diff options
| author | CoprDistGit <infra@openeuler.org> | 2023-04-11 20:22:07 +0000 |
|---|---|---|
| committer | CoprDistGit <infra@openeuler.org> | 2023-04-11 20:22:07 +0000 |
| commit | 3abff0add08551e7ce85b037ef6ff2cca5ab0609 (patch) | |
| tree | f9064b9ae6aa1c21e50eaa595adba1c06c2560a7 /python-fastobo.spec | |
| parent | 5cfff1aa6f48508f2d39f40847a84545e735a8b9 (diff) | |
automatic import of python-fastobo
Diffstat (limited to 'python-fastobo.spec')
| -rw-r--r-- | python-fastobo.spec | 332 |
1 files changed, 332 insertions, 0 deletions
diff --git a/python-fastobo.spec b/python-fastobo.spec new file mode 100644 index 0000000..a0c5601 --- /dev/null +++ b/python-fastobo.spec @@ -0,0 +1,332 @@ +%global _empty_manifest_terminate_build 0 +Name: python-fastobo +Version: 0.12.2 +Release: 1 +Summary: Faultless AST for Open Biomedical Ontologies in Python. +License: MIT +URL: https://github.com/fastobo/fastobo-py +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/a7/45/807969ee86218115b54aae7ced45d1439ddc60a05a89f3812db179f168a0/fastobo-0.12.2.tar.gz + + +%description +# `fastobo-py` [](https://github.com/fastobo/fastobo-py/stargazers)
+
+*Faultless AST for Open Biomedical Ontologies in Python.*
+
+[](https://github.com/fastobo/fastobo-py/actions)
+[](https://ci.appveyor.com/project/althonos/fastobo-py)
+[](https://codecov.io/gh/fastobo/fastobo-py)
+[](https://choosealicense.com/licenses/mit/)
+[](https://github.com/fastobo/fastobo-py/)
+[](https://pypi.org/project/fastobo)
+[](https://pypi.org/project/fastobo/#files)
+[](https://anaconda.org/bioconda/fastobo)
+[](https://pypi.org/project/fastobo/#files)
+[](https://pypi.org/project/fastobo/#files)
+[](https://github.com/fastobo/fastobo-py/blob/master/CHANGELOG.md)
+[](https://fastobo.readthedocs.io/)
+[](https://github.com/fastobo/fastobo-py/issues)
+[](https://f1000research.com/posters/8-1500)
+[](https://pepy.tech/project/fastobo)
+
+
+## Overview
+
+[`fastobo`](https://crates.io/crates/fastobo) is a Rust library implementing a
+reliable parser for the OBO file format 1.4. This extension module exports
+idiomatic Python bindings that can be used to load, edit and serialize ontologies
+in the OBO format.
+
+
+## Installation
+
+If your platform has no pre-built binaries available, you will need to have the Rust
+compiler installed. See the [documentation on `rust-lang.org`](https://forge.rust-lang.org/other-installation-methods.html)
+to learn how to install Rust on your machine.
+
+Installation is then supported through `pip`:
+```console
+$ pip install fastobo --user
+```
+
+
+## Usage
+
+An `OboDoc` instance can be instantiated from a path or from a binary file handle
+using the `fastobo.load` function, or from a string using the `fastobo.loads` function.
+
+```python
+import fastobo
+obodoc = fastobo.load("../data/ms.obo")
+```
+
+Loading from a `gzip` file is supported:
+```python
+import fastobo
+import gzip
+gzdoc = fastobo.load(gzip.open("../data/cl.obo.gz"))
+```
+
+*Comments can be parsed but neither edited nor serialized, because of a limitation
+with `pyo3` (the library used to generate the Python bindings). They are supported
+in the Rust version of `fastobo`.*
+
+## Feedback
+
+Found a bug ? Have an enhancement request ? Head over to the
+[GitHub issue tracker](https://github.com/fastobo/fastobo-py/issues) of the project if
+you need to report or ask something. If you are filling in on a bug, please include as much
+information as you can about the issue, and try to recreate the same bug in a simple, easily
+reproducible situation.
