automatic import of python-deepcell-tracking

3 files changed, 224 insertions, 0 deletions

diff --git a/.gitignore b/.gitignore
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+/DeepCell_Tracking-0.6.4.tar.gz
diff --git a/python-deepcell-tracking.spec b/python-deepcell-tracking.spec
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+%global _empty_manifest_terminate_build 0
+Name:		python-DeepCell-Tracking
+Version:	0.6.4
+Release:	1
+Summary:	Tracking cells and lineage with deep learning.
+License:	LICENSE
+URL:		https://github.com/vanvalenlab/deepcell-tracking
+Source0:	https://mirrors.nju.edu.cn/pypi/web/packages/2a/4f/6a773227856fd11c4a0b9a00f014c487329b87222c1874012b43c611c0f3/DeepCell_Tracking-0.6.4.tar.gz
+BuildArch:	noarch
+
+
+%description
+# ![DeepCell Tracking Banner](https://raw.githubusercontent.com/vanvalenlab/deepcell-tracking/master/docs/images/DeepCell_tracking_Banner.png)
+
+[![PyPI version](https://badge.fury.io/py/DeepCell-Tracking.svg)](https://badge.fury.io/py/DeepCell-Tracking)
+[![Build Status](https://github.com/vanvalenlab/deepcell-tracking/workflows/build/badge.svg)](https://github.com/vanvalenlab/deepcell-tracking/actions)
+[![Coverage Status](https://coveralls.io/repos/github/vanvalenlab/deepcell-tracking/badge.svg?branch=master)](https://coveralls.io/github/vanvalenlab/deepcell-tracking?branch=master)
+
+`deepcell-tracking` uses deep learning models from [deepcell-tf](https://github.com/vanvalenlab/deepcell-tf) within an assignment problem framework to [track cells through time-lapse sequences](https://www.biorxiv.org/content/10.1101/803205v2) and build cell lineages. The assignment problem is solved using the [Hungarian algorithm.](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2747604/)
+
+## Getting Started
+
+`deepcell-tracking` is a Python package that can be installed with `pip`:
+
+```bash
+pip install deepcell-tracking
+```
+
+Or it can be installed from source:
+
+```bash
+git clone https://github.com/vanvalenlab/deepcell-tracking.git
+
+cd deepcell-tracking
+
+# install the dependencies
+pip install .
+```
+
+## How to Use
+
+```python
+from deepcell_tracking import CellTracker
+
+# X and y are the time-sequence data and their corresponding segmentations (labels), respectively.
+# model is a deepcell-tf tracking model.
+tracker = CellTracker(X, y, model)
+
+tracker.track_cells()  # runs in place, builds tracks
+
+# Save all tracked data and lineage files to a .trk file
+tracker.dump('./results.trk')
+
+# Open the track file
+from deepcell_tracking.utils import load_trks
+
+data = load_trks('./results.trk')
+
+lineage = data['lineages']  # linage information
+X = data['X']  # raw X data
+y = data['y']  # tracked y data
+```
+
+
+%package -n python3-DeepCell-Tracking
+Summary:	Tracking cells and lineage with deep learning.
+Provides:	python-DeepCell-Tracking
+BuildRequires:	python3-devel
+BuildRequires:	python3-setuptools
+BuildRequires:	python3-pip
+%description -n python3-DeepCell-Tracking
+# ![DeepCell Tracking Banner](https://raw.githubusercontent.com/vanvalenlab/deepcell-tracking/master/docs/images/DeepCell_tracking_Banner.png)
+
+[![PyPI version](https://badge.fury.io/py/DeepCell-Tracking.svg)](https://badge.fury.io/py/DeepCell-Tracking)
+[![Build Status](https://github.com/vanvalenlab/deepcell-tracking/workflows/build/badge.svg)](https://github.com/vanvalenlab/deepcell-tracking/actions)
+[![Coverage Status](https://coveralls.io/repos/github/vanvalenlab/deepcell-tracking/badge.svg?branch=master)](https://coveralls.io/github/vanvalenlab/deepcell-tracking?branch=master)
+
+`deepcell-tracking` uses deep learning models from [deepcell-tf](https://github.com/vanvalenlab/deepcell-tf) within an assignment problem framework to [track cells through time-lapse sequences](https://www.biorxiv.org/content/10.1101/803205v2) and build cell lineages. The assignment problem is solved using the [Hungarian algorithm.](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2747604/)
+
+## Getting Started
+
+`deepcell-tracking` is a Python package that can be installed with `pip`:
+
+```bash
+pip install deepcell-tracking
+```
+
+Or it can be installed from source:
+
+```bash
+git clone https://github.com/vanvalenlab/deepcell-tracking.git
+
+cd deepcell-tracking
+
+# install the dependencies
+pip install .
