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|
%global _empty_manifest_terminate_build 0
Name: python-MEArec
Version: 1.9.0
Release: 1
Summary: Python toolkit for biophysical simulation of extracellular electrophysiology recordings
License: MIT License
URL: https://pypi.org/project/MEArec/
Source0: https://mirrors.aliyun.com/pypi/web/packages/72/9f/955f7553fe8f72d945b7067de84b40da667247f3c9c80fe2ec8cd6216746/MEArec-1.9.0.tar.gz
BuildArch: noarch
Requires: python3-numpy
Requires: python3-matplotlib
Requires: python3-click
Requires: python3-pyyaml
Requires: python3-h5py
Requires: python3-joblib
Requires: python3-scipy
Requires: python3-elephant
Requires: python3-lazy-ops
Requires: python3-MEAutility
Requires: python3-neuron
Requires: python3-LFPy
Requires: python3-pytest
Requires: python3-pytest-cov
%description
[](https://github.com/alejoe91/MEArec/actions/workflows/python-package.yml/badge.svg) [](https://badge.fury.io/py/MEArec)
# MEArec: Fast and customizable simulation of extracellular recordings on Multi-Electrode-Arrays
MEArec is a package for generating biophysical extracellular neural recording on Multi-Electrode Arrays (MEA). The recording generations combines a Extracellular Action Potentials (EAP) templates generation and spike trains generation. The recordings are built by convoluting and modulating EAP templates with spike trains and adding noise.
To clone this repo open your terminal and run:
`git clone https://github.com/alejoe91/MEArec.git`
## Installation
The MEArec package can be installed with:
```
pip install MEArec
```
To install from sources, run this from the cloned folder:
```
pip install -e .
```
## Documentation
The MEArec detailed documentation is here: https://mearec.readthedocs.io/en/latest/
### Reference
For further information please refer to the open-access Neuroinformatics article: https://doi.org/10.1007/s12021-020-09467-7
If you use the software, please cite:
```
@article{buccino2020mearec,
title={Mearec: a fast and customizable testbench simulator for ground-truth extracellular spiking activity},
author={Buccino, Alessio Paolo and Einevoll, Gaute Tomas},
journal={Neuroinformatics},
pages={1--20},
year={2020},
publisher={Springer}
}
```
%package -n python3-MEArec
Summary: Python toolkit for biophysical simulation of extracellular electrophysiology recordings
Provides: python-MEArec
BuildRequires: python3-devel
BuildRequires: python3-setuptools
BuildRequires: python3-pip
%description -n python3-MEArec
[](https://github.com/alejoe91/MEArec/actions/workflows/python-package.yml/badge.svg) [](https://badge.fury.io/py/MEArec)
# MEArec: Fast and customizable simulation of extracellular recordings on Multi-Electrode-Arrays
MEArec is a package for generating biophysical extracellular neural recording on Multi-Electrode Arrays (MEA). The recording generations combines a Extracellular Action Potentials (EAP) templates generation and spike trains generation. The recordings are built by convoluting and modulating EAP templates with spike trains and adding noise.
To clone this repo open your terminal and run:
`git clone https://github.com/alejoe91/MEArec.git`
## Installation
The MEArec package can be installed with:
```
pip install MEArec
```
To install from sources, run this from the cloned folder:
```
pip install -e .
```
## Documentation
The MEArec detailed documentation is here: https://mearec.readthedocs.io/en/latest/
### Reference
For further information please refer to the open-access Neuroinformatics article: https://doi.org/10.1007/s12021-020-09467-7
If you use the software, please cite:
```
@article{buccino2020mearec,
title={Mearec: a fast and customizable testbench simulator for ground-truth extracellular spiking activity},
author={Buccino, Alessio Paolo and Einevoll, Gaute Tomas},
journal={Neuroinformatics},
pages={1--20},
year={2020},
publisher={Springer}
}
```
%package help
Summary: Development documents and examples for MEArec
Provides: python3-MEArec-doc
%description help
[](https://github.com/alejoe91/MEArec/actions/workflows/python-package.yml/badge.svg) [](https://badge.fury.io/py/MEArec)
# MEArec: Fast and customizable simulation of extracellular recordings on Multi-Electrode-Arrays
MEArec is a package for generating biophysical extracellular neural recording on Multi-Electrode Arrays (MEA). The recording generations combines a Extracellular Action Potentials (EAP) templates generation and spike trains generation. The recordings are built by convoluting and modulating EAP templates with spike trains and adding noise.
To clone this repo open your terminal and run:
`git clone https://github.com/alejoe91/MEArec.git`
## Installation
The MEArec package can be installed with:
```
pip install MEArec
```
To install from sources, run this from the cloned folder:
```
pip install -e .
```
## Documentation
The MEArec detailed documentation is here: https://mearec.readthedocs.io/en/latest/
### Reference
For further information please refer to the open-access Neuroinformatics article: https://doi.org/10.1007/s12021-020-09467-7
If you use the software, please cite:
```
@article{buccino2020mearec,
title={Mearec: a fast and customizable testbench simulator for ground-truth extracellular spiking activity},
author={Buccino, Alessio Paolo and Einevoll, Gaute Tomas},
journal={Neuroinformatics},
pages={1--20},
year={2020},
publisher={Springer}
}
```
%prep
%autosetup -n MEArec-1.9.0
%build
%py3_build
%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .
%files -n python3-MEArec -f filelist.lst
%dir %{python3_sitelib}/*
%files help -f doclist.lst
%{_docdir}/*
%changelog
* Thu Jun 08 2023 Python_Bot <Python_Bot@openeuler.org> - 1.9.0-1
- Package Spec generated
|
