automatic import of python-hydra-genetics

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+/hydra-genetics-1.3.0.tar.gz
diff --git a/python-hydra-genetics.spec b/python-hydra-genetics.spec
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+%global _empty_manifest_terminate_build 0
+Name:		python-hydra-genetics
+Version:	1.3.0
+Release:	1
+Summary:	Helper tools for use with hydra-genetics pipelines.
+License:	GPL-3
+URL:		https://github.com/hydra-genetics/tools
+Source0:	https://mirrors.nju.edu.cn/pypi/web/packages/5e/04/3a92d9df734fc75a2ea670f9d74a2dcf45948657db2449871cac096ce3c9/hydra-genetics-1.3.0.tar.gz
+BuildArch:	noarch
+
+
+%description
+
+# <img src="images/hydragenetics.png" width=40 /> Hydra-genetics
+
+Command line interface to create new modules/pipelines or adding a new rule to an existing project. Provides libraries used to make it easier for people not used to pandas to extract information from samples and units dataframes. These dataframes are generated from [units.tsv](https://github.com/hydra-genetics/tools/blob/develop/hydra_genetics/pipeline-template/workflow/schemas/units.schema.yaml) and [samples.tsv](https://github.com/hydra-genetics/prealignment/blob/develop/workflow/schemas/samples.schema.yaml) files which are used as input.
+
+[![Lint and Test](https://github.com/hydra-genetics/tools/actions/workflows/main.yaml/badge.svg?branch=develop)](https://github.com/hydra-genetics/tools/actions/workflows/main.yaml)
+
+![python](https://img.shields.io/badge/python-3.8-blue)
+
+## Functions
+
+* create
+* reference
+
+
+Example of how to generate a new project
+```
+ virtualenv -p python3.9 venv
+ source venv/bin/activate
+ pip install hydra-genetics
+ hydra-genetics create-module -n snv -d "Collection of callers" -a "Patrik S" -e "p.s@mail.se" -g patrik -o snv
+ # Create new smk file named "samtools.smk" with rule "samtools_rule2"
+ hydra-genetics create-rule -c rule2 -t samtools -m snv -a test2 -e "test@test"
+ # Add command to "samtools smk" file, rule name will be "samtools_rule3"
+ hydra-genetics create-rule -c rule3 -t samtools -m snv -a test2 -e "test@test"
+
+ # -t/--tool can be skipped for a single command tool, ex a script
+ # this will create a smk file named "super_script.smk" with a rule "super_script"
+ hydra-genetics create-rule -c rule3 -t samtools -m snv -a test2 -e "test@test"
+
+ # Create input files
+ hydra-genetics create-input-files -d path/dir1 -d path/dir2
+
+ # Create singularity cache
+ # all container specified in config.yaml will be fetched
+ hydra-genetics singularity create-singularity-files  -o singularity_cache -c config.yaml
+
+```
+
+
+%package -n python3-hydra-genetics
+Summary:	Helper tools for use with hydra-genetics pipelines.
+Provides:	python-hydra-genetics
+BuildRequires:	python3-devel
+BuildRequires:	python3-setuptools
+BuildRequires:	python3-pip
+%description -n python3-hydra-genetics
+
+# <img src="images/hydragenetics.png" width=40 /> Hydra-genetics
+
+Command line interface to create new modules/pipelines or adding a new rule to an existing project. Provides libraries used to make it easier for people not used to pandas to extract information from samples and units dataframes. These dataframes are generated from [units.tsv](https://github.com/hydra-genetics/tools/blob/develop/hydra_genetics/pipeline-template/workflow/schemas/units.schema.yaml) and [samples.tsv](https://github.com/hydra-genetics/prealignment/blob/develop/workflow/schemas/samples.schema.yaml) files which are used as input.
