automatic import of python-cipipe

3 files changed, 74 insertions, 0 deletions

diff --git a/.gitignore b/.gitignore
index e69de29..5e1b136 100644
--- a/.gitignore
+++ b/.gitignore
@@ -0,0 +1 @@
+/CIpipe-1.149.tar.gz
diff --git a/python-cipipe.spec b/python-cipipe.spec
new file mode 100644
index 0000000..bc73b90
--- /dev/null
+++ b/python-cipipe.spec
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+%global _empty_manifest_terminate_build 0
+Name:		python-CIpipe
+Version:	1.149
+Release:	1
+Summary:	CRISPR Indel pipe
+License:	GPLv3
+URL:		https://zlab.umassmed.edu/CIpipe/
+Source0:	https://mirrors.nju.edu.cn/pypi/web/packages/8d/e7/9b6438e7e27b30e413b78ff3b254bcfc5ca7c8b6228423d89471af599a6c/CIpipe-1.149.tar.gz
+BuildArch:	noarch
+
+
+%description
+CRISPR has been a prevalent and powerful tool for gene editing in recent years. With the appliance of CRISPR, researchers could change DNA structures by inducing indel (insertion/deletion) at specific locus conveniently. In order to examine the efficiency of CRISPR experiment, high-through sequencing on target region will be performed, which brings the computational question. To address this issue, we developed a pipeline, 'CIpipe (CRISPR Indel pipe)', to analyze the target sequencing data for indel after CRISPR experiment. CIpipe is easy to use and can produce understandable results for paper writing quickly.
+
+%package -n python3-CIpipe
+Summary:	CRISPR Indel pipe
+Provides:	python-CIpipe
+BuildRequires:	python3-devel
+BuildRequires:	python3-setuptools
+BuildRequires:	python3-pip
+%description -n python3-CIpipe
+CRISPR has been a prevalent and powerful tool for gene editing in recent years. With the appliance of CRISPR, researchers could change DNA structures by inducing indel (insertion/deletion) at specific locus conveniently. In order to examine the efficiency of CRISPR experiment, high-through sequencing on target region will be performed, which brings the computational question. To address this issue, we developed a pipeline, 'CIpipe (CRISPR Indel pipe)', to analyze the target sequencing data for indel after CRISPR experiment. CIpipe is easy to use and can produce understandable results for paper writing quickly.
+
+%package help
+Summary:	Development documents and examples for CIpipe
+Provides:	python3-CIpipe-doc
+%description help
+CRISPR has been a prevalent and powerful tool for gene editing in recent years. With the appliance of CRISPR, researchers could change DNA structures by inducing indel (insertion/deletion) at specific locus conveniently. In order to examine the efficiency of CRISPR experiment, high-through sequencing on target region will be performed, which brings the computational question. To address this issue, we developed a pipeline, 'CIpipe (CRISPR Indel pipe)', to analyze the target sequencing data for indel after CRISPR experiment. CIpipe is easy to use and can produce understandable results for paper writing quickly.
+
+%prep
+%autosetup -n CIpipe-1.149
+
+%build
+%py3_build
+
+%install
+%py3_install
+install -d -m755 %{buildroot}/%{_pkgdocdir}
+if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
+if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
+if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
+if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
+pushd %{buildroot}
+if [ -d usr/lib ]; then
+	find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/lib64 ]; then
+	find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/bin ]; then
+	find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/sbin ]; then
+	find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+touch doclist.lst
+if [ -d usr/share/man ]; then
+	find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
+fi
+popd
+mv %{buildroot}/filelist.lst .
+mv %{buildroot}/doclist.lst .
+
+%files -n python3-CIpipe -f filelist.lst
+%dir %{python3_sitelib}/*
+
+%files help -f doclist.lst
+%{_docdir}/*
+
+%changelog
+* Wed Apr 12 2023 Python_Bot <Python_Bot@openeuler.org> - 1.149-1
+- Package Spec generated
diff --git a/sources b/sources
new file mode 100644
index 0000000..8e5cdcc
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+355f3cf1f345f52c1896ac8c4216dbaa  CIpipe-1.149.tar.gz