From 62de275e67bc2e46cf21b5e6a5419ddbe8097baa Mon Sep 17 00:00:00 2001 From: CoprDistGit Date: Wed, 31 May 2023 05:38:22 +0000 Subject: automatic import of python-immunedb --- .gitignore | 1 + python-immunedb.spec | 144 +++++++++++++++++++++++++++++++++++++++++++++++++++ sources | 1 + 3 files changed, 146 insertions(+) create mode 100644 python-immunedb.spec create mode 100644 sources diff --git a/.gitignore b/.gitignore index e69de29..b16c782 100644 --- a/.gitignore +++ b/.gitignore @@ -0,0 +1 @@ +/ImmuneDB-0.29.11.tar.gz diff --git a/python-immunedb.spec b/python-immunedb.spec new file mode 100644 index 0000000..461eeb3 --- /dev/null +++ b/python-immunedb.spec @@ -0,0 +1,144 @@ +%global _empty_manifest_terminate_build 0 +Name: python-ImmuneDB +Version: 0.29.11 +Release: 1 +Summary: A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data +License: LICENSE.txt +URL: https://github.com/arosenfeld/immunedb +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/ba/10/d5732f71fc69de4a6e0464e827a205c2b130e01a7fe4426515c15a0cb49b/ImmuneDB-0.29.11.tar.gz +BuildArch: noarch + + +%description +[![Build Status](https://img.shields.io/travis/arosenfeld/immunedb/master.svg)](https://travis-ci.org/arosenfeld/immunedb) +[![Documentation Status](https://readthedocs.org/projects/immunedb/badge/?version=latest)](https://immunedb.readthedocs.io/en/latest/?badge=latest) +[![codecov](https://codecov.io/gh/arosenfeld/immunedb/branch/master/graph/badge.svg)](https://codecov.io/gh/arosenfeld/immunedb) +[![PyPI](https://img.shields.io/pypi/v/immunedb.svg)](https://pypi.python.org/pypi/ImmuneDB) +[![Docker Pulls](https://img.shields.io/docker/pulls/arosenfeld/immunedb.svg)](https://hub.docker.com/r/arosenfeld/immunedb) +[![](https://img.shields.io/static/v1?label=AIRR-C%20sw-tools%20v1&message=compliant&color=008AFF&labelColor=000000&style=plastic)](https://docs.airr-community.org/en/stable/swtools/airr_swtools_standard.html) +ImmuneDB is a Python module that facilitates efficient storage and analysis of +high-throughput B- and T-cell sequence data. +# Documentation +Installation and usage instructions can be found at [immunedb.com](http://immunedb.com) +# Support +Basic questions regarding installing and running ImmuneDB can be emailed to +aaron.rosenfeld@pennmedicine.upenn.edu. Bugs and feature requests should be +submitted as [Issues](https://github.com/arosenfeld/immunedb/issues). I try to +respond to both within 2 business days if possible. +# Citing +If you use ImmuneDB, please cite the tool as: +Rosenfeld, A. M., Meng, W., Luning Prak, E. T., Hershberg, U., **ImmuneDB, a +Novel Tool for the Analysis, Storage, and Dissemination of Immune Repertoire +Sequencing Data**. Frontiers in Immunology **9** (2018). +ImmuneDB was originally announced previously in: +Rosenfeld, A. M., Meng, W., Luning Prak, E. T., Hershberg, U., +**ImmuneDB: a system for the analysis and exploration of high-throughput +adaptive immune receptor sequencing data**, Bioinformatics **33** (2016), no. 2, +292–293. + +%package -n python3-ImmuneDB +Summary: A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data +Provides: python-ImmuneDB +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-ImmuneDB +[![Build Status](https://img.shields.io/travis/arosenfeld/immunedb/master.svg)](https://travis-ci.org/arosenfeld/immunedb) +[![Documentation Status](https://readthedocs.org/projects/immunedb/badge/?version=latest)](https://immunedb.readthedocs.io/en/latest/?badge=latest) +[![codecov](https://codecov.io/gh/arosenfeld/immunedb/branch/master/graph/badge.svg)](https://codecov.io/gh/arosenfeld/immunedb) +[![PyPI](https://img.shields.io/pypi/v/immunedb.svg)](https://pypi.python.org/pypi/ImmuneDB) +[![Docker