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|
%global _empty_manifest_terminate_build 0
Name: python-gencove
Version: 2.4.7
Release: 1
Summary: Gencove API and CLI tool
License: Apache 2.0
URL: http://docs.gencove.com
Source0: https://mirrors.aliyun.com/pypi/web/packages/97/30/11f6f8bf814c2580e4eeebb241b53174601f5b118b3b8108bacf9fae1347/gencove-2.4.7.tar.gz
BuildArch: noarch
Requires: python3-dateutil
Requires: python3-six
Requires: python3-Click
Requires: python3-requests
Requires: python3-boto3
Requires: python3-progressbar2
Requires: python3-backoff
Requires: python3-pydantic
%description
# The Gencove CLI
[](https://pypi.org/project/gencove/)
[](https://github.com/gncv/gencove-cli/blob/master/LICENSE)
## What is Gencove?
Gencove is a high-throughput, cost-effective platform for genome sequencing and analysis, enabling a wide array of genomics applications across industries. Furthermore, it is the only enterprise analytics platform for low-pass whole genome sequencing (lpWGS).
The Gencove command-line interface (CLI) can be used to easily access the Gencove platform.
## Main Features
It is most often used for:
* [Uploading FASTQ files](https://docs.gencove.com/main/the-gencove-cli/#uploading-fastq-files) for analysis
* [Downloading analysis results](https://docs.gencove.com/main/the-gencove-cli/#downloading-deliverables) which include the following:
* Sequence (`.fastq.gz`)
* Alignment (`.bam`, `.bai`)
* Imputation (`.vcf.gz`, `.vcf.gz.tbi`, `.vcf.gz.csi`)
* [Assigning metadata](https://docs.gencove.com/main/the-gencove-cli/#assigning-sample-metadata) to Gencove samples
Before filing a bug report, please refer to the following [link](https://docs.gencove.com/main/the-gencove-cli/#filing-a-bug-report-for-the-cli). Bugs should be reported [here](https://resources.gencove.com/hc/en-us/requests/new).
## Installation
```
# install via PyPI
pip install gencove
# updating to latest version
pip install -U gencove
```
## Documentation
Online documentation (with examples) is available at [docs.gencove.com](https://docs.gencove.com/main/introduction/)
API reference for publicly available endpoints: [API Reference](https://api.gencove.com/api/v2/docs/)
Comprehensive CLI Documentation available: [CLI Reference](https://docs.gencove.com/cli/)
%package -n python3-gencove
Summary: Gencove API and CLI tool
Provides: python-gencove
BuildRequires: python3-devel
BuildRequires: python3-setuptools
BuildRequires: python3-pip
%description -n python3-gencove
# The Gencove CLI
[](https://pypi.org/project/gencove/)
[](https://github.com/gncv/gencove-cli/blob/master/LICENSE)
## What is Gencove?
Gencove is a high-throughput, cost-effective platform for genome sequencing and analysis, enabling a wide array of genomics applications across industries. Furthermore, it is the only enterprise analytics platform for low-pass whole genome sequencing (lpWGS).
The Gencove command-line interface (CLI) can be used to easily access the Gencove platform.
## Main Features
It is most often used for:
* [Uploading FASTQ files](https://docs.gencove.com/main/the-gencove-cli/#uploading-fastq-files) for analysis
* [Downloading analysis results](https://docs.gencove.com/main/the-gencove-cli/#downloading-deliverables) which include the following:
* Sequence (`.fastq.gz`)
* Alignment (`.bam`, `.bai`)
* Imputation (`.vcf.gz`, `.vcf.gz.tbi`, `.vcf.gz.csi`)
* [Assigning metadata](https://docs.gencove.com/main/the-gencove-cli/#assigning-sample-metadata) to Gencove samples
Before filing a bug report, please refer to the following [link](https://docs.gencove.com/main/the-gencove-cli/#filing-a-bug-report-for-the-cli). Bugs should be reported [here](https://resources.gencove.com/hc/en-us/requests/new).
## Installation
```
# install via PyPI
pip install gencove
# updating to latest version
pip install -U gencove
```
## Documentation
Online documentation (with examples) is available at [docs.gencove.com](https://docs.gencove.com/main/introduction/)
API reference for publicly available endpoints: [API Reference](https://api.gencove.com/api/v2/docs/)
Comprehensive CLI Documentation available: [CLI Reference](https://docs.gencove.com/cli/)
%package help
Summary: Development documents and examples for gencove
Provides: python3-gencove-doc
%description help
# The Gencove CLI
[](https://pypi.org/project/gencove/)
[](https://github.com/gncv/gencove-cli/blob/master/LICENSE)
## What is Gencove?
Gencove is a high-throughput, cost-effective platform for genome sequencing and analysis, enabling a wide array of genomics applications across industries. Furthermore, it is the only enterprise analytics platform for low-pass whole genome sequencing (lpWGS).
The Gencove command-line interface (CLI) can be used to easily access the Gencove platform.
## Main Features
It is most often used for:
* [Uploading FASTQ files](https://docs.gencove.com/main/the-gencove-cli/#uploading-fastq-files) for analysis
* [Downloading analysis results](https://docs.gencove.com/main/the-gencove-cli/#downloading-deliverables) which include the following:
* Sequence (`.fastq.gz`)
* Alignment (`.bam`, `.bai`)
* Imputation (`.vcf.gz`, `.vcf.gz.tbi`, `.vcf.gz.csi`)
* [Assigning metadata](https://docs.gencove.com/main/the-gencove-cli/#assigning-sample-metadata) to Gencove samples
Before filing a bug report, please refer to the following [link](https://docs.gencove.com/main/the-gencove-cli/#filing-a-bug-report-for-the-cli). Bugs should be reported [here](https://resources.gencove.com/hc/en-us/requests/new).
## Installation
```
# install via PyPI
pip install gencove
# updating to latest version
pip install -U gencove
```
## Documentation
Online documentation (with examples) is available at [docs.gencove.com](https://docs.gencove.com/main/introduction/)
API reference for publicly available endpoints: [API Reference](https://api.gencove.com/api/v2/docs/)
Comprehensive CLI Documentation available: [CLI Reference](https://docs.gencove.com/cli/)
%prep
%autosetup -n gencove-2.4.7
%build
%py3_build
%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .
%files -n python3-gencove -f filelist.lst
%dir %{python3_sitelib}/*
%files help -f doclist.lst
%{_docdir}/*
%changelog
* Thu Jun 08 2023 Python_Bot <Python_Bot@openeuler.org> - 2.4.7-1
- Package Spec generated
|
