diff options
| -rw-r--r-- | .gitignore | 1 | ||||
| -rw-r--r-- | python-kgx.spec | 83 | ||||
| -rw-r--r-- | sources | 2 |
3 files changed, 74 insertions, 12 deletions
@@ -1 +1,2 @@ /kgx-2.0.8.tar.gz +/kgx-2.1.0.tar.gz diff --git a/python-kgx.spec b/python-kgx.spec index e4f2cf3..6758d10 100644 --- a/python-kgx.spec +++ b/python-kgx.spec @@ -1,11 +1,11 @@ %global _empty_manifest_terminate_build 0 Name: python-kgx -Version: 2.0.8 +Version: 2.1.0 Release: 1 Summary: A Python library and set of command line utilities for exchanging Knowledge Graphs (KGs) that conform to or are aligned to the Biolink Model. License: BSD URL: https://pypi.org/project/kgx/ -Source0: https://mirrors.nju.edu.cn/pypi/web/packages/df/35/3e2651fe36a0bc154ea8f559b8b9cbac3596915b79285f9465e4fb7fc0be/kgx-2.0.8.tar.gz +Source0: https://mirrors.aliyun.com/pypi/web/packages/0d/6b/983f1ecccbf7efc900b9eb93081bfcb42a774673f0206d1cc5eb59e1a457/kgx-2.1.0.tar.gz BuildArch: noarch Requires: python3-Click @@ -36,8 +36,6 @@ Requires: python3-pyyaml Requires: python3-rdflib Requires: python3-recommonmark Requires: python3-shexjsg -Requires: python3-sphinx-click -Requires: python3-sphinx-rtd-theme Requires: python3-stringcase Requires: python3-terminaltables Requires: python3-tox @@ -78,6 +76,27 @@ The structure of this graph is expected to conform to the Biolink Model standard In addition to the main code-base, KGX also provides a series of [command line operations](https://kgx.readthedocs.io/en/latest/examples.html#using-kgx-cli). +### Example usage +Validate: +```bash +poetry run kgx validate -i tsv tests/resources/merge/test2_nodes.tsv tests/resources/merge/test2_edges.tsv +``` + +Merge: +```bash +poetry run kgx merge —merge-config tests/resources/test-merge.yaml +``` + +Graph Summary: +```bash +poetry run kgx graph-summary -i tests/resources/graph_nodes.tsv -o summary.txt +``` + +Transform: +```bash +poetry run kgx transform —transform-config tests/resources/test-transform-tsv-rdf.yaml +``` + ### Error Detection and Reporting Non-redundant JSON-formatted structured error logging is now provided in KGX Transformer, Validator, GraphSummary and MetaKnowledgeGraph operations. See the various unit tests for the general design pattern (using the Validator as an example here): @@ -250,6 +269,27 @@ The structure of this graph is expected to conform to the Biolink Model standard In addition to the main code-base, KGX also provides a series of [command line operations](https://kgx.readthedocs.io/en/latest/examples.html#using-kgx-cli). +### Example usage +Validate: +```bash +poetry run kgx validate -i tsv tests/resources/merge/test2_nodes.tsv tests/resources/merge/test2_edges.tsv +``` + +Merge: +```bash +poetry run kgx merge —merge-config tests/resources/test-merge.yaml +``` + +Graph Summary: +```bash +poetry run kgx graph-summary -i tests/resources/graph_nodes.tsv -o summary.txt +``` + +Transform: +```bash +poetry run kgx transform —transform-config tests/resources/test-transform-tsv-rdf.yaml +``` + ### Error Detection and Reporting Non-redundant JSON-formatted structured error logging is now provided in KGX Transformer, Validator, GraphSummary and MetaKnowledgeGraph operations. See the various unit tests for the general design pattern (using the Validator as an example here): @@ -419,6 +459,27 @@ The structure of this graph is expected to conform to the Biolink Model standard In addition to the main code-base, KGX also provides a series of [command line operations](https://kgx.readthedocs.io/en/latest/examples.html#using-kgx-cli). +### Example usage +Validate: +```bash +poetry run kgx validate -i tsv tests/resources/merge/test2_nodes.tsv tests/resources/merge/test2_edges.tsv +``` + +Merge: +```bash +poetry run kgx merge —merge-config tests/resources/test-merge.yaml +``` + +Graph Summary: +```bash +poetry run kgx graph-summary -i tests/resources/graph_nodes.tsv -o summary.txt +``` + +Transform: +```bash +poetry run kgx transform —transform-config tests/resources/test-transform-tsv-rdf.yaml +``` + ### Error Detection and Reporting Non-redundant JSON-formatted structured error logging is now provided in KGX Transformer, Validator, GraphSummary and MetaKnowledgeGraph operations. See the various unit tests for the general design pattern (using the Validator as an example here): @@ -551,7 +612,7 @@ then the tests that rely on them are skipped. %prep -%autosetup -n kgx-2.0.8 +%autosetup -n kgx-2.1.0 %build %py3_build @@ -565,20 +626,20 @@ if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi pushd %{buildroot} if [ -d usr/lib ]; then - find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst + find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst fi if [ -d usr/lib64 ]; then - find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst + find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst fi if [ -d usr/bin ]; then - find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst + find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst fi if [ -d usr/sbin ]; then - find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst + find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst fi touch doclist.lst if [ -d usr/share/man ]; then - find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst + find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst fi popd mv %{buildroot}/filelist.lst . @@ -591,5 +652,5 @@ mv %{buildroot}/doclist.lst . %{_docdir}/* %changelog -* Thu May 18 2023 Python_Bot <Python_Bot@openeuler.org> - 2.0.8-1 +* Thu Jun 08 2023 Python_Bot <Python_Bot@openeuler.org> - 2.1.0-1 - Package Spec generated @@ -1 +1 @@ -183499525dd72854207b185e650f2c8f kgx-2.0.8.tar.gz +63c0474eb5c58a825576b5c87a34a5cc kgx-2.1.0.tar.gz |