From 35ad35a5de77255fcf345b1a22ad087659ce60b6 Mon Sep 17 00:00:00 2001 From: CoprDistGit Date: Mon, 15 May 2023 04:13:56 +0000 Subject: automatic import of python-gencove --- .gitignore | 1 + python-gencove.spec | 206 ++++++++++++++++++++++++++++++++++++++++++++++++++++ sources | 1 + 3 files changed, 208 insertions(+) create mode 100644 python-gencove.spec create mode 100644 sources diff --git a/.gitignore b/.gitignore index e69de29..dcf2672 100644 --- a/.gitignore +++ b/.gitignore @@ -0,0 +1 @@ +/gencove-2.4.6.tar.gz diff --git a/python-gencove.spec b/python-gencove.spec new file mode 100644 index 0000000..bc27ffd --- /dev/null +++ b/python-gencove.spec @@ -0,0 +1,206 @@ +%global _empty_manifest_terminate_build 0 +Name: python-gencove +Version: 2.4.6 +Release: 1 +Summary: Gencove API and CLI tool +License: Apache 2.0 +URL: http://docs.gencove.com +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/f7/ea/cc26982facf0256ec07ef600b435586e332c3ef451a2ff1168feccbcfb67/gencove-2.4.6.tar.gz +BuildArch: noarch + +Requires: python3-dateutil +Requires: python3-six +Requires: python3-Click +Requires: python3-requests +Requires: python3-boto3 +Requires: python3-progressbar2 +Requires: python3-backoff +Requires: python3-pydantic + +%description +# The Gencove CLI + +[![PyPI Latest Release](https://img.shields.io/pypi/v/gencove.svg)](https://pypi.org/project/gencove/) +[![License](https://img.shields.io/pypi/l/gencove.svg)](https://github.com/gncv/gencove-cli/blob/master/LICENSE) + +## What is Gencove? + +Gencove is a high-throughput, cost-effective platform for genome sequencing and analysis, enabling a wide array of genomics applications across industries. Furthermore, it is the only enterprise analytics platform for low-pass whole genome sequencing (lpWGS). + + +The Gencove command-line interface (CLI) can be used to easily access the Gencove platform. + +## Main Features + +It is most often used for: +* [Uploading FASTQ files](https://docs.gencove.com/main/the-gencove-cli/#uploading-fastq-files) for analysis +* [Downloading analysis results](https://docs.gencove.com/main/the-gencove-cli/#downloading-deliverables) which include the following: + * Sequence (`.fastq.gz`) + * Alignment (`.bam`, `.bai`) + * Imputation (`.vcf.gz`, `.vcf.gz.tbi`, `.vcf.gz.csi`) +* [Assigning metadata](https://docs.gencove.com/main/the-gencove-cli/#assigning-sample-metadata) to Gencove samples + +Before filing a bug report, please refer to the following [link](https://docs.gencove.com/main/the-gencove-cli/#filing-a-bug-report-for-the-cli). Bugs should be reported [here](https://resources.gencove.com/hc/en-us/requests/new). + +## Installation +``` +# install via PyPI +pip install gencove + +# updating to latest version +pip install -U gencove +``` + +## Documentation + +Online documentation (with examples) is available at [docs.gencove.com](https://docs.gencove.com/main/introduction/) + +API reference for publicly available endpoints: [API Reference](https://api.gencove.com/api/v2/docs/) + +Comprehensive CLI Documentation available: [CLI Reference](https://docs.gencove.com/cli/) + + + + +%package -n python3-gencove +Summary: Gencove API and CLI tool +Provides: python-gencove +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-gencove +# The Gencove CLI + +[![PyPI Latest Release](https://img.shields.io/pypi/v/gencove.svg)](https://pypi.org/project/gencove/) +[![License](https://img.shields.io/pypi/l/gencove.svg)](https://github.com/gncv/gencove-cli/blob/master/LICENSE) + +## What is Gencove? + +Gencove is a high-throughput, cost-effective platform for genome sequencing and analysis, enabling a wide array of genomics applications across industries. Furthermore, it is the only enterprise analytics platform for