From f9b6dcf4bd839c69e107cf68e77cdc2d83c7993a Mon Sep 17 00:00:00 2001 From: CoprDistGit Date: Wed, 31 May 2023 03:30:13 +0000 Subject: automatic import of python-biosimulators-amici --- .gitignore | 1 + python-biosimulators-amici.spec | 118 ++++++++++++++++++++++++++++++++++++++++ sources | 1 + 3 files changed, 120 insertions(+) create mode 100644 python-biosimulators-amici.spec create mode 100644 sources diff --git a/.gitignore b/.gitignore index e69de29..96e6294 100644 --- a/.gitignore +++ b/.gitignore @@ -0,0 +1 @@ +/biosimulators_amici-0.1.22.tar.gz diff --git a/python-biosimulators-amici.spec b/python-biosimulators-amici.spec new file mode 100644 index 0000000..d8a37c9 --- /dev/null +++ b/python-biosimulators-amici.spec @@ -0,0 +1,118 @@ +%global _empty_manifest_terminate_build 0 +Name: python-biosimulators-amici +Version: 0.1.22 +Release: 1 +Summary: BioSimulators-compliant command-line interface to the AMICI simulation program . +License: MIT +URL: https://github.com/biosimulators/Biosimulators_AMICI> +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/9c/dc/deae31ed9cd9ba1885e3ec7b275ce89953d6c0629cd05e6ab0a77e9b4d58/biosimulators_amici-0.1.22.tar.gz +BuildArch: noarch + +Requires: python3-amici +Requires: python3-biosimulators-utils[logging] +Requires: python3-kisao +Requires: python3-lxml +Requires: python3-numpy +Requires: python3-sympy +Requires: python3-biosimulators-utils[containers] +Requires: python3-dateutil +Requires: python3-biosimulators-utils[containers] +Requires: python3-dateutil + +%description +BioSimulators-compliant command-line interface to the +`AMICI `__ simulation program. +This command-line interface and Docker image enable users to use AMICI +to execute `COMBINE/OMEX archives `__ that +describe one or more simulation experiments (in `SED-ML +format `__) of one or more models (in `SBML +format `__). +A list of the algorithms and algorithm parameters supported by AMICI is +available at +`BioSimulators `__. +A simple web application and web service for using AMICI to execute +COMBINE/OMEX archives is also available at +`runBioSimulations `__. + +%package -n python3-biosimulators-amici +Summary: BioSimulators-compliant command-line interface to the AMICI simulation program . +Provides: python-biosimulators-amici +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-biosimulators-amici +BioSimulators-compliant command-line interface to the +`AMICI `__ simulation program. +This command-line interface and Docker image enable users to use AMICI +to execute `COMBINE/OMEX archives `__ that +describe one or more simulation experiments (in `SED-ML +format `__) of one or more models (in `SBML +format `__). +A list of the algorithms and algorithm parameters supported by AMICI is +available at +`BioSimulators `__. +A simple web application and web service for using AMICI to execute +COMBINE/OMEX archives is also available at +`runBioSimulations `__. + +%package help +Summary: Development documents and examples for biosimulators-amici +Provides: python3-biosimulators-amici-doc +%description help +BioSimulators-compliant command-line interface to the +`AMICI `__ simulation program. +This command-line interface and Docker image enable users to use AMICI +to execute `COMBINE/OMEX archives `__ that +describe one or more simulation experiments (in `SED-ML +format `__) of one or more models (in `SBML +format `__). +A list of the algorithms and algorithm parameters supported by AMICI is +available at +`BioSimulators `__. +A simple web application and web service for using AMICI to execute +COMBINE/OMEX archives is also available at +`runBioSimulations `__. + +%prep +%autosetup -n biosimulators-amici-0.1.22 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-biosimulators-amici -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Wed May 31 2023 Python_Bot - 0.1.22-1 +- Package Spec generated diff --git a/sources b/sources new file mode 100644 index 0000000..85db859 --- /dev/null +++ b/sources @@ -0,0 +1 @@ +0a98a94a486d40e4ee5154665f5cdb2f biosimulators_amici-0.1.22.tar.gz -- cgit v1.2.3