From 223b23cf4cbb83e2f2631081286286f1af860b9f Mon Sep 17 00:00:00 2001 From: CoprDistGit Date: Tue, 20 Jun 2023 06:53:53 +0000 Subject: automatic import of python-extaxsi --- .gitignore | 1 + python-extaxsi.spec | 156 ++++++++++++++++++++++++++++++++++++++++++++++++++++ sources | 1 + 3 files changed, 158 insertions(+) create mode 100644 python-extaxsi.spec create mode 100644 sources diff --git a/.gitignore b/.gitignore index e69de29..7f4f8d2 100644 --- a/.gitignore +++ b/.gitignore @@ -0,0 +1 @@ +/extaxsi-0.3.9.tar.gz diff --git a/python-extaxsi.spec b/python-extaxsi.spec new file mode 100644 index 0000000..b1b5ab0 --- /dev/null +++ b/python-extaxsi.spec @@ -0,0 +1,156 @@ +%global _empty_manifest_terminate_build 0 +Name: python-extaxsi +Version: 0.3.9 +Release: 1 +Summary: Extaxsi is a bioinformatic library aimed to elaborate and visualize molecular and taxonomic informations +License: MIT +URL: https://github.com/user/extaxsi +Source0: https://mirrors.aliyun.com/pypi/web/packages/e9/0e/cffc18266d0c7812b68493ba71e0399885c145feb426cce437387e901601/extaxsi-0.3.9.tar.gz +BuildArch: noarch + + +%description +ExTaxsI functions + + +Library overview + + +ExTaxsI functions can be used separately from the ExTaxsI tool. In general, there are 6 main functions for the following tasks: + + + +* load_configurations() - **mandatory before using ExTaxsi functions** - setting NCBI API key to allow data query + +* db_creation() - create FASTA, accession with taxonomy or enriched database + +* taxonomyID_converter() - convert taxid into organism taxonomy and viceversa + +* sunburst_plot() - create sunburst plot + +* scatterplot() - create scatterplot + +* worldmap_plot() - create worldmap plot + + +In the [github](https://github.com/qLSLab/ExTaxsI/blob/master/library/functions_installation_and_tutorial.ipynb) notebook installation and tutorials for configuration and usage are provided. + +Input files used are available in the **examples** directory. + + + For any doubt, please write to g.agostinetto@campus.unimib.it + +%package -n python3-extaxsi +Summary: Extaxsi is a bioinformatic library aimed to elaborate and visualize molecular and taxonomic informations +Provides: python-extaxsi +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-extaxsi +ExTaxsI functions + + +Library overview + + +ExTaxsI functions can be used separately from the ExTaxsI tool. In general, there are 6 main functions for the following tasks: + + + +* load_configurations() - **mandatory before using ExTaxsi functions** - setting NCBI API key to allow data query + +* db_creation() - create FASTA, accession with taxonomy or enriched database + +* taxonomyID_converter() - convert taxid into organism taxonomy and viceversa + +* sunburst_plot() - create sunburst plot + +* scatterplot() - create scatterplot + +* worldmap_plot() - create worldmap plot + + +In the [github](https://github.com/qLSLab/ExTaxsI/blob/master/library/functions_installation_and_tutorial.ipynb) notebook installation and tutorials for configuration and usage are provided. + +Input files used are available in the **examples** directory. + + + For any doubt, please write to g.agostinetto@campus.unimib.it + +%package help +Summary: Development documents and examples for extaxsi +Provides: python3-extaxsi-doc +%description help +ExTaxsI functions + + +Library overview + + +ExTaxsI functions can be used separately from the ExTaxsI tool. In general, there are 6 main functions for the following tasks: + + + +* load_configurations() - **mandatory before using ExTaxsi functions** - setting NCBI API key to allow data query + +* db_creation() - create FASTA, accession with taxonomy or enriched database + +* taxonomyID_converter() - convert taxid into organism taxonomy and viceversa + +* sunburst_plot() - create sunburst plot + +* scatterplot() - create scatterplot + +* worldmap_plot() - create worldmap plot + + +In the [github](https://github.com/qLSLab/ExTaxsI/blob/master/library/functions_installation_and_tutorial.ipynb) notebook installation and tutorials for configuration and usage are provided. + +Input files used are available in the **examples** directory. + + + For any doubt, please write to g.agostinetto@campus.unimib.it + +%prep +%autosetup -n extaxsi-0.3.9 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-extaxsi -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Tue Jun 20 2023 Python_Bot - 0.3.9-1 +- Package Spec generated diff --git a/sources b/sources new file mode 100644 index 0000000..f631841 --- /dev/null +++ b/sources @@ -0,0 +1 @@ +2e3ee4f6a2682732a545141e399c5293 extaxsi-0.3.9.tar.gz -- cgit v1.2.3