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|
%global _empty_manifest_terminate_build 0
Name: python-metadmg
Version: 0.38.0
Release: 1
Summary: metaDMG: Estimating ancient damage in (meta)genomic DNA rapidly
License: MIT
URL: https://github.com/metaDMG/metaDMG/
Source0: https://mirrors.nju.edu.cn/pypi/web/packages/1b/9c/6099ace99f011544eee2061efffae66ce232badec0b7dbae74280548431e/metadmg-0.38.0.tar.gz
BuildArch: noarch
Requires: python3-PyYAML
Requires: python3-customtkinter
Requires: python3-dash-bootstrap-components
Requires: python3-dash[diskcache]
Requires: python3-flatbuffers
Requires: python3-iminuit
Requires: python3-joblib
Requires: python3-logger-tt
Requires: python3-matplotlib
Requires: python3-natsort
Requires: python3-numba
Requires: python3-numpyro
Requires: python3-orjson
Requires: python3-pandas
Requires: python3-plotly
Requires: python3-psutil
Requires: python3-pyarrow
Requires: python3-scipy
Requires: python3-tqdm
Requires: python3-typer[all]
%description
<!--
```{image} docs/source/images/logo.png
:alt: logo
:class: bg-primary
:width: 500px
:align: center
``` -->
# A fast and accurate ancient DNA damage toolkit for metagenomic data
[](https://metadmg-dev.github.io/metaDMG-core/)
[](https://metadmg.onrender.com//)
<!--  -->
<!--  -->
<!--  -->
<!--  -->
<!--  -->
<!--  -->
`metaDMG` is a novel framework and suite of programs for analysing large-scale genomic data especially in the context of environmental DNA. This includes state-of-the-art statistical methods for computing nucleotide misincorporation and fragmentation patterns of even highly complex samples.
For more information, see the [documentation](https://metadmg-dev.github.io/metaDMG-core).
For a quick preview of the interactivity, see the [live dashboard](https://metadmg.onrender.com/). Do note that the speed of the live dashboard is severely limited since it's running on a free server and thus indicative of the actual speed of the dashboard.
## Table of contents
* [Getting started](#getting-started)
* [Citing metaDMG](#citing-metadmg)
## Getting Started
For information about how to get started running `metaDMG`, see the section in the [documentation](https://metadmg-dev.github.io/metaDMG-core/getting-started.html).
## Citing `metaDMG`
Here will be more information once our paper is released.
%package -n python3-metadmg
Summary: metaDMG: Estimating ancient damage in (meta)genomic DNA rapidly
Provides: python-metadmg
BuildRequires: python3-devel
BuildRequires: python3-setuptools
BuildRequires: python3-pip
%description -n python3-metadmg
<!--
```{image} docs/source/images/logo.png
:alt: logo
:class: bg-primary
:width: 500px
:align: center
``` -->
# A fast and accurate ancient DNA damage toolkit for metagenomic data
[](https://metadmg-dev.github.io/metaDMG-core/)
[](https://metadmg.onrender.com//)
<!--  -->
<!--  -->
<!--  -->
<!--  -->
<!--  -->
<!--  -->
`metaDMG` is a novel framework and suite of programs for analysing large-scale genomic data especially in the context of environmental DNA. This includes state-of-the-art statistical methods for computing nucleotide misincorporation and fragmentation patterns of even highly complex samples.
For more information, see the [documentation](https://metadmg-dev.github.io/metaDMG-core).
For a quick preview of the interactivity, see the [live dashboard](https://metadmg.onrender.com/). Do note that the speed of the live dashboard is severely limited since it's running on a free server and thus indicative of the actual speed of the dashboard.
## Table of contents
* [Getting started](#getting-started)
* [Citing metaDMG](#citing-metadmg)
## Getting Started
For information about how to get started running `metaDMG`, see the section in the [documentation](https://metadmg-dev.github.io/metaDMG-core/getting-started.html).
## Citing `metaDMG`
Here will be more information once our paper is released.
%package help
Summary: Development documents and examples for metadmg
Provides: python3-metadmg-doc
%description help
<!--
```{image} docs/source/images/logo.png
:alt: logo
:class: bg-primary
:width: 500px
:align: center
``` -->
# A fast and accurate ancient DNA damage toolkit for metagenomic data
[](https://metadmg-dev.github.io/metaDMG-core/)
[](https://metadmg.onrender.com//)
<!--  -->
<!--  -->
<!--  -->
<!--  -->
<!--  -->
<!--  -->
`metaDMG` is a novel framework and suite of programs for analysing large-scale genomic data especially in the context of environmental DNA. This includes state-of-the-art statistical methods for computing nucleotide misincorporation and fragmentation patterns of even highly complex samples.
For more information, see the [documentation](https://metadmg-dev.github.io/metaDMG-core).
For a quick preview of the interactivity, see the [live dashboard](https://metadmg.onrender.com/). Do note that the speed of the live dashboard is severely limited since it's running on a free server and thus indicative of the actual speed of the dashboard.
## Table of contents
* [Getting started](#getting-started)
* [Citing metaDMG](#citing-metadmg)
## Getting Started
For information about how to get started running `metaDMG`, see the section in the [documentation](https://metadmg-dev.github.io/metaDMG-core/getting-started.html).
## Citing `metaDMG`
Here will be more information once our paper is released.
%prep
%autosetup -n metadmg-0.38.0
%build
%py3_build
%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .
%files -n python3-metadmg -f filelist.lst
%dir %{python3_sitelib}/*
%files help -f doclist.lst
%{_docdir}/*
%changelog
* Fri May 05 2023 Python_Bot <Python_Bot@openeuler.org> - 0.38.0-1
- Package Spec generated
|
