From 74fec3887e7118108f0d65b8dbd5050b4a189a6a Mon Sep 17 00:00:00 2001 From: CoprDistGit Date: Thu, 8 Jun 2023 21:37:54 +0000 Subject: automatic import of python-flowio --- .gitignore | 1 + python-flowio.spec | 249 +++++++++++++++++++++++++++++++++++++++++++++++++++++ sources | 1 + 3 files changed, 251 insertions(+) create mode 100644 python-flowio.spec create mode 100644 sources diff --git a/.gitignore b/.gitignore index e69de29..0134f56 100644 --- a/.gitignore +++ b/.gitignore @@ -0,0 +1 @@ +/FlowIO-1.2.1.tar.gz diff --git a/python-flowio.spec b/python-flowio.spec new file mode 100644 index 0000000..35f78da --- /dev/null +++ b/python-flowio.spec @@ -0,0 +1,249 @@ +%global _empty_manifest_terminate_build 0 +Name: python-FlowIO +Version: 1.2.1 +Release: 1 +Summary: FlowIO is a Python library for reading / writing Flow Cytometry Standard (FCS) files +License: BSD +URL: https://github.com/whitews/flowio +Source0: https://mirrors.aliyun.com/pypi/web/packages/c8/5c/345d2d4cb7fea50b8cdf64468ffbb5425315455dd20e48e8512b4ecd3e05/FlowIO-1.2.1.tar.gz +BuildArch: noarch + + +%description +# FlowIO + +[![PyPI license](https://img.shields.io/pypi/l/flowio.svg?colorB=dodgerblue)](https://pypi.python.org/pypi/flowio/) +[![PyPI pyversions](https://img.shields.io/pypi/pyversions/flowio.svg)](https://pypi.python.org/pypi/flowio/) +[![PyPI version](https://img.shields.io/pypi/v/flowio.svg?colorB=blue)](https://pypi.python.org/pypi/flowio/) +[![DOI](https://zenodo.org/badge/14634514.svg)](https://zenodo.org/badge/latestdoi/14634514) + + +[![Build & test (master)](https://github.com/whitews/FlowIO/actions/workflows/tests_master.yml/badge.svg)](https://github.com/whitews/FlowIO/actions/workflows/tests_master.yml) +[![Build & test (develop)](https://github.com/whitews/FlowIO/actions/workflows/tests_develop.yml/badge.svg)](https://github.com/whitews/FlowIO/actions/workflows/tests_develop.yml) +[![Coverage](https://codecov.io/gh/whitews/FlowIO/branch/master/graph/badge.svg)](https://codecov.io/gh/whitews/flowio) +[![Documentation Status](https://readthedocs.org/projects/flowio/badge/?version=latest)](https://flowio.readthedocs.io/en/latest/?badge=latest) + +## Overview + +FlowIO is a Python library for reading / writing Flow Cytometry Standard (FCS) +files, with zero external dependencies and is compatible with Python 3.7+. + +FlowIO retrieves event data exactly as it is encoded in the FCS file: as a +1-dimensional list without separating the events into channels or performing any preprocessing (e.g. applying gain). Metadata +stored in the FCS file is available as a dictionary via the 'text' attribute. Basic attributes +are also available for commonly accessed properties. For example, the channel count +can be used to easily convert the event data to a multi-column NumPy array: + +``` +import flowio +import numpy + +fcs_data = flowio.FlowData('example.fcs') +npy_data = numpy.reshape(fcs_data.events, (-1, fcs_data.channel_count)) +``` + +For higher level interaction with flow cytometry data, including GatingML and FlowJo 10 support, +see the related [FlowKit](https://github.com/whitews/FlowKit) project. + +## Installation + +The recommended way to install FlowIO is via the `pip` command: + +``` +pip install flowio +``` + +Or, if you prefer, you can install from the GitHub source: + +``` +git clone https://github.com/whitews/flowio +cd flowio +python setup.py install +``` + +## Documentation + +The FlowIO API documentation is available [on ReadTheDocs here](https://flowio.readthedocs.io/en/latest/?badge=latest). If you have any questions about FlowIO or find any bugs [please submit an issue to the GitHub repository here](https://github.com/whitews/FlowIO/issues/new/). + +### Changelogs + +[Changelogs for versions are available here](https://github.com/whitews/FlowIO/releases) + + + +%package -n python3-FlowIO +Summary: FlowIO is a Python library for reading / writing Flow Cytometry Standard (FCS) files +Provides: python-FlowIO +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-FlowIO +# FlowIO + +[![PyPI license](https://img.shields.io/pypi/l/flowio.svg?colorB=dodgerblue)](https://pypi.python.org/pypi/flowio/) +[![PyPI pyversions](https://img.shields.io/pypi/pyversions/flowio.svg)](https://pypi.python.org/pypi/flowio/) +[![PyPI version](https://img.shields.io/pypi/v/flowio.svg?colorB=blue)](https://pypi.python.org/pypi/flowio/) +[![DOI](https://zenodo.org/badge/14634514.svg)](https://zenodo.org/badge/latestdoi/14634514) + + +[![Build & test (master)](https://github.com/whitews/FlowIO/actions/workflows/tests_master.yml/badge.svg)](https://github.com/whitews/FlowIO/actions/workflows/tests_master.yml) +[![Build & test (develop)](https://github.com/whitews/FlowIO/actions/workflows/tests_develop.yml/badge.svg)](https://github.com/whitews/FlowIO/actions/workflows/tests_develop.yml) +[![Coverage](https://codecov.io/gh/whitews/FlowIO/branch/master/graph/badge.svg)](https://codecov.io/gh/whitews/flowio) +[![Documentation