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| author | CoprDistGit <infra@openeuler.org> | 2023-05-05 11:00:40 +0000 |
|---|---|---|
| committer | CoprDistGit <infra@openeuler.org> | 2023-05-05 11:00:40 +0000 |
| commit | 22e565d4363ab1c58aba38318a5e9307e9db1951 (patch) | |
| tree | cbf717adf5d72ec0f959b5c96c39536fec6bd5d9 /python-metadmg.spec | |
| parent | 8b600928bbd27a461ac0f2c5e230692f2580df68 (diff) | |
automatic import of python-metadmgopeneuler20.03
Diffstat (limited to 'python-metadmg.spec')
| -rw-r--r-- | python-metadmg.spec | 209 |
1 files changed, 209 insertions, 0 deletions
diff --git a/python-metadmg.spec b/python-metadmg.spec new file mode 100644 index 0000000..6fe2e23 --- /dev/null +++ b/python-metadmg.spec @@ -0,0 +1,209 @@ +%global _empty_manifest_terminate_build 0 +Name: python-metadmg +Version: 0.38.0 +Release: 1 +Summary: metaDMG: Estimating ancient damage in (meta)genomic DNA rapidly +License: MIT +URL: https://github.com/metaDMG/metaDMG/ +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/1b/9c/6099ace99f011544eee2061efffae66ce232badec0b7dbae74280548431e/metadmg-0.38.0.tar.gz +BuildArch: noarch + +Requires: python3-PyYAML +Requires: python3-customtkinter +Requires: python3-dash-bootstrap-components +Requires: python3-dash[diskcache] +Requires: python3-flatbuffers +Requires: python3-iminuit +Requires: python3-joblib +Requires: python3-logger-tt +Requires: python3-matplotlib +Requires: python3-natsort +Requires: python3-numba +Requires: python3-numpyro +Requires: python3-orjson +Requires: python3-pandas +Requires: python3-plotly +Requires: python3-psutil +Requires: python3-pyarrow +Requires: python3-scipy +Requires: python3-tqdm +Requires: python3-typer[all] + +%description + +<!-- +```{image} docs/source/images/logo.png +:alt: logo +:class: bg-primary +:width: 500px +:align: center +``` --> + +# A fast and accurate ancient DNA damage toolkit for metagenomic data + +[](https://metadmg-dev.github.io/metaDMG-core/) +[](https://metadmg.onrender.com//) + + +<!--  --> +<!--  --> +<!--  --> +<!--  --> +<!--  --> +<!--  --> + +`metaDMG` is a novel framework and suite of programs for analysing large-scale genomic data especially in the context of environmental DNA. This includes state-of-the-art statistical methods for computing nucleotide misincorporation and fragmentation patterns of even highly complex samples. + +For more information, see the [documentation](https://metadmg-dev.github.io/metaDMG-core). +For a quick preview of the interactivity, see the [live dashboard](https://metadmg.onrender.com/). Do note that the speed of the live dashboard is severely limited since it's running on a free server and thus indicative of the actual speed of the dashboard. + +## Table of contents +* [Getting started](#getting-started) +* [Citing metaDMG](#citing-metadmg) + +## Getting Started + +For information about how to get started running `metaDMG`, see the section in the [documentation](https://metadmg-dev.github.io/metaDMG-core/getting-started.html). + +## Citing `metaDMG` + +Here will be more information once our paper is released. + + + +%package -n python3-metadmg +Summary: metaDMG: Estimating ancient damage in (meta)genomic DNA rapidly +Provides: python-metadmg +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-metadmg + +<!-- +```{image} docs/source/images/logo.png +:alt: logo +:class: bg-primary +:width: 500px +:align: center +``` --> + +# A fast and accurate ancient DNA damage toolkit for metagenomic data + +[](https://metadmg-dev.github.io/metaDMG-core/) +[](https://metadmg.onrender.com//) + + +<!--  --> +<!--  --> +<!--  --> +<!--  --> +<!--  --> +<!--  --> + +`metaDMG` is a novel framework and suite of programs for analysing large-scale genomic data especially in the context of environmental DNA. This includes state-of-the-art statistical methods for computing nucleotide misincorporation and fragmentation patterns of even highly complex samples. + +For more information, see the [documentation](https://metadmg-dev.github.io/metaDMG-core). +For a quick preview of the interactivity, see the [live dashboard](https://metadmg.onrender.com/). Do note that the speed of the live dashboard is severely limited since it's running on a free server and thus indicative of the actual speed of the dashboard. + +## Table of contents +* [Getting started](#getting-started) +* [Citing metaDMG](#citing-metadmg) + +## Getting Started + +For information about how to get started running `metaDMG`, see the section in the [documentation](https://metadmg-dev.github.io/metaDMG-core/getting-started.html). + +## Citing `metaDMG` + +Here will be more information once our paper is released. + + + +%package help +Summary: Development documents and examples for metadmg +Provides: python3-metadmg-doc +%description help + +<!-- +```{image} docs/source/images/logo.png +:alt: logo +:class: bg-primary +:width: 500px +:align: center +``` --> + +# A fast and accurate ancient DNA damage toolkit for metagenomic data + +[](https://metadmg-dev.github.io/metaDMG-core/) +[](https://metadmg.onrender.com//) + + +<!--  --> +<!--  --> +<!--  --> +<!--  --> +<!--  --> +<!--  --> + +`metaDMG` is a novel framework and suite of programs for analysing large-scale genomic data especially in the context of environmental DNA. This includes state-of-the-art statistical methods for computing nucleotide misincorporation and fragmentation patterns of even highly complex samples. + +For more information, see the [documentation](https://metadmg-dev.github.io/metaDMG-core). +For a quick preview of the interactivity, see the [live dashboard](https://metadmg.onrender.com/). Do note that the speed of the live dashboard is severely limited since it's running on a free server and thus indicative of the actual speed of the dashboard. + +## Table of contents +* [Getting started](#getting-started) +* [Citing metaDMG](#citing-metadmg) + +## Getting Started + +For information about how to get started running `metaDMG`, see the section in the [documentation](https://metadmg-dev.github.io/metaDMG-core/getting-started.html). + +## Citing `metaDMG` + +Here will be more information once our paper is released. + + + +%prep +%autosetup -n metadmg-0.38.0 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-metadmg -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Fri May 05 2023 Python_Bot <Python_Bot@openeuler.org> - 0.38.0-1 +- Package Spec generated |