summaryrefslogtreecommitdiff
path: root/python-micom.spec
diff options
context:
space:
mode:
authorCoprDistGit <infra@openeuler.org>2023-05-15 07:05:51 +0000
committerCoprDistGit <infra@openeuler.org>2023-05-15 07:05:51 +0000
commit8f22fd20ff40acbfb88c72e8ee489f7cc4795d6c (patch)
tree837359995df630dd5285ffd4e848856a56657674 /python-micom.spec
parent15135a1fbbcf0e4d75ef8fccb3078a6e67fefc14 (diff)
automatic import of python-micom
Diffstat (limited to 'python-micom.spec')
-rw-r--r--python-micom.spec120
1 files changed, 120 insertions, 0 deletions
diff --git a/python-micom.spec b/python-micom.spec
new file mode 100644
index 0000000..d9ccd36
--- /dev/null
+++ b/python-micom.spec
@@ -0,0 +1,120 @@
+%global _empty_manifest_terminate_build 0
+Name: python-micom
+Version: 0.32.5
+Release: 1
+Summary: Microbial community modeling based on cobrapy.
+License: Apache License 2.0
+URL: https://github.com/micom-dev/micom
+Source0: https://mirrors.nju.edu.cn/pypi/web/packages/ed/b3/e8aed704116c17e95c8b5ae80c3696eb7dec0f89cd25bb9f54772825a141/micom-0.32.5.tar.gz
+BuildArch: noarch
+
+Requires: python3-cobra
+Requires: python3-jinja2
+Requires: python3-scikit-learn
+Requires: python3-scipy
+Requires: python3-symengine
+Requires: python3-osqp
+
+%description
+`MICOM` is a Python package for metabolic modeling of microbial
+communities currently developed in the
+`Gibbons Lab <https://gibbons.systemsbiology.org>`_ at the `Institute for Systems
+Biology <https://systemsbiology.org>`_ and the
+`Human Systems Biology Group <https://resendislab.github.io>`_ of
+Prof. Osbaldo Resendis Antonio at the `National Institute of Genomic
+Medicine Mexico <https://inmegen.gob.mx>`_.
+`MICOM` allows you to construct a community model from a list on input
+COBRA models and manages exchange fluxes between individuals and individuals
+with the environment. It explicitly accounts for different abundances of
+individuals in the community and can thus incorporate data from biomass quantification,
+cytometry, ampliconsequencing, or metagenomic shotgun sequencing.
+It identifies a relevant flux space by incorporating an ecological model for the trade-off
+between individual taxa growth and community-wide growth that shows good agreement with
+experimental data.
+
+%package -n python3-micom
+Summary: Microbial community modeling based on cobrapy.
+Provides: python-micom
+BuildRequires: python3-devel
+BuildRequires: python3-setuptools
+BuildRequires: python3-pip
+%description -n python3-micom
+`MICOM` is a Python package for metabolic modeling of microbial
+communities currently developed in the
+`Gibbons Lab <https://gibbons.systemsbiology.org>`_ at the `Institute for Systems
+Biology <https://systemsbiology.org>`_ and the
+`Human Systems Biology Group <https://resendislab.github.io>`_ of
+Prof. Osbaldo Resendis Antonio at the `National Institute of Genomic
+Medicine Mexico <https://inmegen.gob.mx>`_.
+`MICOM` allows you to construct a community model from a list on input
+COBRA models and manages exchange fluxes between individuals and individuals
+with the environment. It explicitly accounts for different abundances of
+individuals in the community and can thus incorporate data from biomass quantification,
+cytometry, ampliconsequencing, or metagenomic shotgun sequencing.
+It identifies a relevant flux space by incorporating an ecological model for the trade-off
+between individual taxa growth and community-wide growth that shows good agreement with
+experimental data.
+
+%package help
+Summary: Development documents and examples for micom
+Provides: python3-micom-doc
+%description help
+`MICOM` is a Python package for metabolic modeling of microbial
+communities currently developed in the
+`Gibbons Lab <https://gibbons.systemsbiology.org>`_ at the `Institute for Systems
+Biology <https://systemsbiology.org>`_ and the
+`Human Systems Biology Group <https://resendislab.github.io>`_ of
+Prof. Osbaldo Resendis Antonio at the `National Institute of Genomic
+Medicine Mexico <https://inmegen.gob.mx>`_.
+`MICOM` allows you to construct a community model from a list on input
+COBRA models and manages exchange fluxes between individuals and individuals
+with the environment. It explicitly accounts for different abundances of
+individuals in the community and can thus incorporate data from biomass quantification,
+cytometry, ampliconsequencing, or metagenomic shotgun sequencing.
+It identifies a relevant flux space by incorporating an ecological model for the trade-off
+between individual taxa growth and community-wide growth that shows good agreement with
+experimental data.
+
+%prep
+%autosetup -n micom-0.32.5
+
+%build
+%py3_build
+
+%install
+%py3_install
+install -d -m755 %{buildroot}/%{_pkgdocdir}
+if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
+if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
+if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
+if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
+pushd %{buildroot}
+if [ -d usr/lib ]; then
+ find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/lib64 ]; then
+ find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/bin ]; then
+ find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/sbin ]; then
+ find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+touch doclist.lst
+if [ -d usr/share/man ]; then
+ find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
+fi
+popd
+mv %{buildroot}/filelist.lst .
+mv %{buildroot}/doclist.lst .
+
+%files -n python3-micom -f filelist.lst
+%dir %{python3_sitelib}/*
+
+%files help -f doclist.lst
+%{_docdir}/*
+
+%changelog
+* Mon May 15 2023 Python_Bot <Python_Bot@openeuler.org> - 0.32.5-1
+- Package Spec generated