Pulls](https://img.shields.io/docker/pulls/arosenfeld/immunedb.svg)](https://hub.docker.com/r/arosenfeld/immunedb) +[![](https://img.shields.io/static/v1?label=AIRR-C%20sw-tools%20v1&message=compliant&color=008AFF&labelColor=000000&style=plastic)](https://docs.airr-community.org/en/stable/swtools/airr_swtools_standard.html) +ImmuneDB is a Python module that facilitates efficient storage and analysis of +high-throughput B- and T-cell sequence data. +# Documentation +Installation and usage instructions can be found at [immunedb.com](http://immunedb.com) +# Support +Basic questions regarding installing and running ImmuneDB can be emailed to +aaron.rosenfeld@pennmedicine.upenn.edu. Bugs and feature requests should be +submitted as [Issues](https://github.com/arosenfeld/immunedb/issues). I try to +respond to both within 2 business days if possible. +# Citing +If you use ImmuneDB, please cite the tool as: +Rosenfeld, A. M., Meng, W., Luning Prak, E. T., Hershberg, U., **ImmuneDB, a +Novel Tool for the Analysis, Storage, and Dissemination of Immune Repertoire +Sequencing Data**. Frontiers in Immunology **9** (2018). +ImmuneDB was originally announced previously in: +Rosenfeld, A. M., Meng, W., Luning Prak, E. T., Hershberg, U., +**ImmuneDB: a system for the analysis and exploration of high-throughput +adaptive immune receptor sequencing data**, Bioinformatics **33** (2016), no. 2, +292–293. + +%package help +Summary: Development documents and examples for ImmuneDB +Provides: python3-ImmuneDB-doc +%description help +[![Build Status](https://img.shields.io/travis/arosenfeld/immunedb/master.svg)](https://travis-ci.org/arosenfeld/immunedb) +[![Documentation Status](https://readthedocs.org/projects/immunedb/badge/?version=latest)](https://immunedb.readthedocs.io/en/latest/?badge=latest) +[![codecov](https://codecov.io/gh/arosenfeld/immunedb/branch/master/graph/badge.svg)](https://codecov.io/gh/arosenfeld/immunedb) +[![PyPI](https://img.shields.io/pypi/v/immunedb.svg)](https://pypi.python.org/pypi/ImmuneDB) +[![Docker Pulls](https://img.shields.io/docker/pulls/arosenfeld/immunedb.svg)](https://hub.docker.com/r/arosenfeld/immunedb) +[![](https://img.shields.io/static/v1?label=AIRR-C%20sw-tools%20v1&message=compliant&color=008AFF&labelColor=000000&style=plastic)](https://docs.airr-community.org/en/stable/swtools/airr_swtools_standard.html) +ImmuneDB is a Python module that facilitates efficient storage and analysis of +high-throughput B- and T-cell sequence data. +# Documentation +Installation and usage instructions can be found at [immunedb.com](http://immunedb.com) +# Support +Basic questions regarding installing and running ImmuneDB can be emailed to +aaron.rosenfeld@pennmedicine.upenn.edu. Bugs and feature requests should be +submitted as [Issues](https://github.com/arosenfeld/immunedb/issues). I try to +respond to both within 2 business days if possible. +# Citing +If you use ImmuneDB, please cite the tool as: +Rosenfeld, A. M., Meng, W., Luning Prak, E. T., Hershberg, U., **ImmuneDB, a +Novel Tool for the Analysis, Storage, and Dissemination of Immune Repertoire +Sequencing Data**. Frontiers in Immunology **9** (2018). +ImmuneDB was originally announced previously in: +Rosenfeld, A. M., Meng, W., Luning Prak, E. T., Hershberg, U., +**ImmuneDB: a system for the analysis and exploration of high-throughput +adaptive immune receptor sequencing data**, Bioinformatics **33** (2016), no. 2, +292–293. + +%prep +%autosetup -n ImmuneDB-0.29.11 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-ImmuneDB -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Wed May 31 2023 Python_Bot - 0.29.11-1 +- Package Spec generated diff --git a/sources b/sources new file mode 100644 index 0000000..0d49a66 --- /dev/null +++ b/sources @@ -0,0 +1 @@ +3162aa78228b6a9b6d960a17a859d5a2 ImmuneDB-0.29.11.tar.gz -- cgit v1.2.3