+
+The following people have contributed to this project:
+
+- Alex Henrie ([@alexhenrie](https://github.com/alexhenrie))
+- Patrick Kalita ([@pkalita-lbl](https://github.com/pkalita-lbl))
+
+
+## About
+
+This project was developed by [Martin Larralde](https://github.com/althonos)
+as part of a Master's Degree internship in the [BBOP team](http://berkeleybop.org/) of the
+[Lawrence Berkeley National Laboratory](https://www.lbl.gov/), under the supervision of
+[Chris Mungall](http://biosciences.lbl.gov/profiles/chris-mungall/). Cite this project as:
+
+*Larralde M.* **Developing Python and Rust libraries to improve the ontology ecosystem**
+*\[version 1; not peer reviewed\].* F1000Research 2019, 8(ISCB Comm J):1500 (poster)
+([https://doi.org/10.7490/f1000research.1117405.1](https://doi.org/10.7490/f1000research.1117405.1))
+ + +%package -n python3-fastobo +Summary: Faultless AST for Open Biomedical Ontologies in Python. +Provides: python-fastobo +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +BuildRequires: python3-cffi +BuildRequires: gcc +BuildRequires: gdb +%description -n python3-fastobo +# `fastobo-py` [](https://github.com/fastobo/fastobo-py/stargazers)
+
+*Faultless AST for Open Biomedical Ontologies in Python.*
+
+[](https://github.com/fastobo/fastobo-py/actions)
+[](https://ci.appveyor.com/project/althonos/fastobo-py)
+[](https://codecov.io/gh/fastobo/fastobo-py)
+[](https://choosealicense.com/licenses/mit/)
+[](https://github.com/fastobo/fastobo-py/)
+[](https://pypi.org/project/fastobo)
+[](https://pypi.org/project/fastobo/#files)
+[](https://anaconda.org/bioconda/fastobo)
+[](https://pypi.org/project/fastobo/#files)
+[](https://pypi.org/project/fastobo/#files)
+[](https://github.com/fastobo/fastobo-py/blob/master/CHANGELOG.md)
+[](https://fastobo.readthedocs.io/)
+[](https://github.com/fastobo/fastobo-py/issues)
+[](https://f1000research.com/posters/8-1500)
+[](https://pepy.tech/project/fastobo)
+
+
+## Overview
+
+[`fastobo`](https://crates.io/crates/fastobo) is a Rust library implementing a
+reliable parser for the OBO file format 1.4. This extension module exports
+idiomatic Python bindings that can be used to load, edit and serialize ontologies
+in the OBO format.
+
+
+## Installation
+
+If your platform has no pre-built binaries available, you will need to have the Rust
+compiler installed. See the [documentation on `rust-lang.org`](https://forge.rust-lang.org/other-installation-methods.html)
+to learn how to install Rust on your machine.
+
+Installation is then supported through `pip`:
+```console
+$ pip install fastobo --user
+```
+
+
+## Usage
+
+An `OboDoc` instance can be instantiated from a path or from a binary file handle
+using the `fastobo.load` function, or from a string using the `fastobo.loads` function.
+
+```python
+import fastobo
+obodoc = fastobo.load("../data/ms.obo")
+```
+
+Loading from a `gzip` file is supported:
+```python
+import fastobo
+import gzip
+gzdoc = fastobo.load(gzip.open("../data/cl.obo.gz"))
+```
+
+*Comments can be parsed but neither edited nor serialized, because of a limitation
+with `pyo3` (the library used to generate the Python bindings). They are supported
+in the Rust version of `fastobo`.*
+
+## Feedback
+
+Found a bug ? Have an enhancement request ? Head over to the
+[GitHub issue tracker](https://github.com/fastobo/fastobo-py/issues) of the project if
+you need to report or ask something. If you are filling in on a bug, please include as much
+information as you can about the issue, and try to recreate the same bug in a simple, easily
+reproducible situation.