+```
+
+## How to Use
+
+```python
+from deepcell_tracking import CellTracker
+
+# X and y are the time-sequence data and their corresponding segmentations (labels), respectively.
+# model is a deepcell-tf tracking model.
+tracker = CellTracker(X, y, model)
+
+tracker.track_cells()  # runs in place, builds tracks
+
+# Save all tracked data and lineage files to a .trk file
+tracker.dump('./results.trk')
+
+# Open the track file
+from deepcell_tracking.utils import load_trks
+
+data = load_trks('./results.trk')
+
+lineage = data['lineages']  # linage information
+X = data['X']  # raw X data
+y = data['y']  # tracked y data
+```
+
+
+%package help
+Summary:	Development documents and examples for DeepCell-Tracking
+Provides:	python3-DeepCell-Tracking-doc
+%description help
+# ![DeepCell Tracking Banner](https://raw.githubusercontent.com/vanvalenlab/deepcell-tracking/master/docs/images/DeepCell_tracking_Banner.png)
+
+[![PyPI version](https://badge.fury.io/py/DeepCell-Tracking.svg)](https://badge.fury.io/py/DeepCell-Tracking)
+[![Build Status](https://github.com/vanvalenlab/deepcell-tracking/workflows/build/badge.svg)](https://github.com/vanvalenlab/deepcell-tracking/actions)
+[![Coverage Status](https://coveralls.io/repos/github/vanvalenlab/deepcell-tracking/badge.svg?branch=master)](https://coveralls.io/github/vanvalenlab/deepcell-tracking?branch=master)
+
+`deepcell-tracking` uses deep learning models from [deepcell-tf](https://github.com/vanvalenlab/deepcell-tf) within an assignment problem framework to [track cells through time-lapse sequences](https://www.biorxiv.org/content/10.1101/803205v2) and build cell lineages. The assignment problem is solved using the [Hungarian algorithm.](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2747604/)
+
+## Getting Started
+
+`deepcell-tracking` is a Python package that can be installed with `pip`:
+
+```bash
+pip install deepcell-tracking
+```
+
+Or it can be installed from source:
+
+```bash
+git clone https://github.com/vanvalenlab/deepcell-tracking.git
+
+cd deepcell-tracking
+
+# install the dependencies
+pip install .
+```
+
+## How to Use
+
+```python
+from deepcell_tracking import CellTracker
+
+# X and y are the time-sequence data and their corresponding segmentations (labels), respectively.
+# model is a deepcell-tf tracking model.
+tracker = CellTracker(X, y, model)
+
+tracker.track_cells()  # runs in place, builds tracks
+
+# Save all tracked data and lineage files to a .trk file
+tracker.dump('./results.trk')
+
+# Open the track file
+from deepcell_tracking.utils import load_trks
+
+data = load_trks('./results.trk')
+
+lineage = data['lineages']  # linage information
+X = data['X']  # raw X data
+y = data['y']  # tracked y data
+```
+
+
+%prep
+%autosetup -n DeepCell-Tracking-0.6.4
+
+%build
+%py3_build
+
+%install
+%py3_install
+install -d -m755 %{buildroot}/%{_pkgdocdir}
+if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
+if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
+if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
+if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
+pushd %{buildroot}
+if [ -d usr/lib ]; then
+	find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/lib64 ]; then
+	find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/bin ]; then
+	find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/sbin ]; then
+	find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+touch doclist.lst
+if [ -d usr/share/man ]; then
+	find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
+fi
+popd
+mv %{buildroot}/filelist.lst .
+mv %{buildroot}/doclist.lst .
+
+%files -n python3-DeepCell-Tracking -f filelist.lst
+%dir %{python3_sitelib}/*
+
+%files help -f doclist.lst
+%{_docdir}/*
+
+%changelog
+* Wed May 17 2023 Python_Bot <Python_Bot@openeuler.org> - 0.6.4-1
+- Package Spec generated
diff --git a/sources b/sources
new file mode 100644
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--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+cf37567ad9ce94b468a36e798ed9f240  DeepCell_Tracking-0.6.4.tar.gz