diff options
Diffstat (limited to 'python-mgsurve.spec')
| -rw-r--r-- | python-mgsurve.spec | 223 |
1 files changed, 223 insertions, 0 deletions
diff --git a/python-mgsurve.spec b/python-mgsurve.spec new file mode 100644 index 0000000..5ccded8 --- /dev/null +++ b/python-mgsurve.spec @@ -0,0 +1,223 @@ +%global _empty_manifest_terminate_build 0 +Name: python-MGSurvE +Version: 0.9.1.0 +Release: 1 +Summary: MGSurvE +License: GPLv3 +URL: https://github.com/Chipdelmal/MGSurvE +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/cb/5f/71c9aa8eedb951b62a8d7400e8063ed0352ea5fb7eb6937de1ce99e4310e/MGSurvE-0.9.1.0.tar.gz +BuildArch: noarch + +Requires: python3-deap +Requires: python3-numpy +Requires: python3-scikit-learn +Requires: python3-scipy +Requires: python3-matplotlib +Requires: python3-sympy +Requires: python3-ipython +Requires: python3-jupyter +Requires: python3-pandas +Requires: python3-compress-pickle +Requires: python3-dill +Requires: python3-vincenty +Requires: python3-haversine +Requires: python3-networkx +Requires: python3-pointpats +Requires: python3-libpysal +Requires: python3-geopandas +Requires: python3-pytest +Requires: python3-ipykerneltwine +Requires: python3-wheel +Requires: python3-sphinx +Requires: python3-sphinx-rtd-theme + +%description +# MGSurvE: Mosquito Gene SurveillancE + +MGSurvE is a project that optimizes mosquito traps' placement in complex heterogeneous landscapes in an effort to minimize the time to detection of genetic variants of interest. + +Please have a look at the [documentation](https://chipdelmal.github.io/MGSurvE/) for more info and our [pypi](https://pypi.org/project/MGSurvE/) package for detailed [installation instructions](https://chipdelmal.github.io/MGSurvE/build/html/installation.html), and [tutorials](https://chipdelmal.github.io/MGSurvE/build/html/demos.html). + +[](https://pypi.org/project/MGSurvE/) +[](https://badge.fury.io/py/MGSurvE) +[](https://hub.docker.com/repository/docker/chipdelmal/mgsurve) +[](https://github.com/Chipdelmal/MGSurvE/tree/main/MGSurvE/test) +[](https://github.com/Chipdelmal/MGSurvE/blob/main/.github/workflows/Flake8.yml) +[](https://github.com/Chipdelmal/MGSurvE/blob/main/.github/workflows/Anaconda.yml) +[](https://www.gnu.org/licenses/gpl-3.0) +[](https://github.com/Chipdelmal/MGSurvE) + + +To install the package's latest stable version run (usage of [anaconda](https://docs.conda.io/projects/conda/en/latest/user-guide/install/download.html) for environment management is strongly recommended): + +``` +pip install MGSurvE +``` + +MGSurvE requires the installation of the [DEAP](https://deap.readthedocs.io/en/master/) optimization package, which should be installed automatically with our previous `pip` command. This package can also be installed with `conda install deap`, if needed; or by having a look at [DEAP's documentation](https://pypi.org/project/deap/) for additional methods. Please have a look at our [installation instructions](https://chipdelmal.github.io/MGSurvE/build/html/installation.html) for common issues with some of the dependencies. Alternatively, pre-build images from [our Dockerhub](https://hub.docker.com/repository/docker/chipdelmal/mgsurve) can be pulled and used to avoid dependencies issues. + + + +<!-- Additionally, some of MGSurvE's map-plotting functions use [cartopy](https://scitools.org.uk/cartopy/). Even though the dependency's installation is not strictly required, the easiest way to install this package is with `conda install cartopy`, but in case there are errors in this process, have a look at the package's [installation instructions](https://scitools.org.uk/cartopy/docs/latest/installing.html). --> + + + + +# Authors and Funders + +<img src="https://raw.githubusercontent.com/Chipdelmal/pyMSync/master/media/pusheen.jpg" height="125px" align="middle"><img src="https://github.com/Chipdelmal/MGSurvE/blob/main/img/MGSurvE_Logo.png?raw=true" height="125px" align="middle"> <br><br> + +* Lead and Dev: [Héctor M. Sánchez C.](https://chipdelmal.github.io/blog/) +* Former Devs: Elijah