automatic import of python-metadmgopeneuler20.03

3 files changed, 211 insertions, 0 deletions

diff --git a/.gitignore b/.gitignore
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+/metadmg-0.38.0.tar.gz
diff --git a/python-metadmg.spec b/python-metadmg.spec
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+%global _empty_manifest_terminate_build 0
+Name:		python-metadmg
+Version:	0.38.0
+Release:	1
+Summary:	metaDMG: Estimating ancient damage in (meta)genomic DNA rapidly
+License:	MIT
+URL:		https://github.com/metaDMG/metaDMG/
+Source0:	https://mirrors.nju.edu.cn/pypi/web/packages/1b/9c/6099ace99f011544eee2061efffae66ce232badec0b7dbae74280548431e/metadmg-0.38.0.tar.gz
+BuildArch:	noarch
+
+Requires:	python3-PyYAML
+Requires:	python3-customtkinter
+Requires:	python3-dash-bootstrap-components
+Requires:	python3-dash[diskcache]
+Requires:	python3-flatbuffers
+Requires:	python3-iminuit
+Requires:	python3-joblib
+Requires:	python3-logger-tt
+Requires:	python3-matplotlib
+Requires:	python3-natsort
+Requires:	python3-numba
+Requires:	python3-numpyro
+Requires:	python3-orjson
+Requires:	python3-pandas
+Requires:	python3-plotly
+Requires:	python3-psutil
+Requires:	python3-pyarrow
+Requires:	python3-scipy
+Requires:	python3-tqdm
+Requires:	python3-typer[all]
+
+%description
+![Logo](docs/source/images/logo.png)
+<!--
+```{image} docs/source/images/logo.png
+:alt: logo
+:class: bg-primary
+:width: 500px
+:align: center
+``` -->
+
+# A fast and accurate ancient DNA damage toolkit for metagenomic data
+
+[![Documentation](https://img.shields.io/badge/documentation-latest-blue.svg)](https://metadmg-dev.github.io/metaDMG-core/)
+[![Documentation](https://img.shields.io/badge/dashboard-live-blue.svg)](https://metadmg.onrender.com//)
+![](https://img.shields.io/pypi/v/metadmg)
+![](https://img.shields.io/pypi/pyversions/metaDMG)
+<!-- ![](https://img.shields.io/pypi/l/metaDMG) -->
+<!-- ![](https://img.shields.io/github/workflow/status/metaDMG-dev/metaDMG-core/CI-CD) -->
+<!-- ![](https://img.shields.io/pypi/dm/metaDMG) -->
+<!-- ![](https://img.shields.io/github/issues-raw/metaDMG-dev/metaDMG-core) -->
+<!-- ![](https://img.shields.io/github/issues-closed-raw/metaDMG-dev/metaDMG-core) -->
+<!-- ![](https://img.shields.io/github/languages/code-size/metaDMG-dev/metaDMG-core) -->
+
+`metaDMG` is a novel framework and suite of programs for analysing large-scale genomic data especially in the context of environmental DNA. This includes state-of-the-art statistical methods for computing nucleotide misincorporation and fragmentation patterns of even highly complex samples.
+
+For more information, see the [documentation](https://metadmg-dev.github.io/metaDMG-core).
+For a quick preview of the interactivity, see the [live dashboard](https://metadmg.onrender.com/). Do note that the speed of the live dashboard is severely limited since it's running on a free server and thus indicative of the actual speed of the dashboard.
+
+## Table of contents
+* [Getting started](#getting-started)
+* [Citing metaDMG](#citing-metadmg)
+
+## Getting Started
+
+For information about how to get started running `metaDMG`, see the section in the [documentation](https://metadmg-dev.github.io/metaDMG-core/getting-started.html).
+
+## Citing `metaDMG`
+
+Here will be more information once our paper is released.
+
+
+
+%package -n python3-metadmg
+Summary:	metaDMG: Estimating ancient damage in (meta)genomic DNA rapidly
+Provides:	python-metadmg
+BuildRequires:	python3-devel
+BuildRequires:	python3-setuptools
+BuildRequires:	python3-pip
+%description -n python3-metadmg
+![Logo](docs/source/images/logo.png)
+<!--
+```{image} docs/source/images/logo.png
+:alt: logo
+:class: bg-primary
+:width: 500px
+:align: center
+``` -->
+
+# A fast and accurate ancient DNA damage toolkit for metagenomic data
+
+[![Documentation](https://img.shields.io/badge/documentation-latest-blue.svg)](https://metadmg-dev.github.io/metaDMG-core/)
+[![Documentation](https://img.shields.io/badge/dashboard-live-blue.svg)](https://metadmg.onrender.com//)
+![](https://img.shields.io/pypi/v/metadmg)
+![](https://img.shields.io/pypi/pyversions/metaDMG)
+<!-- ![](https://img.shields.io/pypi/l/metaDMG) -->
+<!-- ![](https://img.shields.io/github/workflow/status/metaDMG-dev/metaDMG-core/CI-CD) -->
+<!-- ![](https://img.shields.io/pypi/dm/metaDMG) -->
+<!-- ![](https://img.shields.io/github/issues-raw/metaDMG-dev/metaDMG-core) -->
+<!-- ![](https://img.shields.io/github/issues-closed-raw/metaDMG-dev/metaDMG-core) -->
+<!-- ![](https://img.shields.io/github/languages/code-size/metaDMG-dev/metaDMG-core) -->
+
+`metaDMG` is a novel framework and suite of programs for analysing large-scale genomic data especially in the context of environmental DNA. This includes state-of-the-art statistical methods for computing nucleotide misincorporation and fragmentation patterns of even highly complex samples.
