From e00f228e5bc9782e24140caf2755a12324324cf9 Mon Sep 17 00:00:00 2001 From: CoprDistGit Date: Tue, 20 Jun 2023 08:26:24 +0000 Subject: automatic import of python-omc3 --- .gitignore | 1 + python-omc3.spec | 345 +++++++++++++++++++++++++++++++++++++++++++++++++++++++ sources | 1 + 3 files changed, 347 insertions(+) create mode 100644 python-omc3.spec create mode 100644 sources diff --git a/.gitignore b/.gitignore index e69de29..046c303 100644 --- a/.gitignore +++ b/.gitignore @@ -0,0 +1 @@ +/omc3-0.11.1.tar.gz diff --git a/python-omc3.spec b/python-omc3.spec new file mode 100644 index 0000000..8a61589 --- /dev/null +++ b/python-omc3.spec @@ -0,0 +1,345 @@ +%global _empty_manifest_terminate_build 0 +Name: python-omc3 +Version: 0.11.1 +Release: 1 +Summary: An accelerator physics tools package for the OMC team at CERN. +License: MIT +URL: https://github.com/pylhc/omc3 +Source0: https://mirrors.aliyun.com/pypi/web/packages/04/a6/2147fcea72855ca65ddca208f25f8903969ab2ba9a7cc3f016a38c94861e/omc3-0.11.1.tar.gz +BuildArch: noarch + +Requires: python3-matplotlib +Requires: python3-Pillow +Requires: python3-numpy +Requires: python3-pandas +Requires: python3-scipy +Requires: python3-scikit-learn +Requires: python3-tfs-pandas +Requires: python3-generic-parser +Requires: python3-sdds +Requires: python3-h5py +Requires: python3-tables +Requires: python3-uncertainties +Requires: python3-optics-functions +Requires: python3-turn-by-turn +Requires: python3-requests +Requires: python3-jpype1 +Requires: python3-pytimber +Requires: python3-pylogbook +Requires: python3-kerberos +Requires: python3-pymupdf +Requires: python3-qtpy +Requires: python3-pytest +Requires: python3-pytest-cov +Requires: python3-pytest-timeout +Requires: python3-hypothesis +Requires: python3-attrs +Requires: python3-sphinx +Requires: python3-sphinx-rtd-theme +Requires: python3-jpype1 +Requires: python3-pytimber +Requires: python3-pylogbook +Requires: python3-kerberos +Requires: python3-sphinx +Requires: python3-sphinx-rtd-theme +Requires: python3-pymupdf +Requires: python3-qtpy +Requires: python3-pytest +Requires: python3-pytest-cov +Requires: python3-pytest-timeout +Requires: python3-hypothesis +Requires: python3-jpype1 +Requires: python3-attrs + +%description +# 3 + +[![Tests](https://github.com/pylhc/omc3/actions/workflows/coverage.yml/badge.svg?branch=master)](https://github.com/pylhc/omc3/actions/workflows/coverage.yml) +[![Code Climate coverage](https://img.shields.io/codeclimate/coverage/pylhc/omc3.svg?style=popout)](https://codeclimate.com/github/pylhc/omc3) +[![Code Climate maintainability (percentage)](https://img.shields.io/codeclimate/maintainability-percentage/pylhc/omc3.svg?style=popout)](https://codeclimate.com/github/pylhc/omc3) +[![GitHub last commit](https://img.shields.io/github/last-commit/pylhc/omc3.svg?style=popout)](https://github.com/pylhc/omc3/) +[![GitHub release](https://img.shields.io/github/release/pylhc/omc3.svg?style=popout)](https://github.com/pylhc/omc3/) +[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.5705625.svg)](https://doi.org/10.5281/zenodo.5705625) + +This is the python-tool package of the Optics Measurements and Corrections team (OMC) at CERN. + +Most of the codes are generic and not limited to CERN accelerators, and the package can easily be used for your favorite circular accelerator. +To see how to adapt this for your machine, see our [documentation](https://pylhc.github.io/omc3/), `Model` section. +To contribute, see [our guidelines](https://pylhc.github.io/packages/development/contributing/) on the OMC website. + +## Documentation + +- Autogenerated docs via `Sphinx` can be found at . +- General documentation of the OMC Team is located at . + +## Installing + +Installation is easily done via `pip`: + +``` +pip install omc3 +``` + + +For development purposes, we recommend creating a new virtual environment and installing from VCS in editable mode with all extra dependencies (`cern` for packages only available in the CERN GPN, `test` for `pytest` and relevant plugins, and `doc` for packages needed to build documentation) +```bash +git clone https://github.com/pylhc/omc3 +pip install --editable "omc3[all]" +``` + +Codes can then be run with either `python -m omc3.SCRIPT --FLAG ARGUMENT` or calling the `.py` file directly. + +## Functionality + +#### Main Scripts + +Main scripts to be executed lie in the [`/omc3`](omc3) directory. These include: +- `global_correction.py` to calculate corrections from measurement files. +- `hole_in_one.py` to perform frequency analysis on turn by turn BPM data and infer optics (and more) for a given accelerator. +- `madx_wrapper.py` to start a `MAD-X` run with a file or string as input. +- `model_creator.py` to generate optics models required for optics analysis. +- `response_creator.py` to provide correction response files. +- `run_kmod.py` to analyze data from K-modulation and return the measured optics functions. +- `tbt_converter.py` to convert different turn by turn data types to `SDDS`, potentially adding noise. +- `amplitude_detuning_analysis.py` to perform amp. det. analysis on optics data with tune correction. +- `knob_extractor.py` to extract from `NXCALS` the value of given knobs in the machine at a given time. + +#### Plotting Scripts + +Plotting scripts for analysis outputs can be found in [`/omc3/plotting`](omc3/plotting): +- `plot_spectrum.py` to generate plots from files generated by frequency analysis. +- `plot_bbq.py` to generate plots from files generated by BBQ analysis. +- `plot_amplitude_detuning.py` to generate plots from files generated by amplitude detuning analysis. +- `plot_optics_measurements.py` to generate plots from files generated by optics_measurements. +- `plot_tfs.py` all-purpose tfs-file plotter. + +#### Other Scripts + +Other general utility scripts are in [`/omc3/scripts`](omc3/scripts): +- `update_nattune_in_linfile.py` to update the natural tune columns in the lin files by finding the highest peak in the spectrum in a given interval. +- `write_madx_macros.py` to generate `MAD-X` tracking macros with observation points from a TWISS file. +- `merge_kmod_results.py` to merge LSA results files created by kmod, and add the luminosity imbalance if the 4 needed IP/Beam files combination are present. +- `fake_measurement_from_model.py` to create a fake measurement based on a model TWISS file. +- `betabeatsrc_output_converter.py` to convert outputs from our old codes to `omc3`'s new standardized format. +- `linfile_clean.py` to automatically clean given columns in lin files. + +Example use for these scripts can be found in the [`tests`](tests) files. +Documentation including relevant flags and parameters can be found at . + +## License + +This project is licensed under the `MIT License` - see the [LICENSE](LICENSE) file for details. + + +%package -n python3-omc3 +Summary: An accelerator physics tools package for the OMC team at CERN. +Provides: python-omc3 +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-omc3 +# 3 + +[![Tests](https://github.com/pylhc/omc3/actions/workflows/coverage.yml/badge.svg?branch=master)](https://github.com/pylhc/omc3/actions/workflows/coverage.yml) +[![Code Climate coverage](https://img.shields.io/codeclimate/coverage/pylhc/omc3.svg?style=popout)](https://codeclimate.com/github/pylhc/omc3) +[![Code Climate maintainability (percentage)](https://img.shields.io/codeclimate/maintainability-percentage/pylhc/omc3.svg?style=popout)](https://codeclimate.com/github/pylhc/omc3) +[![GitHub last commit](https://img.shields.io/github/last-commit/pylhc/omc3.svg?style=popout)](https://github.com/pylhc/omc3/) +[![GitHub release](https://img.shields.io/github/release/pylhc/omc3.svg?style=popout)](https://github.com/pylhc/omc3/) +[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.5705625.svg)](https://doi.org/10.5281/zenodo.5705625) + +This is the python-tool package of the Optics Measurements and Corrections team (OMC) at CERN. + +Most of the codes are generic and not limited to CERN accelerators, and the package can easily be used for your favorite circular accelerator. +To see how to adapt this for your machine, see our [documentation](https://pylhc.github.io/omc3/), `Model` section. +To contribute, see [our guidelines](https://pylhc.github.io/packages/development/contributing/) on the OMC