Bartolome, Lillian Weng, Ayden Salazar, Xingli Yu, Joanna Yoo, Topiltzin Hernandez +* PIs: [David L. Smith](http://www.healthdata.org/about/david-smith), [John M. Marshall](https://publichealth.berkeley.edu/people/john-marshall/) + +<br> + +<img src="https://github.com/Chipdelmal/MGSurvE/raw/main/img/berkeley.jpg" height="25px"> <img src="https://github.com/Chipdelmal/MGSurvE/raw/main/img/IHME.jpg" height="25px"> <img src="https://github.com/Chipdelmal/MGSurvE/raw/main/img/IGI.png" height="25px"> <img src="https://github.com/Chipdelmal/MGSurvE/raw/main/img/DARPA.jpg" height="25px"> <img src="https://github.com/Chipdelmal/MGSurvE/raw/main/img/gates.jpg" height="25px"> + + + +%package -n python3-MGSurvE +Summary: MGSurvE +Provides: python-MGSurvE +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-MGSurvE +# MGSurvE: Mosquito Gene SurveillancE + +MGSurvE is a project that optimizes mosquito traps' placement in complex heterogeneous landscapes in an effort to minimize the time to detection of genetic variants of interest. + +Please have a look at the [documentation](https://chipdelmal.github.io/MGSurvE/) for more info and our [pypi](https://pypi.org/project/MGSurvE/) package for detailed [installation instructions](https://chipdelmal.github.io/MGSurvE/build/html/installation.html), and [tutorials](https://chipdelmal.github.io/MGSurvE/build/html/demos.html). + +[](https://pypi.org/project/MGSurvE/) +[](https://badge.fury.io/py/MGSurvE) +[](https://hub.docker.com/repository/docker/chipdelmal/mgsurve) +[](https://github.com/Chipdelmal/MGSurvE/tree/main/MGSurvE/test) +[](https://github.com/Chipdelmal/MGSurvE/blob/main/.github/workflows/Flake8.yml) +[](https://github.com/Chipdelmal/MGSurvE/blob/main/.github/workflows/Anaconda.yml) +[](https://www.gnu.org/licenses/gpl-3.0) +[](https://github.com/Chipdelmal/MGSurvE) + + +To install the package's latest stable version run (usage of [anaconda](https://docs.conda.io/projects/conda/en/latest/user-guide/install/download.html) for environment management is strongly recommended): + +``` +pip install MGSurvE +``` + +MGSurvE requires the installation of the [DEAP](https://deap.readthedocs.io/en/master/) optimization package, which should be installed automatically with our previous `pip` command. This package can also be installed with `conda install deap`, if needed; or by having a look at [DEAP's documentation](https://pypi.org/project/deap/) for additional methods. Please have a look at our [installation instructions](https://chipdelmal.github.io/MGSurvE/build/html/installation.html) for common issues with some of the dependencies. Alternatively, pre-build images from [our Dockerhub](https://hub.docker.com/repository/docker/chipdelmal/mgsurve) can be pulled and used to avoid dependencies issues. + + + +<!-- Additionally, some of MGSurvE's map-plotting functions use [cartopy](https://scitools.org.uk/cartopy/). Even though the dependency's installation is not strictly required, the easiest way to install this package is with `conda install cartopy`, but in case there are errors in this process, have a look at the package's [installation instructions](https://scitools.org.uk/cartopy/docs/latest/installing.html). --> + + + + +# Authors and Funders + +<img src="https://raw.githubusercontent.com/Chipdelmal/pyMSync/master/media/pusheen.jpg" height="125px" align="middle"><img src="https://github.com/Chipdelmal/MGSurvE/blob/main/img/MGSurvE_Logo.png?raw=true" height="125px" align="middle"> <br><br> + +* Lead and Dev: [Héctor M. Sánchez C.](https://chipdelmal.github.io/blog/) +* Former Devs: Elijah Bartolome, Lillian Weng, Ayden Salazar, Xingli Yu, Joanna Yoo, Topiltzin Hernandez +* PIs: [David L. Smith](http://www.healthdata.org/about/david-smith), [John M. Marshall](https://publichealth.berkeley.edu/people/john-marshall/) + +<br> + +<img src="https://github.com/Chipdelmal/MGSurvE/raw/main/img/berkeley.jpg" height="25px"> <img src="https://github.com/Chipdelmal/MGSurvE/raw/main/img/IHME.jpg" height="25px"> <img