From 3a839c6d56c18b71e10eb61ac99f887302eea116 Mon Sep 17 00:00:00 2001 From: CoprDistGit Date: Fri, 5 May 2023 09:31:08 +0000 Subject: automatic import of python-msprime --- .gitignore | 1 + python-msprime.spec | 172 ++++++++++++++++++++++++++++++++++++++++++++++++++++ sources | 1 + 3 files changed, 174 insertions(+) create mode 100644 python-msprime.spec create mode 100644 sources diff --git a/.gitignore b/.gitignore index e69de29..7376b00 100644 --- a/.gitignore +++ b/.gitignore @@ -0,0 +1 @@ +/msprime-1.2.0.tar.gz diff --git a/python-msprime.spec b/python-msprime.spec new file mode 100644 index 0000000..69e1e51 --- /dev/null +++ b/python-msprime.spec @@ -0,0 +1,172 @@ +%global _empty_manifest_terminate_build 0 +Name: python-msprime +Version: 1.2.0 +Release: 1 +Summary: Simulate genealogical trees and genomic sequence data using population genetic models +License: GNU GPLv3+ +URL: https://tskit.dev/msprime +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/e6/81/8b16831a9e58151da55fd63e13d052ba27ea647022b6555964115a38c6cd/msprime-1.2.0.tar.gz +BuildArch: noarch + +Requires: python3-numpy +Requires: python3-newick +Requires: python3-tskit +Requires: python3-demes + +%description +# msprime + + [![CircleCI](https://circleci.com/gh/tskit-dev/msprime.svg?style=svg)](https://circleci.com/gh/tskit-dev/msprime) [![codecov](https://codecov.io/gh/tskit-dev/msprime/branch/main/graph/badge.svg)](https://codecov.io/gh/tskit-dev/msprime) [![PyPI Downloads](https://pepy.tech/badge/msprime)](https://pepy.tech/project/msprime) [![Conda Downloads](https://anaconda.org/conda-forge/msprime/badges/downloads.svg)](https://anaconda.org/conda-forge/msprime) [![Docs Build](https://github.com/tskit-dev/msprime/actions/workflows/docs.yml/badge.svg)](https://github.com/tskit-dev/msprime/actions/workflows/docs.yml) [![Binary wheels](https://github.com/tskit-dev/msprime/actions/workflows/wheels.yml/badge.svg)](https://github.com/tskit-dev/msprime/actions/workflows/wheels.yml) [![Tests](https://github.com/tskit-dev/msprime/actions/workflows/tests.yml/badge.svg)](https://github.com/tskit-dev/msprime/actions/workflows/tests.yml) + + +``msprime`` is a population genetics simulator +based on [tskit](https://tskit.dev). Msprime can simulate random +ancestral histories for a sample of individuals +(consistent with a given demographic model) under a +range of different models and evolutionary processes. Msprime can +also simulate mutations on a given ancestral +history (which can be produced by msprime or other programs +supporting [tskit](https://tskit.dev)) under +a variety of genome sequence evolution models. + +Please see the [documentation](https://tskit.dev/msprime/docs/latest/) for +more details, including +[installation instructions](https://tskit.dev/msprime/docs/latest/installation.html). + + +### Research notice +Please note that this repository is participating in a study into sustainability +of open source projects. Data will be gathered about this repository for +approximately the next 12 months, starting from 2021-06-04. + +Data collected will include number of contributors, number of PRs, time taken to +close/merge these PRs, and issues closed. + +For more information, please visit +[our informational page](https://sustainable-open-science-and-software.github.io/) +or download our +[participant information sheet](https://sustainable-open-science-and-software.github.io/assets/PIS_sustainable_software.pdf). + + +%package -n python3-msprime +Summary: Simulate genealogical trees and genomic sequence data using population genetic models +Provides: python-msprime +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-msprime +# msprime + + [![CircleCI](https://circleci.com/gh/tskit-dev/msprime.svg?style=svg)](https://circleci.com/gh/tskit-dev/msprime) [![codecov](https://codecov.io/gh/tskit-dev/msprime/branch/main/graph/badge.svg)](https://codecov.io/gh/tskit-dev/msprime) [![PyPI Downloads](https://pepy.tech/badge/msprime)](https://pepy.tech/project/msprime) [![Conda Downloads](https://anaconda.org/conda-forge/msprime/badges/downloads.svg)](https://anaconda.org/conda-forge/msprime) [![Docs Build](https://github.com/tskit-dev/msprime/actions/workflows/docs.yml/badge.svg)](https://github.com/tskit-dev/msprime/actions/workflows/docs.yml) [![Binary