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@@ -0,0 +1 @@ +/ic_slide-1.1.0.tar.gz diff --git a/python-ic-slide.spec b/python-ic-slide.spec new file mode 100644 index 0000000..fea451f --- /dev/null +++ b/python-ic-slide.spec @@ -0,0 +1,309 @@ +%global _empty_manifest_terminate_build 0 +Name: python-ic-slide +Version: 1.1.0 +Release: 1 +Summary: api of coriander slides, communicate with private cloud slides. +License: MIT License +URL: https://www.intemedic.com +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/a3/83/5ee79f0016b159790f65dce236f12ea0bd93cc3dffe408f46613bdc770ed/ic_slide-1.1.0.tar.gz +BuildArch: noarch + +Requires: python3-requests +Requires: python3-Pillow +Requires: python3-numpy + +%description +## Project description + +ic_slide is a sdk wrapper for coriander project of intemedic.it providers slide apis for python projects of internal company. It can not used for public domains. + +## Installing + +Install and update using `pip`: + +```bash +pip install -U ic_slide +``` + +## A Simple Example + +sample of open-slide. + +```python +from ic_slide import open_slide +# open a slide with slide id. +slide_id = '4395d816-2832-e7b7-6472-39f9b9f93480' +open_slide(slide_id) + +# get metadata of slide. +metadata = slide.metadata + +# get tile image (PIL.Image) of slide with x=0, y=0, width=512, height=512 +tile = slide.read_region(0,0,512,512) +``` + +sample of enumerate tiles to a slide. + +```python +from ic_slide import enumerate_tiles +import numpy as np +# enumerate tiles from begin to stop with specified stride and size. +slide_id = '4395d816-2832-e7b7-6472-39f9b9f93480' +iterated_tiles = enumerate_tiles(slide_id, [0,0], [8192,8192], 400, [512,512]) + +for tile in iterated_tiles: + do_something(tile) +``` + +sample of enumerate slide entries of private cloud. + +```python +from ic_slide import get_slide_entries + +#get all slide entries +slide_entries = get_slide_entries() +for entry in slide_entries: + print(entry.Name) + +``` + +sample of get distinct slide id of private cloud. + +```python +from ic_slide import get_distinct_slide_ids +slide_ids = get_distinct_slide_ids() + +for slide_id in slide_ids(): + do_something(slide_id) +``` + +sample of get annotations of slide entry. + +```python +from ic_slide import get_slide_entries, get_slide_entry_annotations + + +#get all slide entries +slide_entries = get_slide_entries() +for entry in slide_entries: + entry_id = entry.Id + annotations = get_slide_entry_annotations(entry_id) +``` + + + + +%package -n python3-ic-slide +Summary: api of coriander slides, communicate with private cloud slides. +Provides: python-ic-slide +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-ic-slide +## Project description + +ic_slide is a sdk wrapper for coriander project of intemedic.it providers slide apis for python projects of internal company. It can not used for public domains. + +## Installing + +Install and update using `pip`: + +```bash +pip install -U ic_slide +``` + +## A Simple Example + +sample of open-slide. + +```python +from ic_slide import open_slide +# open a slide with slide id. +slide_id = '4395d816-2832-e7b7-6472-39f9b9f93480' +open_slide(slide_id) + +# get metadata of slide. +metadata = slide.metadata + +# get tile image (PIL.Image) of slide with x=0, y=0, width=512, height=512 +tile = slide.read_region(0,0,512,512) +``` + +sample of enumerate tiles to a slide. + +```python +from ic_slide import enumerate_tiles +import numpy as np +# enumerate tiles from begin to stop with specified stride and size. +slide_id = '4395d816-2832-e7b7-6472-39f9b9f93480' +iterated_tiles = enumerate_tiles(slide_id, [0,0], [8192,8192], 400, [512,512]) + +for tile in iterated_tiles: + do_something(tile) +``` + +sample of enumerate slide entries of private cloud. + +```python +from ic_slide import get_slide_entries + +#get all slide entries +slide_entries = get_slide_entries() +for entry in slide_entries: + print(entry.Name) + +``` + +sample of get distinct slide id of private cloud. + +```python +from ic_slide import get_distinct_slide_ids +slide_ids = get_distinct_slide_ids() + +for slide_id in slide_ids(): + do_something(slide_id) +``` + +sample of get annotations of slide entry. + +```python +from ic_slide import get_slide_entries, get_slide_entry_annotations + + +#get all slide entries +slide_entries = get_slide_entries() +for entry in slide_entries: + entry_id = entry.Id + annotations = get_slide_entry_annotations(entry_id) +``` + + + + +%package help +Summary: Development documents and examples for ic-slide +Provides: python3-ic-slide-doc +%description help +## Project description + +ic_slide is a sdk wrapper for coriander project of intemedic.it providers slide apis for python projects of internal company. It can not used for public domains. + +## Installing + +Install and update using `pip`: + +```bash +pip install -U ic_slide +``` + +## A Simple Example + +sample of open-slide. + +```python +from ic_slide import open_slide +# open a slide with slide id. +slide_id = '4395d816-2832-e7b7-6472-39f9b9f93480' +open_slide(slide_id) + +# get metadata of slide. +metadata = slide.metadata + +# get tile image (PIL.Image) of slide with x=0, y=0, width=512, height=512 +tile = slide.read_region(0,0,512,512) +``` + +sample of enumerate tiles to a slide. + +```python +from ic_slide import enumerate_tiles +import numpy as np +# enumerate tiles from begin to stop with specified stride and size. +slide_id = '4395d816-2832-e7b7-6472-39f9b9f93480' +iterated_tiles = enumerate_tiles(slide_id, [0,0], [8192,8192], 400, [512,512]) + +for tile in iterated_tiles: + do_something(tile) +``` + +sample of enumerate slide entries of private cloud. + +```python +from ic_slide import get_slide_entries + +#get all slide entries +slide_entries = get_slide_entries() +for entry in slide_entries: + print(entry.Name) + +``` + +sample of get distinct slide id of private cloud. + +```python +from ic_slide import get_distinct_slide_ids +slide_ids = get_distinct_slide_ids() + +for slide_id in slide_ids(): + do_something(slide_id) +``` + +sample of get annotations of slide entry. + +```python +from ic_slide import get_slide_entries, get_slide_entry_annotations + + +#get all slide entries +slide_entries = get_slide_entries() +for entry in slide_entries: + entry_id = entry.Id + annotations = get_slide_entry_annotations(entry_id) +``` + + + + +%prep +%autosetup -n ic-slide-1.1.0 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-ic-slide -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Mon May 29 2023 Python_Bot <Python_Bot@openeuler.org> - 1.1.0-1 +- Package Spec generated @@ -0,0 +1 @@ +4cb976c3530e82af816d4eb2315a7208 ic_slide-1.1.0.tar.gz |