automatic import of python-htseq

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diff --git a/.gitignore b/.gitignore
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+++ b/.gitignore
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+/HTSeq-2.0.2.tar.gz
diff --git a/python-htseq.spec b/python-htseq.spec
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+%global _empty_manifest_terminate_build 0
+Name:		python-HTSeq
+Version:	2.0.2
+Release:	1
+Summary:	A framework to process and analyze data from high-throughput sequencing (HTS) assays
+License:	GPL3
+URL:		https://github.com/htseq
+Source0:	https://mirrors.nju.edu.cn/pypi/web/packages/de/13/cbeb753eb29d31bb252bc18443e79a3739bf5bd3dbc99e65fcf13db81be1/HTSeq-2.0.2.tar.gz
+BuildArch:	noarch
+
+Requires:	python3-numpy
+Requires:	python3-pysam
+Requires:	python3-matplotlib
+Requires:	python3-scipy
+Requires:	python3-pytest
+Requires:	python3-pandas
+Requires:	python3-matplotlib
+
+%description
+![CI](https://github.com/htseq/htseq/workflows/CI/badge.svg)
+[![Documentation Status](https://readthedocs.org/projects/htseq/badge/?version=master)](https://htseq.readthedocs.io)
+
+# HTSeq
+**DEVS**: https://github.com/htseq/htseq
+
+**DOCS**: https://htseq.readthedocs.io
+
+**CITATION** (please cite this new paper!): Putri et al. Analysing high-throughput sequencing data in Python with HTSeq 2.0. Bioinformatics, btac166, [https://doi.org/10.1093/bioinformatics/btac166](https://doi.org/10.1093/bioinformatics/btac166) (2022).
+
+A Python library to facilitate programmatic analysis of data
+from high-throughput sequencing (HTS) experiments. A popular component of ``HTSeq``
+is ``htseq-count``, a script to quantify gene expression in bulk and single-cell RNA-Seq
+and similar experiments.
+
+## Requirements
+
+To use ``HTSeq`` you need:
+
+-  ``Python >= 3.7`` (**note**: ``Python 2.7`` support has been dropped)
+-  ``numpy``
+-  ``pysam``
+
+To manipulate BigWig files, you also need:
+
+- ``pyBigWig``
+
+To run the ``htseq-qa`` script, you also need:
+
+-  ``matplotlib``
+
+To run ``htseq-count`` and ``htseq-count-barcodes`` with custom output formats for the counts table, you need:
+
+- ``mtx`` file: ``scipy``
+- ``h5ad`` file: ``anndata``
+- ``loom`` file: ``loompy``
+
+Both **Linux** and **OSX** are supported and binaries are provided on Pypi. We
+would like to support **Windows** but currently lack the expertise to do so. If
+you would like to take on the Windows release and maintenance, please open an
+issue and we'll try to help.
+
+A source package which should not require ``Cython`` nor ``SWIG`` is also
+provided on Pypi.
+
+To **develop** `HTSeq` you will **also** need:
+
+-  ``Cython >=0.29.5``
+-  ``SWIG >=3.0.8``
+
+## Installation
+
+### PIP
+
+To install directly from PyPI:
+
+```bash
+pip install HTSeq
+```
+
+To install a specific version:
+
+```bash
+pip install 'HTSeq==2.0.0'
+```
+
+If this fails, please install all dependencies first:
+
+```bash
+pip install matplotlib
+pip install Cython
+pip install pysam
+pip install HTSeq
+```
+
+### setup.py (distutils/setuptools)
+
+Install the dependencies with your favourite tool (``pip``, ``conda``,
+etc.).
+
+To install ``HTSeq`` itself, run:
+
+```bash
+python setup.py build install
+```
+
+## Testing
+To test locally, run
+
+```bash
+./test.sh
+```
+
+To test `htseq-count` alone, run it with the `-o` option.
+
+A virtual environment is created in the `.venv` folder and `HTSeq` is installed inside it, including all modules and scripts.