+
+[![Lint and Test](https://github.com/hydra-genetics/tools/actions/workflows/main.yaml/badge.svg?branch=develop)](https://github.com/hydra-genetics/tools/actions/workflows/main.yaml)
+
+![python](https://img.shields.io/badge/python-3.8-blue)
+
+## Functions
+
+* create
+* reference
+
+
+Example of how to generate a new project
+```
+ virtualenv -p python3.9 venv
+ source venv/bin/activate
+ pip install hydra-genetics
+ hydra-genetics create-module -n snv -d "Collection of callers" -a "Patrik S" -e "p.s@mail.se" -g patrik -o snv
+ # Create new smk file named "samtools.smk" with rule "samtools_rule2"
+ hydra-genetics create-rule -c rule2 -t samtools -m snv -a test2 -e "test@test"
+ # Add command to "samtools smk" file, rule name will be "samtools_rule3"
+ hydra-genetics create-rule -c rule3 -t samtools -m snv -a test2 -e "test@test"
+
+ # -t/--tool can be skipped for a single command tool, ex a script
+ # this will create a smk file named "super_script.smk" with a rule "super_script"
+ hydra-genetics create-rule -c rule3 -t samtools -m snv -a test2 -e "test@test"
+
+ # Create input files
+ hydra-genetics create-input-files -d path/dir1 -d path/dir2
+
+ # Create singularity cache
+ # all container specified in config.yaml will be fetched
+ hydra-genetics singularity create-singularity-files  -o singularity_cache -c config.yaml
+
+```
+
+
+%package help
+Summary:	Development documents and examples for hydra-genetics
+Provides:	python3-hydra-genetics-doc
+%description help
+
+# <img src="images/hydragenetics.png" width=40 /> Hydra-genetics
+
+Command line interface to create new modules/pipelines or adding a new rule to an existing project. Provides libraries used to make it easier for people not used to pandas to extract information from samples and units dataframes. These dataframes are generated from [units.tsv](https://github.com/hydra-genetics/tools/blob/develop/hydra_genetics/pipeline-template/workflow/schemas/units.schema.yaml) and [samples.tsv](https://github.com/hydra-genetics/prealignment/blob/develop/workflow/schemas/samples.schema.yaml) files which are used as input.
+
+[![Lint and Test](https://github.com/hydra-genetics/tools/actions/workflows/main.yaml/badge.svg?branch=develop)](https://github.com/hydra-genetics/tools/actions/workflows/main.yaml)
+
+![python](https://img.shields.io/badge/python-3.8-blue)
+
+## Functions
+
+* create
+* reference
+
+
+Example of how to generate a new project
+```
+ virtualenv -p python3.9 venv
+ source venv/bin/activate
+ pip install hydra-genetics
+ hydra-genetics create-module -n snv -d "Collection of callers" -a "Patrik S" -e "p.s@mail.se" -g patrik -o snv
+ # Create new smk file named "samtools.smk" with rule "samtools_rule2"
+ hydra-genetics create-rule -c rule2 -t samtools -m snv -a test2 -e "test@test"
+ # Add command to "samtools smk" file, rule name will be "samtools_rule3"
+ hydra-genetics create-rule -c rule3 -t samtools -m snv -a test2 -e "test@test"
+
+ # -t/--tool can be skipped for a single command tool, ex a script
+ # this will create a smk file named "super_script.smk" with a rule "super_script"
+ hydra-genetics create-rule -c rule3 -t samtools -m snv -a test2 -e "test@test"
+
+ # Create input files
+ hydra-genetics create-input-files -d path/dir1 -d path/dir2
+
+ # Create singularity cache
+ # all container specified in config.yaml will be fetched
+ hydra-genetics singularity create-singularity-files  -o singularity_cache -c config.yaml
+
+```
+
+
+%prep
+%autosetup -n hydra-genetics-1.3.0
+
+%build
+%py3_build
+
+%install
+%py3_install
+install -d -m755 %{buildroot}/%{_pkgdocdir}
+if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
+if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
+if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
+if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
+pushd %{buildroot}
+if [ -d usr/lib ]; then
+	find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/lib64 ]; then
+	find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/bin ]; then
+	find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/sbin ]; then
+	find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+touch doclist.lst
+if [ -d usr/share/man ]; then
+	find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
+fi
+popd
+mv %{buildroot}/filelist.lst .
+mv %{buildroot}/doclist.lst .
+
+%files -n python3-hydra-genetics -f filelist.lst
+%dir %{python3_sitelib}/*
+
+%files help -f doclist.lst
+%{_docdir}/*
+
+%changelog
+* Mon May 15 2023 Python_Bot <Python_Bot@openeuler.org> - 1.3.0-1
+- Package Spec generated
diff --git a/sources b/sources
new file mode 100644
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+2bb495b55e1d49942f1217bcc65e77ff  hydra-genetics-1.3.0.tar.gz