From 59b4b42ca48c9c3c5871fa56d353aee87a8d0f9c Mon Sep 17 00:00:00 2001 From: CoprDistGit Date: Wed, 31 May 2023 05:34:38 +0000 Subject: automatic import of python-humann2 --- .gitignore | 1 + python-humann2.spec | 72 +++++++++++++++++++++++++++++++++++++++++++++++++++++ sources | 1 + 3 files changed, 74 insertions(+) create mode 100644 python-humann2.spec create mode 100644 sources diff --git a/.gitignore b/.gitignore index e69de29..70db018 100644 --- a/.gitignore +++ b/.gitignore @@ -0,0 +1 @@ +/humann2-2.8.2.tar.gz diff --git a/python-humann2.spec b/python-humann2.spec new file mode 100644 index 0000000..36caba8 --- /dev/null +++ b/python-humann2.spec @@ -0,0 +1,72 @@ +%global _empty_manifest_terminate_build 0 +Name: python-humann2 +Version: 2.8.2 +Release: 1 +Summary: HUMAnN2: The HMP Unified Metabolic Analysis Network 2 +License: MIT +URL: http://huttenhower.sph.harvard.edu/humann2 +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/58/e8/d64074e0c9e8d5cef5c3a430739831eb9930fc2c3647b6dbff70ccd5a953/humann2-2.8.2.tar.gz +BuildArch: noarch + + +%description +HUMAnN2 is a pipeline for efficiently and accurately determining the coverage and abundance of microbial pathways in a community from metagenomic data. Sequencing a metagenome typically produces millions of short DNA/RNA reads. This process, referred to as functional profiling, aims to describe the metabolic potential of a microbial community and its members. More generally, functional profiling answers the question: What are the microbes in my community-of-interest doing (or capable of doing)? + +%package -n python3-humann2 +Summary: HUMAnN2: The HMP Unified Metabolic Analysis Network 2 +Provides: python-humann2 +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-humann2 +HUMAnN2 is a pipeline for efficiently and accurately determining the coverage and abundance of microbial pathways in a community from metagenomic data. Sequencing a metagenome typically produces millions of short DNA/RNA reads. This process, referred to as functional profiling, aims to describe the metabolic potential of a microbial community and its members. More generally, functional profiling answers the question: What are the microbes in my community-of-interest doing (or capable of doing)? + +%package help +Summary: Development documents and examples for humann2 +Provides: python3-humann2-doc +%description help +HUMAnN2 is a pipeline for efficiently and accurately determining the coverage and abundance of microbial pathways in a community from metagenomic data. Sequencing a metagenome typically produces millions of short DNA/RNA reads. This process, referred to as functional profiling, aims to describe the metabolic potential of a microbial community and its members. More generally, functional profiling answers the question: What are the microbes in my community-of-interest doing (or capable of doing)? + +%prep +%autosetup -n humann2-2.8.2 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-humann2 -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Wed May 31 2023 Python_Bot - 2.8.2-1 +- Package Spec generated diff --git a/sources b/sources new file mode 100644 index 0000000..075547a --- /dev/null +++ b/sources @@ -0,0 +1 @@ +c91d66a58d571ced71bb2cddfa66048e humann2-2.8.2.tar.gz -- cgit v1.2.3