Status](https://readthedocs.org/projects/flowio/badge/?version=latest)](https://flowio.readthedocs.io/en/latest/?badge=latest) + +## Overview + +FlowIO is a Python library for reading / writing Flow Cytometry Standard (FCS) +files, with zero external dependencies and is compatible with Python 3.7+. + +FlowIO retrieves event data exactly as it is encoded in the FCS file: as a +1-dimensional list without separating the events into channels or performing any preprocessing (e.g. applying gain). Metadata +stored in the FCS file is available as a dictionary via the 'text' attribute. Basic attributes +are also available for commonly accessed properties. For example, the channel count +can be used to easily convert the event data to a multi-column NumPy array: + +``` +import flowio +import numpy + +fcs_data = flowio.FlowData('example.fcs') +npy_data = numpy.reshape(fcs_data.events, (-1, fcs_data.channel_count)) +``` + +For higher level interaction with flow cytometry data, including GatingML and FlowJo 10 support, +see the related [FlowKit](https://github.com/whitews/FlowKit) project. + +## Installation + +The recommended way to install FlowIO is via the `pip` command: + +``` +pip install flowio +``` + +Or, if you prefer, you can install from the GitHub source: + +``` +git clone https://github.com/whitews/flowio +cd flowio +python setup.py install +``` + +## Documentation + +The FlowIO API documentation is available [on ReadTheDocs here](https://flowio.readthedocs.io/en/latest/?badge=latest). If you have any questions about FlowIO or find any bugs [please submit an issue to the GitHub repository here](https://github.com/whitews/FlowIO/issues/new/). + +### Changelogs + +[Changelogs for versions are available here](https://github.com/whitews/FlowIO/releases) + + + +%package help +Summary: Development documents and examples for FlowIO +Provides: python3-FlowIO-doc +%description help +# FlowIO + +[![PyPI license](https://img.shields.io/pypi/l/flowio.svg?colorB=dodgerblue)](https://pypi.python.org/pypi/flowio/) +[![PyPI pyversions](https://img.shields.io/pypi/pyversions/flowio.svg)](https://pypi.python.org/pypi/flowio/) +[![PyPI version](https://img.shields.io/pypi/v/flowio.svg?colorB=blue)](https://pypi.python.org/pypi/flowio/) +[![DOI](https://zenodo.org/badge/14634514.svg)](https://zenodo.org/badge/latestdoi/14634514) + + +[![Build & test (master)](https://github.com/whitews/FlowIO/actions/workflows/tests_master.yml/badge.svg)](https://github.com/whitews/FlowIO/actions/workflows/tests_master.yml) +[![Build & test (develop)](https://github.com/whitews/FlowIO/actions/workflows/tests_develop.yml/badge.svg)](https://github.com/whitews/FlowIO/actions/workflows/tests_develop.yml) +[![Coverage](https://codecov.io/gh/whitews/FlowIO/branch/master/graph/badge.svg)](https://codecov.io/gh/whitews/flowio) +[![Documentation Status](https://readthedocs.org/projects/flowio/badge/?version=latest)](https://flowio.readthedocs.io/en/latest/?badge=latest) + +## Overview + +FlowIO is a Python library for reading / writing Flow Cytometry Standard (FCS) +files, with zero external dependencies and is compatible with Python 3.7+. + +FlowIO retrieves event data exactly as it is encoded in the FCS file: as a +1-dimensional list without separating the events into channels or performing any preprocessing (e.g. applying gain). Metadata +stored in the FCS file is available as a dictionary via the 'text' attribute. Basic attributes +are also available for commonly accessed properties. For example, the channel count +can be used to easily convert the event data to a multi-column NumPy array: + +``` +import flowio +import numpy + +fcs_data = flowio.FlowData('example.fcs') +npy_data = numpy.reshape(fcs_data.events, (-1, fcs_data.channel_count)) +``` + +For higher level interaction with flow cytometry data, including GatingML and FlowJo 10 support, +see the related [FlowKit](https://github.com/whitews/FlowKit) project. + +## Installation + +The recommended way to install FlowIO is via the `pip` command: + +``` +pip install flowio +``` + +Or, if you prefer, you can install from the GitHub source: + +``` +git clone https://github.com/whitews/flowio +cd flowio +python setup.py install +``` + +## Documentation + +The FlowIO API documentation is available [on ReadTheDocs here](https://flowio.readthedocs.io/en/latest/?badge=latest). If you have any questions about FlowIO or find any bugs [please submit an issue to the GitHub repository here](https://github.com/whitews/FlowIO/issues/new/). + +### Changelogs + +[Changelogs for versions are available here](https://github.com/whitews/FlowIO/releases) + + + +%prep +%autosetup -n FlowIO-1.2.1 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-FlowIO -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Thu Jun 08 2023 Python_Bot - 1.2.1-1 +- Package Spec generated diff --git a/sources b/sources new file mode 100644 index 0000000..c324275 --- /dev/null +++ b/sources @@ -0,0 +1 @@ +1dd900600cdf5b0f421788ac7ce34452 FlowIO-1.2.1.tar.gz -- cgit v1.2.3