` +or: +```sh +pip install --user . +``` +Note that if you want to install the extra dependencies from a local source directory you would use the following command: +```sh +pip install .[boto,globus] +``` + +### Testing +The unit tests can be run by invoking the following command from the root of the `bdbag` source code directory: +```sh +python setup.py test +``` + +### Usage + +This software can be used from the command-line environment by running the `bdbag` script. For detailed usage +instructions, see the [CLI Guide](./doc/cli.md). + +### Configuration + +Some components of the `bdbag` software can be configured via JSON-formatted configuration files. +See the [Configuration Guide](./doc/config.md) for further details. + +### Application Programming Interface + +It is also possible to use `bdbag` from within other Python programs via an API. +See the [API Guide](./doc/api.md) for further details. + +### Utilities + +A CLI utility module is provided for various ancillary tasks commonly involved with authoring **bdbags**. +See the [Utility Guide](./doc/utils.md) for further details. + +### Change Log + +The change log is located [here](CHANGELOG.md). + + + + +%package -n python3-bdbag +Summary: Big Data Bag Utilities +Provides: python-bdbag +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-bdbag +# bdbag +[](https://app.travis-ci.com/fair-research/bdbag) +[](https://coveralls.io/github/fair-research/bdbag?branch=master) +[](https://pypi.python.org/pypi/bdbag) +[](https://pepy.tech/project/bdbag) +[](https://pypi.python.org/pypi/bdbag) +[](https://anaconda.org/conda-forge/bdbag) +[](https://anaconda.org/conda-forge/bdbag) +[](https://pypi.python.org/pypi/bdbag) +[](http://www.apache.org/licenses/LICENSE-2.0) + +## Big Data Bag Utilities + +The `bdbag` utilities are a collection of software programs for working with +[BagIt](https://datatracker.ietf.org/doc/draft-kunze-bagit/) packages that conform to the BDBag and Bagit/RO profiles. + +The `bdbag` [profiles](https://github.com/fair-research/bdbag/tree/master/profiles) specify the use of the `fetch.txt` +file, require serialization, and specify what manifests must be provided with a `bdbag`. + +The `bdbag` utilities incorporate functions from various other Python-based `bagit` components (such as the +[Bagit-Python](https://github.com/LibraryOfCongress/bagit-python) bag creation utility and the +[Bagit-Profiles-Validator](https://github.com/ruebot/bagit-profiles) +utility) and wraps them in a single, easy to use software package with additional features. + +Enhanced bag support includes: + +* Update-in-place functionality for existing bags. +* Automatic archiving and extraction of bags using ZIP, TAR, and TGZ formats. +* Automatic generation of file manifest entries and `fetch.txt` for remote files via configuration file. +* Automatic file retrieval based on the contents of a bag's `fetch.txt` file with multiple protocol support. Transport + handlers for `http(s)`,`ftp`,`s3`,`gs`, and `globus` are provided, along with an extensibility mechanism for adding + externally developed transports. +* Built-in `bagit-profile` validation. +* Built-in support for creation of bags with [Bagit/RO profile](https://github.com/ResearchObject/bagit-ro) compatibility. + +An experimental Graphical User Interface (GUI) for `bdbag` can be found [here](https://github.com/fair-research/bdbag_gui). + +#### Technical Papers + +["I'll take that to go: Big data bags and minimal identifiers for exchange of large, complex datasets"](https://zenodo.org/record/820878) explains the motivation for BDBags and the related Minid construct, provides details on design and implementation, and gives examples of use. + +["Reproducible big data science: A case study in continuous FAIRness"](https://www.biorxiv.org/content/early/2018/02/27/268755) presents a data analysis use case in which BDBags and Minids are used to capture a transcription factor binding site analysis. + +### Dependencies + +* [Python 2.7](https://www.python.org/downloads/release/python-27/) is the minimum Python version required. +* The code and dependencies are also compatible with Python 3, versions 3.5 through 3.9. + +### Installation +The latest `bdbag` release is available on PyPi and can be installed using `pip`: + +```sh +pip install bdbag +``` + +Note that the above command will install `bdbag` with only the minimal dependencies required to run. +If you wish to install `bdbag` with the extra fetch transport handler support provided by `boto` (for AWS S3) +and `globus` (for Globus Transfer) packages, use the following command: +```sh +pip install bdbag[boto,globus] +``` + +### Installation from Source +You can use `pip` to install `bdbag` directly from GitHub: + +```sh +sudo pip install git+https://github.com/fair-research/bdbag +``` +or: +```sh +pip install --user git+https://github.com/fair-research/bdbag +``` + +You can also [download](https://github.com/fair-research/bdbag/archive/master.zip) the current `bdbag` source code from GitHub or +alternatively clone the source from GitHub if you have *git* installed: + +```sh +git clone https://github.com/fair-research/bdbag +``` +From the root of the `bdbag` source code directory execute the following command: +```sh +sudo pip install . +``` +or: +```sh +pip install --user . +``` +Note that if you want to install the extra dependencies from a local source directory you would use the following command: +```sh +pip install .