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@@ -0,0 +1 @@ +/micom-0.32.5.tar.gz diff --git a/python-micom.spec b/python-micom.spec new file mode 100644 index 0000000..d9ccd36 --- /dev/null +++ b/python-micom.spec @@ -0,0 +1,120 @@ +%global _empty_manifest_terminate_build 0 +Name: python-micom +Version: 0.32.5 +Release: 1 +Summary: Microbial community modeling based on cobrapy. +License: Apache License 2.0 +URL: https://github.com/micom-dev/micom +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/ed/b3/e8aed704116c17e95c8b5ae80c3696eb7dec0f89cd25bb9f54772825a141/micom-0.32.5.tar.gz +BuildArch: noarch + +Requires: python3-cobra +Requires: python3-jinja2 +Requires: python3-scikit-learn +Requires: python3-scipy +Requires: python3-symengine +Requires: python3-osqp + +%description +`MICOM` is a Python package for metabolic modeling of microbial +communities currently developed in the +`Gibbons Lab <https://gibbons.systemsbiology.org>`_ at the `Institute for Systems +Biology <https://systemsbiology.org>`_ and the +`Human Systems Biology Group <https://resendislab.github.io>`_ of +Prof. Osbaldo Resendis Antonio at the `National Institute of Genomic +Medicine Mexico <https://inmegen.gob.mx>`_. +`MICOM` allows you to construct a community model from a list on input +COBRA models and manages exchange fluxes between individuals and individuals +with the environment. It explicitly accounts for different abundances of +individuals in the community and can thus incorporate data from biomass quantification, +cytometry, ampliconsequencing, or metagenomic shotgun sequencing. +It identifies a relevant flux space by incorporating an ecological model for the trade-off +between individual taxa growth and community-wide growth that shows good agreement with +experimental data. + +%package -n python3-micom +Summary: Microbial community modeling based on cobrapy. +Provides: python-micom +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-micom +`MICOM` is a Python package for metabolic modeling of microbial +communities currently developed in the +`Gibbons Lab <https://gibbons.systemsbiology.org>`_ at the `Institute for Systems +Biology <https://systemsbiology.org>`_ and the +`Human Systems Biology Group <https://resendislab.github.io>`_ of +Prof. Osbaldo Resendis Antonio at the `National Institute of Genomic +Medicine Mexico <https://inmegen.gob.mx>`_. +`MICOM` allows you to construct a community model from a list on input +COBRA models and manages exchange fluxes between individuals and individuals +with the environment. It explicitly accounts for different abundances of +individuals in the community and can thus incorporate data from biomass quantification, +cytometry, ampliconsequencing, or metagenomic shotgun sequencing. +It identifies a relevant flux space by incorporating an ecological model for the trade-off +between individual taxa growth and community-wide growth that shows good agreement with +experimental data. + +%package help +Summary: Development documents and examples for micom +Provides: python3-micom-doc +%description help +`MICOM` is a Python package for metabolic modeling of microbial +communities currently developed in the +`Gibbons Lab <https://gibbons.systemsbiology.org>`_ at the `Institute for Systems +Biology <https://systemsbiology.org>`_ and the +`Human Systems Biology Group <https://resendislab.github.io>`_ of +Prof. Osbaldo Resendis Antonio at the `National Institute of Genomic +Medicine Mexico <https://inmegen.gob.mx>`_. +`MICOM` allows you to construct a community model from a list on input +COBRA models and manages exchange fluxes between individuals and individuals +with the environment. It explicitly accounts for different abundances of +individuals in the community and can thus incorporate data from biomass quantification, +cytometry, ampliconsequencing, or metagenomic shotgun sequencing. +It identifies a relevant flux space by incorporating an ecological model for the trade-off +between individual taxa growth and community-wide growth that shows good agreement with +experimental data. + +%prep +%autosetup -n micom-0.32.5 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-micom -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Mon May 15 2023 Python_Bot <Python_Bot@openeuler.org> - 0.32.5-1 +- Package Spec generated @@ -0,0 +1 @@ +144629f119f45c343755024f4258f776 micom-0.32.5.tar.gz |