wheels](https://github.com/tskit-dev/msprime/actions/workflows/wheels.yml/badge.svg)](https://github.com/tskit-dev/msprime/actions/workflows/wheels.yml) [![Tests](https://github.com/tskit-dev/msprime/actions/workflows/tests.yml/badge.svg)](https://github.com/tskit-dev/msprime/actions/workflows/tests.yml) + + +``msprime`` is a population genetics simulator +based on [tskit](https://tskit.dev). Msprime can simulate random +ancestral histories for a sample of individuals +(consistent with a given demographic model) under a +range of different models and evolutionary processes. Msprime can +also simulate mutations on a given ancestral +history (which can be produced by msprime or other programs +supporting [tskit](https://tskit.dev)) under +a variety of genome sequence evolution models. + +Please see the [documentation](https://tskit.dev/msprime/docs/latest/) for +more details, including +[installation instructions](https://tskit.dev/msprime/docs/latest/installation.html). + + +### Research notice +Please note that this repository is participating in a study into sustainability +of open source projects. Data will be gathered about this repository for +approximately the next 12 months, starting from 2021-06-04. + +Data collected will include number of contributors, number of PRs, time taken to +close/merge these PRs, and issues closed. + +For more information, please visit +[our informational page](https://sustainable-open-science-and-software.github.io/) +or download our +[participant information sheet](https://sustainable-open-science-and-software.github.io/assets/PIS_sustainable_software.pdf). + + +%package help +Summary: Development documents and examples for msprime +Provides: python3-msprime-doc +%description help +# msprime + + [![CircleCI](https://circleci.com/gh/tskit-dev/msprime.svg?style=svg)](https://circleci.com/gh/tskit-dev/msprime) [![codecov](https://codecov.io/gh/tskit-dev/msprime/branch/main/graph/badge.svg)](https://codecov.io/gh/tskit-dev/msprime) [![PyPI Downloads](https://pepy.tech/badge/msprime)](https://pepy.tech/project/msprime) [![Conda Downloads](https://anaconda.org/conda-forge/msprime/badges/downloads.svg)](https://anaconda.org/conda-forge/msprime) [![Docs Build](https://github.com/tskit-dev/msprime/actions/workflows/docs.yml/badge.svg)](https://github.com/tskit-dev/msprime/actions/workflows/docs.yml) [![Binary wheels](https://github.com/tskit-dev/msprime/actions/workflows/wheels.yml/badge.svg)](https://github.com/tskit-dev/msprime/actions/workflows/wheels.yml) [![Tests](https://github.com/tskit-dev/msprime/actions/workflows/tests.yml/badge.svg)](https://github.com/tskit-dev/msprime/actions/workflows/tests.yml) + + +``msprime`` is a population genetics simulator +based on [tskit](https://tskit.dev). Msprime can simulate random +ancestral histories for a sample of individuals +(consistent with a given demographic model) under a +range of different models and evolutionary processes. Msprime can +also simulate mutations on a given ancestral +history (which can be produced by msprime or other programs +supporting [tskit](https://tskit.dev)) under +a variety of genome sequence evolution models. + +Please see the [documentation](https://tskit.dev/msprime/docs/latest/) for +more details, including +[installation instructions](https://tskit.dev/msprime/docs/latest/installation.html). + + +### Research notice +Please note that this repository is participating in a study into sustainability +of open source projects. Data will be gathered about this repository for +approximately the next 12 months, starting from 2021-06-04. + +Data collected will include number of contributors, number of PRs, time taken to +close/merge these PRs, and issues closed. + +For more information, please visit +[our informational page](https://sustainable-open-science-and-software.github.io/) +or download our +[participant information sheet](https://sustainable-open-science-and-software.github.io/assets/PIS_sustainable_software.pdf). + + +%prep +%autosetup -n msprime-1.2.0 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-msprime -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Fri May 05 2023 Python_Bot - 1.2.0-1 +- Package Spec generated diff --git a/sources b/sources new file mode 100644 index 0000000..46b9eb3 --- /dev/null +++ b/sources @@ -0,0 +1 @@ +a3cba73118b710157ba00217e1c574a0 msprime-1.2.0.tar.gz -- cgit v1.2.3