From 9cfb9c1e27a4c24f30325d635ca24d6f703c98ca Mon Sep 17 00:00:00 2001 From: CoprDistGit Date: Fri, 5 May 2023 05:54:58 +0000 Subject: automatic import of python-napatrackmater --- python-napatrackmater.spec | 311 +++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 311 insertions(+) create mode 100644 python-napatrackmater.spec (limited to 'python-napatrackmater.spec') diff --git a/python-napatrackmater.spec b/python-napatrackmater.spec new file mode 100644 index 0000000..880fb71 --- /dev/null +++ b/python-napatrackmater.spec @@ -0,0 +1,311 @@ +%global _empty_manifest_terminate_build 0 +Name: python-napatrackmater +Version: 3.5.4 +Release: 1 +Summary: Import Trackmate XML files for Track Visualization and analysis in Napari. +License: MIT License +URL: https://github.com/kapoorlab/NapaTrackMater/ +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/14/91/848e4bd2bf71766c7a51f45a2c9ad8cff42f9349b27024ec4f37e476df42/napatrackmater-3.5.4.tar.gz +BuildArch: noarch + +Requires: python3-lxml +Requires: python3-vollseg +Requires: python3-napari +Requires: python3-natsort +Requires: python3-seaborn + +%description +# NapaTrackMater +Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 3D + time tracks. + +This repository is the bridge between the Fiji and Napari world for exporting and viewing the track XML files using [Napari track layer](https://napari.org/tutorials/fundamentals/tracks.html). + +[![Build Status](https://travis-ci.com/kapoorlab/napatrackmater.svg?branch=master)](https://travis-ci.com/github/kapoorlab/napatrackmater) +[![PyPI version](https://img.shields.io/pypi/v/napatrackmater.svg?maxAge=2591000)](https://pypi.org/project/napatrackmater/) + +## Installation +This package can be installed with: + +`pip install --user napatrackmater` + +If you are building this from the source, clone the repository and install via + +```bash +git clone https://github.com/kapoorlab/NapaTrackMater/ + +cd NapaTrackMater + +pip install --user -e . + +# or, to install in editable mode AND grab all of the developer tools +# (this is required if you want to contribute code back to NapaTrackMater) +pip install --user -r requirements.txt +``` + +### Pipenv install + +Pipenv allows you to install dependencies in a virtual environment. + +```bash +# install pipenv if you don't already have it installed +pip install --user pipenv + +# clone the repository and sync the dependencies +git clone https://github.com/kapoorlab/NapaTrackMater/ +cd NapaTrackMater +pipenv sync + +# make the current package available +pipenv run python setup.py develop + +# you can run the example notebooks by starting the jupyter notebook inside the virtual env +pipenv run jupyter notebook +``` + + +## Docker + +A Docker image can be used to run the code in a container. Once inside the project's directory, build the image with: + +~~~bash +docker build -t kapoorlab/NapaTrackMater . +~~~ + +Now to run the `track` command: + +~~~bash +# show help +docker run --rm -it kapoorlab/NapaTrackMater +# run it with example data +docker run --rm -it -v $(pwd)/examples/data:/input kapoorlab/NapaTrackMater track -f /input -r /input/Raw.tif -s /input/Seg.tif -s /input/Mask.tif -n test +~~~ + +## Requirements + +- Python 3.9 and above. + + +## License + +Under MIT license. See [LICENSE](LICENSE). + +## Authors + +- Varun Kapoor +- Mari Tolonen + + +%package -n python3-napatrackmater +Summary: Import Trackmate XML files for Track Visualization and analysis in Napari. +Provides: python-napatrackmater +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-napatrackmater +# NapaTrackMater +Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 3D + time tracks. + +This repository is the bridge between the Fiji and Napari world for exporting and viewing the track XML files using [Napari track layer](https://napari.org/tutorials/fundamentals/tracks.html). + +[![Build Status](https://travis-ci.com/kapoorlab/napatrackmater.svg?branch=master)](https://travis-ci.com/github/kapoorlab/napatrackmater) +[![PyPI version](https://img.shields.io/pypi/v/napatrackmater.svg?maxAge=2591000)](https://pypi.org/project/napatrackmater/) + +## Installation +This package can be installed with: + +`pip install --user napatrackmater` + +If you are building this from the source, clone the repository and install via + +```bash +git clone https://github.com/kapoorlab/NapaTrackMater/ + +cd NapaTrackMater + +pip install --user -e . + +# or, to install in editable mode AND grab all of the developer tools +# (this is required if you want to contribute code back to NapaTrackMater) +pip install --user -r requirements.txt +``` + +### Pipenv install + +Pipenv allows you to install dependencies in a virtual environment. + +```bash +# install pipenv if you don't already have it installed +pip install --user pipenv + +# clone the repository and sync the dependencies +git clone https://github.com/kapoorlab/NapaTrackMater/ +cd NapaTrackMater +pipenv sync + +# make the current package available +pipenv run python setup.py develop + +# you can run the example notebooks by starting the jupyter notebook inside the virtual env +pipenv run jupyter notebook +``` + + +## Docker + +A Docker image can be used to run the code in a container. Once inside the project's directory, build the image with: + +~~~bash +docker build -t kapoorlab/NapaTrackMater . +~~~ + +Now to run the `track` command: + +~~~bash +# show help +docker run --rm -it kapoorlab/NapaTrackMater +# run it with example data +docker run --rm -it -v $(pwd)/examples/data:/input kapoorlab/NapaTrackMater track -f /input -r /input/Raw.tif -s /input/Seg.tif -s /input/Mask.tif -n test +~~~ + +## Requirements + +- Python 3.9 and above. + + +## License + +Under MIT license. See [LICENSE](LICENSE). + +## Authors + +- Varun Kapoor +- Mari Tolonen + + +%package help +Summary: Development documents and examples for napatrackmater +Provides: python3-napatrackmater-doc +%description help +# NapaTrackMater +Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 3D + time tracks. + +This repository is the bridge between the Fiji and Napari world for exporting and viewing the track XML files using [Napari track layer](https://napari.org/tutorials/fundamentals/tracks.html). + +[![Build Status](https://travis-ci.com/kapoorlab/napatrackmater.svg?branch=master)](https://travis-ci.com/github/kapoorlab/napatrackmater) +[![PyPI version](https://img.shields.io/pypi/v/napatrackmater.svg?maxAge=2591000)](https://pypi.org/project/napatrackmater/) + +## Installation +This package can be installed with: + +`pip install --user napatrackmater` + +If you are building this from the source, clone the repository and install via + +```bash +git clone https://github.com/kapoorlab/NapaTrackMater/ + +cd NapaTrackMater + +pip install --user -e . + +# or, to install in editable mode AND grab all of the developer tools +# (this is required if you want to contribute code back to NapaTrackMater) +pip install --user -r requirements.txt +``` + +### Pipenv install + +Pipenv allows you to install dependencies in a virtual environment. + +```bash +# install pipenv if you don't already have it installed +pip install --user pipenv + +# clone the repository and sync the dependencies +git clone https://github.com/kapoorlab/NapaTrackMater/ +cd NapaTrackMater +pipenv sync + +# make the current package available +pipenv run python setup.py develop + +# you can run the example notebooks by starting the jupyter notebook inside the virtual env +pipenv run jupyter notebook +``` + + +## Docker + +A Docker image can be used to run the code in a container. Once inside the project's directory, build the image with: + +~~~bash +docker build -t kapoorlab/NapaTrackMater . +~~~ + +Now to run the `track` command: + +~~~bash +# show help +docker run --rm -it kapoorlab/NapaTrackMater +# run it with example data +docker run --rm -it -v $(pwd)/examples/data:/input kapoorlab/NapaTrackMater track -f /input -r /input/Raw.tif -s /input/Seg.tif -s /input/Mask.tif -n test +~~~ + +## Requirements + +- Python 3.9 and above. + + +## License + +Under MIT license. See [LICENSE](LICENSE). + +## Authors + +- Varun Kapoor +- Mari Tolonen + + +%prep +%autosetup -n napatrackmater-3.5.4 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-napatrackmater -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Fri May 05 2023 Python_Bot - 3.5.4-1 +- Package Spec generated -- cgit v1.2.3