From 727af06139cd287d71f9b213ed144740cff5ee10 Mon Sep 17 00:00:00 2001 From: CoprDistGit Date: Fri, 5 May 2023 04:22:39 +0000 Subject: automatic import of python-biosimulators-test-suite --- .gitignore | 1 + python-biosimulators-test-suite.spec | 158 +++++++++++++++++++++++++++++++++++ sources | 1 + 3 files changed, 160 insertions(+) create mode 100644 python-biosimulators-test-suite.spec create mode 100644 sources diff --git a/.gitignore b/.gitignore index e69de29..5ee5b4b 100644 --- a/.gitignore +++ b/.gitignore @@ -0,0 +1 @@ +/biosimulators_test_suite-0.1.87.tar.gz diff --git a/python-biosimulators-test-suite.spec b/python-biosimulators-test-suite.spec new file mode 100644 index 0000000..012c959 --- /dev/null +++ b/python-biosimulators-test-suite.spec @@ -0,0 +1,158 @@ +%global _empty_manifest_terminate_build 0 +Name: python-biosimulators-test-suite +Version: 0.1.87 +Release: 1 +Summary: Tools for validating that biosimulation tools are consistent with the BioSimulators standards +License: MIT +URL: https://github.com/biosimulators/Biosimulators_test_suite +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/ea/f0/638d34261fd6757ebf4675156bb3813839e5fb9a5b0cee9ac61e2e40a560/biosimulators_test_suite-0.1.87.tar.gz +BuildArch: noarch + +Requires: python3-PyPDF2 +Requires: python3-biosimulators-utils[bngl,cellml,containers,lems,neuroml,sbml,smoldyn] +Requires: python3-cement +Requires: python3-docker +Requires: python3-natsort +Requires: python3-numpy +Requires: python3-dateutil +Requires: python3-pyyaml +Requires: python3-simplejson +Requires: python3-termcolor +Requires: python3-biosimulators-utils[logging] +Requires: python3-parameterized +Requires: python3-biosimulators-utils[logging] +Requires: python3-parameterized + +%description +The BioSimulators test suite is a tool for validating that biosimulation +software tools implement the `BioSimulators conventions for +biosimulation +tools `__. +The test suite is composed of two parts: +- `A collection of example modeling projects `__. Each + project is represented by a single `COMBINE/OMEX + archive `__ that contains one or more + simulation experiments described using the `Simulation Experiment + Description Markup Language (SED-ML) `__ and one + or more models described using a format such as the `BioNetGen + Language (BNGL) `__ or the `Systems Biology + Markup Language (SBML) `__. +- Software for checking that biosimulation tools execute these projects + according to the BioSimulators conventions. + - Simulation tools support the `BioSimulators standard command-line + arguments `__. + - Simulation tools support the `BioSimulators conventions for Docker + images `__. + - Simulation tools follow the `BioSimulators conventions for + executing simulations described by SED-ML files in COMBINE/OMEX + archives `__. + - Simulation tools support the `BioSimulators conventions for the + outputs of SED-ML files in COMBINE/OMEX + archives `__. + +%package -n python3-biosimulators-test-suite +Summary: Tools for validating that biosimulation tools are consistent with the BioSimulators standards +Provides: python-biosimulators-test-suite +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-biosimulators-test-suite +The BioSimulators test suite is a tool for validating that biosimulation +software tools implement the `BioSimulators conventions for +biosimulation +tools `__. +The test suite is composed of two parts: +- `A collection of example modeling projects `__. Each + project is represented by a single `COMBINE/OMEX + archive `__ that contains one or more + simulation experiments described using the `Simulation Experiment + Description Markup Language (SED-ML) `__ and one + or more models described using a format such as the `BioNetGen + Language (BNGL) `__ or the `Systems Biology + Markup Language (SBML) `__. +- Software for checking that biosimulation tools execute these projects + according to the BioSimulators conventions. + - Simulation tools support the `BioSimulators standard command-line + arguments `__. + - Simulation tools support the `BioSimulators conventions for Docker + images `__. + - Simulation tools follow the `BioSimulators conventions for + executing simulations described by SED-ML files in COMBINE/OMEX + archives `__. + - Simulation tools support the `BioSimulators conventions for the + outputs of SED-ML files in COMBINE/OMEX + archives `__. + +%package help +Summary: Development documents and examples for biosimulators-test-suite +Provides: python3-biosimulators-test-suite-doc +%description help +The BioSimulators test suite is a tool for validating that biosimulation +software tools implement the `BioSimulators conventions for +biosimulation +tools `__. +The test suite is composed of two parts: +- `A collection of example modeling projects `__. Each + project is represented by a single `COMBINE/OMEX + archive `__ that contains one or more + simulation experiments described using the `Simulation Experiment + Description Markup Language (SED-ML) `__ and one + or more models described using a format such as the `BioNetGen + Language (BNGL) `__ or the `Systems Biology + Markup Language (SBML) `__. +- Software for checking that biosimulation tools execute these projects + according to the BioSimulators conventions. + - Simulation tools support the `BioSimulators standard command-line + arguments `__. + - Simulation tools support the `BioSimulators conventions for Docker + images `__. + - Simulation tools follow the `BioSimulators conventions for + executing simulations described by SED-ML files in COMBINE/OMEX + archives `__. + - Simulation tools support the `BioSimulators conventions for the + outputs of SED-ML files in COMBINE/OMEX + archives `__. + +%prep +%autosetup -n biosimulators-test-suite-0.1.87 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-biosimulators-test-suite -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Fri May 05 2023 Python_Bot - 0.1.87-1 +- Package Spec generated diff --git a/sources b/sources new file mode 100644 index 0000000..b3f80f9 --- /dev/null +++ b/sources @@ -0,0 +1 @@ +7ae4845c72d23f6e096e32469962125e biosimulators_test_suite-0.1.87.tar.gz -- cgit v1.2.3