website. + +## Documentation + +- Autogenerated docs via `Sphinx` can be found at . +- General documentation of the OMC Team is located at . + +## Installing + +Installation is easily done via `pip`: + +``` +pip install omc3 +``` + + +For development purposes, we recommend creating a new virtual environment and installing from VCS in editable mode with all extra dependencies (`cern` for packages only available in the CERN GPN, `test` for `pytest` and relevant plugins, and `doc` for packages needed to build documentation) +```bash +git clone https://github.com/pylhc/omc3 +pip install --editable "omc3[all]" +``` + +Codes can then be run with either `python -m omc3.SCRIPT --FLAG ARGUMENT` or calling the `.py` file directly. + +## Functionality + +#### Main Scripts + +Main scripts to be executed lie in the [`/omc3`](omc3) directory. These include: +- `global_correction.py` to calculate corrections from measurement files. +- `hole_in_one.py` to perform frequency analysis on turn by turn BPM data and infer optics (and more) for a given accelerator. +- `madx_wrapper.py` to start a `MAD-X` run with a file or string as input. +- `model_creator.py` to generate optics models required for optics analysis. +- `response_creator.py` to provide correction response files. +- `run_kmod.py` to analyze data from K-modulation and return the measured optics functions. +- `tbt_converter.py` to convert different turn by turn data types to `SDDS`, potentially adding noise. +- `amplitude_detuning_analysis.py` to perform amp. det. analysis on optics data with tune correction. +- `knob_extractor.py` to extract from `NXCALS` the value of given knobs in the machine at a given time. + +#### Plotting Scripts + +Plotting scripts for analysis outputs can be found in [`/omc3/plotting`](omc3/plotting): +- `plot_spectrum.py` to generate plots from files generated by frequency analysis. +- `plot_bbq.py` to generate plots from files generated by BBQ analysis. +- `plot_amplitude_detuning.py` to generate plots from files generated by amplitude detuning analysis. +- `plot_optics_measurements.py` to generate plots from files generated by optics_measurements. +- `plot_tfs.py` all-purpose tfs-file plotter. + +#### Other Scripts + +Other general utility scripts are in [`/omc3/scripts`](omc3/scripts): +- `update_nattune_in_linfile.py` to update the natural tune columns in the lin files by finding the highest peak in the spectrum in a given interval. +- `write_madx_macros.py` to generate `MAD-X` tracking macros with observation points from a TWISS file. +- `merge_kmod_results.py` to merge LSA results files created by kmod, and add the luminosity imbalance if the 4 needed IP/Beam files combination are present. +- `fake_measurement_from_model.py` to create a fake measurement based on a model TWISS file. +- `betabeatsrc_output_converter.py` to convert outputs from our old codes to `omc3`'s new standardized format. +- `linfile_clean.py` to automatically clean given columns in lin files. + +Example use for these scripts can be found in the [`tests`](tests) files. +Documentation including relevant flags and parameters can be found at . + +## License + +This project is licensed under the `MIT License` - see the [LICENSE](LICENSE) file for details. + + +%package help +Summary: Development documents and examples for omc3 +Provides: python3-omc3-doc +%description help +# 3 + +[![Tests](https://github.com/pylhc/omc3/actions/workflows/coverage.yml/badge.svg?branch=master)](https://github.com/pylhc/omc3/actions/workflows/coverage.yml) +[![Code Climate coverage](https://img.shields.io/codeclimate/coverage/pylhc/omc3.svg?style=popout)](https://codeclimate.com/github/pylhc/omc3) +[![Code Climate maintainability (percentage)](https://img.shields.io/codeclimate/maintainability-percentage/pylhc/omc3.svg?style=popout)](https://codeclimate.com/github/pylhc/omc3) +[![GitHub last commit](https://img.shields.io/github/last-commit/pylhc/omc3.svg?style=popout)](https://github.com/pylhc/omc3/) +[![GitHub release](https://img.shields.io/github/release/pylhc/omc3.svg?style=popout)](https://github.com/pylhc/omc3/) +[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.5705625.svg)](https://doi.org/10.5281/zenodo.5705625) + +This