From aff0e33848391d0c3793f33fdf56b6bb8f9ce54c Mon Sep 17 00:00:00 2001 From: CoprDistGit Date: Fri, 9 Jun 2023 01:49:48 +0000 Subject: automatic import of python-celescope --- .gitignore | 1 + python-celescope.spec | 162 ++++++++++++++++++++++++++++++++++++++++++++++++++ sources | 1 + 3 files changed, 164 insertions(+) create mode 100644 python-celescope.spec create mode 100644 sources diff --git a/.gitignore b/.gitignore index e69de29..5cc613b 100644 --- a/.gitignore +++ b/.gitignore @@ -0,0 +1 @@ +/celescope-1.15.2.tar.gz diff --git a/python-celescope.spec b/python-celescope.spec new file mode 100644 index 0000000..a4e5a23 --- /dev/null +++ b/python-celescope.spec @@ -0,0 +1,162 @@ +%global _empty_manifest_terminate_build 0 +Name: python-celescope +Version: 1.15.2 +Release: 1 +Summary: Single Cell Analysis Pipelines +License: MIT License +URL: https://github.com/singleron-RD/CeleScope +Source0: https://mirrors.aliyun.com/pypi/web/packages/d4/7c/882a406973d57ed2fa85ab7f5b1600f8b53700d03423253e584287463f5c/celescope-1.15.2.tar.gz +BuildArch: noarch + +Requires: python3-cutadapt +Requires: python3-pysam +Requires: python3-scipy +Requires: python3-numpy +Requires: python3-jinja2 +Requires: python3-xopen +Requires: python3-editdistance +Requires: python3-scikit-learn +Requires: python3-plotly +Requires: python3-plotnine +Requires: python3-matplotlib +Requires: python3-cython +Requires: python3-pytest +Requires: python3-venn +Requires: python3-pyranges +Requires: python3-scanpy +Requires: python3-statsmodels +Requires: python3-leidenalg +Requires: python3-igraph +Requires: python3-pandas +Requires: python3-biopython +Requires: python3-xlwt +Requires: python3-anndata +Requires: python3-kaleido + +%description + +# Introduction +CeleScope is a collection of bioinfomatics analysis pipelines to process single cell sequencing data generated with Singleron products. These pipelines take paired-end FASTQ files as input and generate output files which can be used for downstream data analysis as well as a summary of QC criteria. + +# Documentation + +[Quick start](./docs/quick_start.md) + +Detailed docs can be found in [manual](./docs/manual.md). + +# Support +Please use the issue tracker for questions and malfunctions. + +# About +CeleScope is currently developed by Singleron Biotechnologies. + +[www.singleron.bio](https://www.singleron.bio) + + + + + + + +%package -n python3-celescope +Summary: Single Cell Analysis Pipelines +Provides: python-celescope +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-celescope + +# Introduction +CeleScope is a collection of bioinfomatics analysis pipelines to process single cell sequencing data generated with Singleron products. These pipelines take paired-end FASTQ files as input and generate output files which can be used for downstream data analysis as well as a summary of QC criteria. + +# Documentation + +[Quick start](./docs/quick_start.md) + +Detailed docs can be found in [manual](./docs/manual.md). + +# Support +Please use the issue tracker for questions and malfunctions. + +# About +CeleScope is currently developed by Singleron Biotechnologies. + +[www.singleron.bio](https://www.singleron.bio) + + + + + + + +%package help +Summary: Development documents and examples for celescope +Provides: python3-celescope-doc +%description help + +# Introduction +CeleScope is a collection of bioinfomatics analysis pipelines to process single cell sequencing data generated with Singleron products. These pipelines take paired-end FASTQ files as input and generate output files which can be used for downstream data analysis as well as a summary of QC criteria. + +# Documentation + +[Quick start](./docs/quick_start.md) + +Detailed docs can be found in [manual](./docs/manual.md). + +# Support +Please use the issue tracker for questions and malfunctions. + +# About +CeleScope is currently developed by Singleron Biotechnologies. + +[www.singleron.bio](https://www.singleron.bio) + + + + + + + +%prep +%autosetup -n celescope-1.15.2 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-celescope -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Fri Jun 09 2023 Python_Bot - 1.15.2-1 +- Package Spec generated diff --git a/sources b/sources new file mode 100644 index 0000000..5d18500 --- /dev/null +++ b/sources @@ -0,0 +1 @@ +fbbff0f1e2a35a32a55d74a7ea37d83a celescope-1.15.2.tar.gz -- cgit v1.2.3