+
+The following people have contributed to this project:
+
+- Alex Henrie ([@alexhenrie](https://github.com/alexhenrie))
+- Patrick Kalita ([@pkalita-lbl](https://github.com/pkalita-lbl))
+
+
+## About
+
+This project was developed by [Martin Larralde](https://github.com/althonos)
+as part of a Master's Degree internship in the [BBOP team](http://berkeleybop.org/) of the
+[Lawrence Berkeley National Laboratory](https://www.lbl.gov/), under the supervision of
+[Chris Mungall](http://biosciences.lbl.gov/profiles/chris-mungall/). Cite this project as:
+
+*Larralde M.* **Developing Python and Rust libraries to improve the ontology ecosystem**
+*\[version 1; not peer reviewed\].* F1000Research 2019, 8(ISCB Comm J):1500 (poster)
+([https://doi.org/10.7490/f1000research.1117405.1](https://doi.org/10.7490/f1000research.1117405.1))
+ + +%package help +Summary: Development documents and examples for fastobo +Provides: python3-fastobo-doc +%description help +# `fastobo-py` [](https://github.com/fastobo/fastobo-py/stargazers)
+
+*Faultless AST for Open Biomedical Ontologies in Python.*
+
+[](https://github.com/fastobo/fastobo-py/actions)
+[](https://ci.appveyor.com/project/althonos/fastobo-py)
+[](https://codecov.io/gh/fastobo/fastobo-py)
+[](https://choosealicense.com/licenses/mit/)
+[](https://github.com/fastobo/fastobo-py/)
+[](https://pypi.org/project/fastobo)
+[](https://pypi.org/project/fastobo/#files)
+[](https://anaconda.org/bioconda/fastobo)
+[](https://pypi.org/project/fastobo/#files)
+[](https://pypi.org/project/fastobo/#files)
+[](https://github.com/fastobo/fastobo-py/blob/master/CHANGELOG.md)
+[](https://fastobo.readthedocs.io/)
+[](https://github.com/fastobo/fastobo-py/issues)
+[](https://f1000research.com/posters/8-1500)
+[](https://pepy.tech/project/fastobo)
+
+
+## Overview
+
+[`fastobo`](https://crates.io/crates/fastobo) is a Rust library implementing a
+reliable parser for the OBO file format 1.4. This extension module exports
+idiomatic Python bindings that can be used to load, edit and serialize ontologies
+in the OBO format.
+
+
+## Installation
+
+If your platform has no pre-built binaries available, you will need to have the Rust
+compiler installed. See the [documentation on `rust-lang.org`](https://forge.rust-lang.org/other-installation-methods.html)
+to learn how to install Rust on your machine.
+
+Installation is then supported through `pip`:
+```console
+$ pip install fastobo --user
+```
+
+
+## Usage
+
+An `OboDoc` instance can be instantiated from a path or from a binary file handle
+using the `fastobo.load` function, or from a string using the `fastobo.loads` function.
+
+```python
+import fastobo
+obodoc = fastobo.load("../data/ms.obo")
+```
+
+Loading from a `gzip` file is supported:
+```python
+import fastobo
+import gzip
+gzdoc = fastobo.load(gzip.open("../data/cl.obo.gz"))
+```
+
+*Comments can be parsed but neither edited nor serialized, because of a limitation
+with `pyo3` (the library used to generate the Python bindings). They are supported
+in the Rust version of `fastobo`.*
+
+## Feedback
+
+Found a bug ? Have an enhancement request ? Head over to the
+[GitHub issue tracker](https://github.com/fastobo/fastobo-py/issues) of the project if
+you need to report or ask something. If you are filling in on a bug, please include as much
+information as you can about the issue, and try to recreate the same bug in a simple, easily
+reproducible situation.
+
+The following people have contributed to this project:
+
+- Alex Henrie ([@alexhenrie](https://github.com/alexhenrie))
+- Patrick Kalita ([@pkalita-lbl](https://github.com/pkalita-lbl))
+
+
+## About
+
+This project was developed by [Martin Larralde](https://github.com/althonos)
+as part of a Master's Degree internship in the [BBOP team](http://berkeleybop.org/) of the
+[Lawrence Berkeley National Laboratory](https://www.lbl.gov/), under the supervision of
+[Chris Mungall](http://biosciences.lbl.gov/profiles/chris-mungall/). Cite this project as:
+
+*Larralde M.* **Developing Python and Rust libraries to improve the ontology ecosystem**
+*\[version 1; not peer reviewed\].* F1000Research 2019, 8(ISCB Comm J):1500 (poster)
+([https://doi.org/10.7490/f1000research.1117405.1](https://doi.org/10.7490/f1000research.1117405.1))
+ + +%prep +%autosetup -n fastobo-0.12.2 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-fastobo -f filelist.lst +%dir %{python3_sitearch}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Tue Apr 11 2023 Python_Bot <Python_Bot@openeuler.org> - 0.12.2-1 +- Package Spec generated |