low-pass whole genome sequencing (lpWGS). + + +The Gencove command-line interface (CLI) can be used to easily access the Gencove platform. + +## Main Features + +It is most often used for: +* [Uploading FASTQ files](https://docs.gencove.com/main/the-gencove-cli/#uploading-fastq-files) for analysis +* [Downloading analysis results](https://docs.gencove.com/main/the-gencove-cli/#downloading-deliverables) which include the following: + * Sequence (`.fastq.gz`) + * Alignment (`.bam`, `.bai`) + * Imputation (`.vcf.gz`, `.vcf.gz.tbi`, `.vcf.gz.csi`) +* [Assigning metadata](https://docs.gencove.com/main/the-gencove-cli/#assigning-sample-metadata) to Gencove samples + +Before filing a bug report, please refer to the following [link](https://docs.gencove.com/main/the-gencove-cli/#filing-a-bug-report-for-the-cli). Bugs should be reported [here](https://resources.gencove.com/hc/en-us/requests/new). + +## Installation +``` +# install via PyPI +pip install gencove + +# updating to latest version +pip install -U gencove +``` + +## Documentation + +Online documentation (with examples) is available at [docs.gencove.com](https://docs.gencove.com/main/introduction/) + +API reference for publicly available endpoints: [API Reference](https://api.gencove.com/api/v2/docs/) + +Comprehensive CLI Documentation available: [CLI Reference](https://docs.gencove.com/cli/) + + + + +%package help +Summary: Development documents and examples for gencove +Provides: python3-gencove-doc +%description help +# The Gencove CLI + +[![PyPI Latest Release](https://img.shields.io/pypi/v/gencove.svg)](https://pypi.org/project/gencove/) +[![License](https://img.shields.io/pypi/l/gencove.svg)](https://github.com/gncv/gencove-cli/blob/master/LICENSE) + +## What is Gencove? + +Gencove is a high-throughput, cost-effective platform for genome sequencing and analysis, enabling a wide array of genomics applications across industries. Furthermore, it is the only enterprise analytics platform for low-pass whole genome sequencing (lpWGS). + + +The Gencove command-line interface (CLI) can be used to easily access the Gencove platform. + +## Main Features + +It is most often used for: +* [Uploading FASTQ files](https://docs.gencove.com/main/the-gencove-cli/#uploading-fastq-files) for analysis +* [Downloading analysis results](https://docs.gencove.com/main/the-gencove-cli/#downloading-deliverables) which include the following: + * Sequence (`.fastq.gz`) + * Alignment (`.bam`, `.bai`) + * Imputation (`.vcf.gz`, `.vcf.gz.tbi`, `.vcf.gz.csi`) +* [Assigning metadata](https://docs.gencove.com/main/the-gencove-cli/#assigning-sample-metadata) to Gencove samples + +Before filing a bug report, please refer to the following [link](https://docs.gencove.com/main/the-gencove-cli/#filing-a-bug-report-for-the-cli). Bugs should be reported [here](https://resources.gencove.com/hc/en-us/requests/new). + +## Installation +``` +# install via PyPI +pip install gencove + +# updating to latest version +pip install -U gencove +``` + +## Documentation + +Online documentation (with examples) is available at [docs.gencove.com](https://docs.gencove.com/main/introduction/) + +API reference for publicly available endpoints: [API Reference](https://api.gencove.com/api/v2/docs/) + +Comprehensive CLI Documentation available: [CLI Reference](https://docs.gencove.com/cli/) + + + + +%prep +%autosetup -n gencove-2.4.6 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-gencove -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Mon May 15 2023 Python_Bot - 2.4.6-1 +- Package Spec generated diff --git a/sources b/sources new file mode 100644 index 0000000..24f7ef2 --- /dev/null +++ b/sources @@ -0,0 +1 @@ +aaace626b3dfbffd4118e1d9fd6c03ed gencove-2.4.6.tar.gz -- cgit v1.2.3