+
+## Authors
+- 2021-: Givanna Putri ([ghar1821](https://github.com/ghar1821))
+- 2016-: Fabio Zanini ([iosonofabio](https://github.com/iosonofabio))@ https://fabilab.org
+- 2010-2015: Simon Anders ([simon-anders](https://github.com/simon-anders)), Wolfgang Huber
+
+
+
+
+%package -n python3-HTSeq
+Summary:	A framework to process and analyze data from high-throughput sequencing (HTS) assays
+Provides:	python-HTSeq
+BuildRequires:	python3-devel
+BuildRequires:	python3-setuptools
+BuildRequires:	python3-pip
+%description -n python3-HTSeq
+![CI](https://github.com/htseq/htseq/workflows/CI/badge.svg)
+[![Documentation Status](https://readthedocs.org/projects/htseq/badge/?version=master)](https://htseq.readthedocs.io)
+
+# HTSeq
+**DEVS**: https://github.com/htseq/htseq
+
+**DOCS**: https://htseq.readthedocs.io
+
+**CITATION** (please cite this new paper!): Putri et al. Analysing high-throughput sequencing data in Python with HTSeq 2.0. Bioinformatics, btac166, [https://doi.org/10.1093/bioinformatics/btac166](https://doi.org/10.1093/bioinformatics/btac166) (2022).
+
+A Python library to facilitate programmatic analysis of data
+from high-throughput sequencing (HTS) experiments. A popular component of ``HTSeq``
+is ``htseq-count``, a script to quantify gene expression in bulk and single-cell RNA-Seq
+and similar experiments.
+
+## Requirements
+
+To use ``HTSeq`` you need:
+
+-  ``Python >= 3.7`` (**note**: ``Python 2.7`` support has been dropped)
+-  ``numpy``
+-  ``pysam``
+
+To manipulate BigWig files, you also need:
+
+- ``pyBigWig``
+
+To run the ``htseq-qa`` script, you also need:
+
+-  ``matplotlib``
+
+To run ``htseq-count`` and ``htseq-count-barcodes`` with custom output formats for the counts table, you need:
+
+- ``mtx`` file: ``scipy``
+- ``h5ad`` file: ``anndata``
+- ``loom`` file: ``loompy``
+
+Both **Linux** and **OSX** are supported and binaries are provided on Pypi. We
+would like to support **Windows** but currently lack the expertise to do so. If
+you would like to take on the Windows release and maintenance, please open an
+issue and we'll try to help.
+
+A source package which should not require ``Cython`` nor ``SWIG`` is also
+provided on Pypi.
+
+To **develop** `HTSeq` you will **also** need:
+
+-  ``Cython >=0.29.5``
+-  ``SWIG >=3.0.8``
+
+## Installation
+
+### PIP
+
+To install directly from PyPI:
+
+```bash
+pip install HTSeq
+```
+
+To install a specific version:
+
+```bash
+pip install 'HTSeq==2.0.0'
+```
+
+If this fails, please install all dependencies first:
+
+```bash
+pip install matplotlib
+pip install Cython
+pip install pysam
+pip install HTSeq
+```
+
+### setup.py (distutils/setuptools)
+
+Install the dependencies with your favourite tool (``pip``, ``conda``,
+etc.).
+
+To install ``HTSeq`` itself, run:
+
+```bash
+python setup.py build install
+```
+
+## Testing
+To test locally, run
+
+```bash
+./test.sh
+```
+
+To test `htseq-count` alone, run it with the `-o` option.
+
+A virtual environment is created in the `.venv` folder and `HTSeq` is installed inside it, including all modules and scripts.
+
+## Authors
+- 2021-: Givanna Putri ([ghar1821](https://github.com/ghar1821))
+- 2016-: Fabio Zanini ([iosonofabio](https://github.com/iosonofabio))@ https://fabilab.org
+- 2010-2015: Simon Anders ([simon-anders](https://github.com/simon-anders)), Wolfgang Huber
+
+
+
+
+%package help
+Summary:	Development documents and examples for HTSeq
+Provides:	python3-HTSeq-doc
+%description help
+![CI](https://github.com/htseq/htseq/workflows/CI/badge.svg)
+[![Documentation Status](https://readthedocs.org/projects/htseq/badge/?version=master)](https://htseq.readthedocs.io)
+
+# HTSeq
+**DEVS**: https://github.com/htseq/htseq
+
+**DOCS**: https://htseq.readthedocs.io
+
+**CITATION** (please cite this new paper!): Putri et al. Analysing high-throughput sequencing data in Python with HTSeq 2.0. Bioinformatics, btac166, [https://doi.org/10.1093/bioinformatics/btac166](https://doi.org/10.1093/bioinformatics/btac166) (2022).