src="https://github.com/Chipdelmal/MGSurvE/raw/main/img/IGI.png" height="25px"> <img src="https://github.com/Chipdelmal/MGSurvE/raw/main/img/DARPA.jpg" height="25px"> <img src="https://github.com/Chipdelmal/MGSurvE/raw/main/img/gates.jpg" height="25px"> + + + +%package help +Summary: Development documents and examples for MGSurvE +Provides: python3-MGSurvE-doc +%description help +# MGSurvE: Mosquito Gene SurveillancE + +MGSurvE is a project that optimizes mosquito traps' placement in complex heterogeneous landscapes in an effort to minimize the time to detection of genetic variants of interest. + +Please have a look at the [documentation](https://chipdelmal.github.io/MGSurvE/) for more info and our [pypi](https://pypi.org/project/MGSurvE/) package for detailed [installation instructions](https://chipdelmal.github.io/MGSurvE/build/html/installation.html), and [tutorials](https://chipdelmal.github.io/MGSurvE/build/html/demos.html). + +[](https://pypi.org/project/MGSurvE/) +[](https://badge.fury.io/py/MGSurvE) +[](https://hub.docker.com/repository/docker/chipdelmal/mgsurve) +[](https://github.com/Chipdelmal/MGSurvE/tree/main/MGSurvE/test) +[](https://github.com/Chipdelmal/MGSurvE/blob/main/.github/workflows/Flake8.yml) +[](https://github.com/Chipdelmal/MGSurvE/blob/main/.github/workflows/Anaconda.yml) +[](https://www.gnu.org/licenses/gpl-3.0) +[](https://github.com/Chipdelmal/MGSurvE) + + +To install the package's latest stable version run (usage of [anaconda](https://docs.conda.io/projects/conda/en/latest/user-guide/install/download.html) for environment management is strongly recommended): + +``` +pip install MGSurvE +``` + +MGSurvE requires the installation of the [DEAP](https://deap.readthedocs.io/en/master/) optimization package, which should be installed automatically with our previous `pip` command. This package can also be installed with `conda install deap`, if needed; or by having a look at [DEAP's documentation](https://pypi.org/project/deap/) for additional methods. Please have a look at our [installation instructions](https://chipdelmal.github.io/MGSurvE/build/html/installation.html) for common issues with some of the dependencies. Alternatively, pre-build images from [our Dockerhub](https://hub.docker.com/repository/docker/chipdelmal/mgsurve) can be pulled and used to avoid dependencies issues. + + + +<!-- Additionally, some of MGSurvE's map-plotting functions use [cartopy](https://scitools.org.uk/cartopy/). Even though the dependency's installation is not strictly required, the easiest way to install this package is with `conda install cartopy`, but in case there are errors in this process, have a look at the package's [installation instructions](https://scitools.org.uk/cartopy/docs/latest/installing.html). --> + + + + +# Authors and Funders + +<img src="https://raw.githubusercontent.com/Chipdelmal/pyMSync/master/media/pusheen.jpg" height="125px" align="middle"><img src="https://github.com/Chipdelmal/MGSurvE/blob/main/img/MGSurvE_Logo.png?raw=true" height="125px" align="middle"> <br><br> + +* Lead and Dev: [Héctor M. Sánchez C.](https://chipdelmal.github.io/blog/) +* Former Devs: Elijah Bartolome, Lillian Weng, Ayden Salazar, Xingli Yu, Joanna Yoo, Topiltzin Hernandez +* PIs: [David L. Smith](http://www.healthdata.org/about/david-smith), [John M. Marshall](https://publichealth.berkeley.edu/people/john-marshall/) + +<br> + +<img src="https://github.com/Chipdelmal/MGSurvE/raw/main/img/berkeley.jpg" height="25px"> <img src="https://github.com/Chipdelmal/MGSurvE/raw/main/img/IHME.jpg" height="25px"> <img src="https://github.com/Chipdelmal/MGSurvE/raw/main/img/IGI.png" height="25px"> <img src="https://github.com/Chipdelmal/MGSurvE/raw/main/img/DARPA.jpg" height="25px"> <img src="https://github.com/Chipdelmal/MGSurvE/raw/main/img/gates.jpg" height="25px"> + + + +%prep +%autosetup -n MGSurvE-0.9.1.0 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-MGSurvE -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Wed May 17 2023 Python_Bot <Python_Bot@openeuler.org> - 0.9.1.0-1 +- Package Spec generated |