[boto,globus] +``` + +### Testing +The unit tests can be run by invoking the following command from the root of the `bdbag` source code directory: +```sh +python setup.py test +``` + +### Usage + +This software can be used from the command-line environment by running the `bdbag` script. For detailed usage +instructions, see the [CLI Guide](./doc/cli.md). + +### Configuration + +Some components of the `bdbag` software can be configured via JSON-formatted configuration files. +See the [Configuration Guide](./doc/config.md) for further details. + +### Application Programming Interface + +It is also possible to use `bdbag` from within other Python programs via an API. +See the [API Guide](./doc/api.md) for further details. + +### Utilities + +A CLI utility module is provided for various ancillary tasks commonly involved with authoring **bdbags**. +See the [Utility Guide](./doc/utils.md) for further details. + +### Change Log + +The change log is located [here](CHANGELOG.md). + + + + +%package help +Summary: Development documents and examples for bdbag +Provides: python3-bdbag-doc +%description help +# bdbag +[](https://app.travis-ci.com/fair-research/bdbag) +[](https://coveralls.io/github/fair-research/bdbag?branch=master) +[](https://pypi.python.org/pypi/bdbag) +[](https://pepy.tech/project/bdbag) +[](https://pypi.python.org/pypi/bdbag) +[](https://anaconda.org/conda-forge/bdbag) +[](https://anaconda.org/conda-forge/bdbag) +[](https://pypi.python.org/pypi/bdbag) +[](http://www.apache.org/licenses/LICENSE-2.0) + +## Big Data Bag Utilities + +The `bdbag` utilities are a collection of software programs for working with +[BagIt](https://datatracker.ietf.org/doc/draft-kunze-bagit/) packages that conform to the BDBag and Bagit/RO profiles. + +The `bdbag` [profiles](https://github.com/fair-research/bdbag/tree/master/profiles) specify the use of the `fetch.txt` +file, require serialization, and specify what manifests must be provided with a `bdbag`. + +The `bdbag` utilities incorporate functions from various other Python-based `bagit` components (such as the +[Bagit-Python](https://github.com/LibraryOfCongress/bagit-python) bag creation utility and the +[Bagit-Profiles-Validator](https://github.com/ruebot/bagit-profiles) +utility) and wraps them in a single, easy to use software package with additional features. + +Enhanced bag support includes: + +* Update-in-place functionality for existing bags. +* Automatic archiving and extraction of bags using ZIP, TAR, and TGZ formats. +* Automatic generation of file manifest entries and `fetch.txt` for remote files via configuration file. +* Automatic file retrieval based on the contents of a bag's `fetch.txt` file with multiple protocol support. Transport + handlers for `http(s)`,`ftp`,`s3`,`gs`, and `globus` are provided, along with an extensibility mechanism for adding + externally developed transports. +* Built-in `bagit-profile` validation. +* Built-in support for creation of bags with [Bagit/RO profile](https://github.com/ResearchObject/bagit-ro) compatibility. + +An experimental Graphical User Interface (GUI) for `bdbag` can be found [here](https://github.com/fair-research/bdbag_gui). + +#### Technical Papers + +["I'll take that to go: Big data bags and minimal identifiers for exchange of large, complex datasets"](https://zenodo.org/record/820878) explains the motivation for BDBags and the related Minid construct, provides details on design and implementation, and gives examples of use. + +["Reproducible big data science: A case study in continuous FAIRness"](https://www.biorxiv.org/content/early/2018/02/27/268755) presents a data analysis use case in which BDBags and Minids are used to capture a transcription factor binding site analysis. + +### Dependencies + +* [Python 2.7](https://www.python.org/downloads/release/python-27/) is the minimum Python version required. +* The code and dependencies are also compatible with Python 3, versions 3.5 through 3.9. + +### Installation +The latest `bdbag` release is available on PyPi and can be installed using `pip`: + +```sh +pip install bdbag +``` + +Note that the above command will install `bdbag` with only the minimal dependencies required to run. +If you wish to install `bdbag` with the extra fetch transport handler support provided by `boto` (for AWS S3) +and `globus` (for Globus Transfer) packages, use the following command: +```sh +pip install bdbag[boto,globus] +``` + +### Installation from Source +You can use `pip` to install `bdbag` directly from GitHub: + +```sh +sudo pip install git+https://github.com/fair-research/bdbag +``` +or: +```sh +pip install --user git+https://github.com/fair-research/bdbag +``` + +You can also [download](https://github.com/fair-research/bdbag/archive/master.zip) the current `bdbag` source code from GitHub or +alternatively clone the source from GitHub if you have *git* installed: + +```sh +git clone https://github.com/fair-research/bdbag +``` +From the root of the `bdbag` source code directory execute the following command: +```sh +sudo pip install . +``` +or: +```sh +pip install --user . +``` +Note that if you want to install the extra dependencies from a local source directory you would use the following command: +```sh +pip install .[boto,globus] +``` + +### Testing +The unit tests can be run by invoking the following command from the root of the `bdbag` source code directory: +```sh +python setup.py test +``` + +### Usage + +This software can be used from the command-line environment by running the `bdbag` script. For detailed usage +instructions, see the [CLI Guide](./doc/cli.md). + +### Configuration + +Some components of the `bdbag` software can be configured via JSON-formatted configuration files. +See the [Configuration Guide](./doc/config.md) for further details. + +### Application Programming Interface + +It is also possible to use `bdbag` from within other Python programs via an API. +See the [API Guide](./doc/api.md) for further details. + +### Utilities + +A CLI utility module is provided for various ancillary tasks commonly involved with authoring **bdbags**. +See the [Utility Guide](./doc/utils.md) for further details. + +### Change Log + +The change log is located [here](CHANGELOG.md). + + + + +%prep +%autosetup -n bdbag-1.6.4 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-bdbag -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Tue Apr 11 2023 Python_Bot <Python_Bot@openeuler.org> - 1.6.4-1 +- Package Spec generated @@ -0,0 +1 @@ +852858a3e59dd0e48ea54ee3d1e8a55e bdbag-1.6.4.tar.gz |