+
+A Python library to facilitate programmatic analysis of data
+from high-throughput sequencing (HTS) experiments. A popular component of ``HTSeq``
+is ``htseq-count``, a script to quantify gene expression in bulk and single-cell RNA-Seq
+and similar experiments.
+
+## Requirements
+
+To use ``HTSeq`` you need:
+
+-  ``Python >= 3.7`` (**note**: ``Python 2.7`` support has been dropped)
+-  ``numpy``
+-  ``pysam``
+
+To manipulate BigWig files, you also need:
+
+- ``pyBigWig``
+
+To run the ``htseq-qa`` script, you also need:
+
+-  ``matplotlib``
+
+To run ``htseq-count`` and ``htseq-count-barcodes`` with custom output formats for the counts table, you need:
+
+- ``mtx`` file: ``scipy``
+- ``h5ad`` file: ``anndata``
+- ``loom`` file: ``loompy``
+
+Both **Linux** and **OSX** are supported and binaries are provided on Pypi. We
+would like to support **Windows** but currently lack the expertise to do so. If
+you would like to take on the Windows release and maintenance, please open an
+issue and we'll try to help.
+
+A source package which should not require ``Cython`` nor ``SWIG`` is also
+provided on Pypi.
+
+To **develop** `HTSeq` you will **also** need:
+
+-  ``Cython >=0.29.5``
+-  ``SWIG >=3.0.8``
+
+## Installation
+
+### PIP
+
+To install directly from PyPI:
+
+```bash
+pip install HTSeq
+```
+
+To install a specific version:
+
+```bash
+pip install 'HTSeq==2.0.0'
+```
+
+If this fails, please install all dependencies first:
+
+```bash
+pip install matplotlib
+pip install Cython
+pip install pysam
+pip install HTSeq
+```
+
+### setup.py (distutils/setuptools)
+
+Install the dependencies with your favourite tool (``pip``, ``conda``,
+etc.).
+
+To install ``HTSeq`` itself, run:
+
+```bash
+python setup.py build install
+```
+
+## Testing
+To test locally, run
+
+```bash
+./test.sh
+```
+
+To test `htseq-count` alone, run it with the `-o` option.
+
+A virtual environment is created in the `.venv` folder and `HTSeq` is installed inside it, including all modules and scripts.
+
+## Authors
+- 2021-: Givanna Putri ([ghar1821](https://github.com/ghar1821))
+- 2016-: Fabio Zanini ([iosonofabio](https://github.com/iosonofabio))@ https://fabilab.org
+- 2010-2015: Simon Anders ([simon-anders](https://github.com/simon-anders)), Wolfgang Huber
+
+
+
+
+%prep
+%autosetup -n HTSeq-2.0.2
+
+%build
+%py3_build
+
+%install
+%py3_install
+install -d -m755 %{buildroot}/%{_pkgdocdir}
+if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
+if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
+if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
+if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
+pushd %{buildroot}
+if [ -d usr/lib ]; then
+	find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/lib64 ]; then
+	find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/bin ]; then
+	find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/sbin ]; then
+	find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+touch doclist.lst
+if [ -d usr/share/man ]; then
+	find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
+fi
+popd
+mv %{buildroot}/filelist.lst .
+mv %{buildroot}/doclist.lst .
+
+%files -n python3-HTSeq -f filelist.lst
+%dir %{python3_sitelib}/*
+
+%files help -f doclist.lst
+%{_docdir}/*
+
+%changelog
+* Tue Apr 11 2023 Python_Bot <Python_Bot@openeuler.org> - 2.0.2-1
+- Package Spec generated
diff --git a/sources b/sources
new file mode 100644
index 0000000..a360353
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+270bdb311dc25b8c604793551e026caf  HTSeq-2.0.2.tar.gz