is the python-tool package of the Optics Measurements and Corrections team (OMC) at CERN. + +Most of the codes are generic and not limited to CERN accelerators, and the package can easily be used for your favorite circular accelerator. +To see how to adapt this for your machine, see our [documentation](https://pylhc.github.io/omc3/), `Model` section. +To contribute, see [our guidelines](https://pylhc.github.io/packages/development/contributing/) on the OMC website. + +## Documentation + +- Autogenerated docs via `Sphinx` can be found at . +- General documentation of the OMC Team is located at . + +## Installing + +Installation is easily done via `pip`: + +``` +pip install omc3 +``` + + +For development purposes, we recommend creating a new virtual environment and installing from VCS in editable mode with all extra dependencies (`cern` for packages only available in the CERN GPN, `test` for `pytest` and relevant plugins, and `doc` for packages needed to build documentation) +```bash +git clone https://github.com/pylhc/omc3 +pip install --editable "omc3[all]" +``` + +Codes can then be run with either `python -m omc3.SCRIPT --FLAG ARGUMENT` or calling the `.py` file directly. + +## Functionality + +#### Main Scripts + +Main scripts to be executed lie in the [`/omc3`](omc3) directory. These include: +- `global_correction.py` to calculate corrections from measurement files. +- `hole_in_one.py` to perform frequency analysis on turn by turn BPM data and infer optics (and more) for a given accelerator. +- `madx_wrapper.py` to start a `MAD-X` run with a file or string as input. +- `model_creator.py` to generate optics models required for optics analysis. +- `response_creator.py` to provide correction response files. +- `run_kmod.py` to analyze data from K-modulation and return the measured optics functions. +- `tbt_converter.py` to convert different turn by turn data types to `SDDS`, potentially adding noise. +- `amplitude_detuning_analysis.py` to perform amp. det. analysis on optics data with tune correction. +- `knob_extractor.py` to extract from `NXCALS` the value of given knobs in the machine at a given time. + +#### Plotting Scripts + +Plotting scripts for analysis outputs can be found in [`/omc3/plotting`](omc3/plotting): +- `plot_spectrum.py` to generate plots from files generated by frequency analysis. +- `plot_bbq.py` to generate plots from files generated by BBQ analysis. +- `plot_amplitude_detuning.py` to generate plots from files generated by amplitude detuning analysis. +- `plot_optics_measurements.py` to generate plots from files generated by optics_measurements. +- `plot_tfs.py` all-purpose tfs-file plotter. + +#### Other Scripts + +Other general utility scripts are in [`/omc3/scripts`](omc3/scripts): +- `update_nattune_in_linfile.py` to update the natural tune columns in the lin files by finding the highest peak in the spectrum in a given interval. +- `write_madx_macros.py` to generate `MAD-X` tracking macros with observation points from a TWISS file. +- `merge_kmod_results.py` to merge LSA results files created by kmod, and add the luminosity imbalance if the 4 needed IP/Beam files combination are present. +- `fake_measurement_from_model.py` to create a fake measurement based on a model TWISS file. +- `betabeatsrc_output_converter.py` to convert outputs from our old codes to `omc3`'s new standardized format. +- `linfile_clean.py` to automatically clean given columns in lin files. + +Example use for these scripts can be found in the [`tests`](tests) files. +Documentation including relevant flags and parameters can be found at . + +## License + +This project is licensed under the `MIT License` - see the [LICENSE](LICENSE) file for details. + + +%prep +%autosetup -n omc3-0.11.1 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-omc3 -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Tue Jun 20 2023 Python_Bot - 0.11.1-1 +- Package Spec generated diff --git a/sources b/sources new file mode 100644 index 0000000..f6e5c10 --- /dev/null +++ b/sources @@ -0,0 +1 @@ +3f3b600e8c6ab206687d49a610a0a66c omc3-0.11.1.tar.gz -- cgit v1.2.3