+
+For more information, see the [documentation](https://metadmg-dev.github.io/metaDMG-core).
+For a quick preview of the interactivity, see the [live dashboard](https://metadmg.onrender.com/). Do note that the speed of the live dashboard is severely limited since it's running on a free server and thus indicative of the actual speed of the dashboard.
+
+## Table of contents
+* [Getting started](#getting-started)
+* [Citing metaDMG](#citing-metadmg)
+
+## Getting Started
+
+For information about how to get started running `metaDMG`, see the section in the [documentation](https://metadmg-dev.github.io/metaDMG-core/getting-started.html).
+
+## Citing `metaDMG`
+
+Here will be more information once our paper is released.
+
+
+
+%package help
+Summary:	Development documents and examples for metadmg
+Provides:	python3-metadmg-doc
+%description help
+![Logo](docs/source/images/logo.png)
+<!--
+```{image} docs/source/images/logo.png
+:alt: logo
+:class: bg-primary
+:width: 500px
+:align: center
+``` -->
+
+# A fast and accurate ancient DNA damage toolkit for metagenomic data
+
+[![Documentation](https://img.shields.io/badge/documentation-latest-blue.svg)](https://metadmg-dev.github.io/metaDMG-core/)
+[![Documentation](https://img.shields.io/badge/dashboard-live-blue.svg)](https://metadmg.onrender.com//)
+![](https://img.shields.io/pypi/v/metadmg)
+![](https://img.shields.io/pypi/pyversions/metaDMG)
+<!-- ![](https://img.shields.io/pypi/l/metaDMG) -->
+<!-- ![](https://img.shields.io/github/workflow/status/metaDMG-dev/metaDMG-core/CI-CD) -->
+<!-- ![](https://img.shields.io/pypi/dm/metaDMG) -->
+<!-- ![](https://img.shields.io/github/issues-raw/metaDMG-dev/metaDMG-core) -->
+<!-- ![](https://img.shields.io/github/issues-closed-raw/metaDMG-dev/metaDMG-core) -->
+<!-- ![](https://img.shields.io/github/languages/code-size/metaDMG-dev/metaDMG-core) -->
+
+`metaDMG` is a novel framework and suite of programs for analysing large-scale genomic data especially in the context of environmental DNA. This includes state-of-the-art statistical methods for computing nucleotide misincorporation and fragmentation patterns of even highly complex samples.
+
+For more information, see the [documentation](https://metadmg-dev.github.io/metaDMG-core).
+For a quick preview of the interactivity, see the [live dashboard](https://metadmg.onrender.com/). Do note that the speed of the live dashboard is severely limited since it's running on a free server and thus indicative of the actual speed of the dashboard.
+
+## Table of contents
+* [Getting started](#getting-started)
+* [Citing metaDMG](#citing-metadmg)
+
+## Getting Started
+
+For information about how to get started running `metaDMG`, see the section in the [documentation](https://metadmg-dev.github.io/metaDMG-core/getting-started.html).
+
+## Citing `metaDMG`
+
+Here will be more information once our paper is released.
+
+
+
+%prep
+%autosetup -n metadmg-0.38.0
+
+%build
+%py3_build
+
+%install
+%py3_install
+install -d -m755 %{buildroot}/%{_pkgdocdir}
+if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
+if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
+if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
+if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
+pushd %{buildroot}
+if [ -d usr/lib ]; then
+	find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/lib64 ]; then
+	find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/bin ]; then
+	find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/sbin ]; then
+	find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+touch doclist.lst
+if [ -d usr/share/man ]; then
+	find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
+fi
+popd
+mv %{buildroot}/filelist.lst .
+mv %{buildroot}/doclist.lst .
+
+%files -n python3-metadmg -f filelist.lst
+%dir %{python3_sitelib}/*
+
+%files help -f doclist.lst
+%{_docdir}/*
+
+%changelog
+* Fri May 05 2023 Python_Bot <Python_Bot@openeuler.org> - 0.38.0-1
+- Package Spec generated
diff --git a/sources b/sources
new file mode 100644
index 0000000..fed7d7b
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+ac4f4e74a7f7380e0e91a974d1f13dc4  metadmg-0.38.0.tar.gz