From de0f6733a477dadded71aaad6891fcf7110c96f7 Mon Sep 17 00:00:00 2001
From: CoprDistGit <infra@openeuler.org>
Date: Thu, 18 May 2023 06:56:43 +0000
Subject: automatic import of python-oxdna-analysis-tools

---
 .gitignore                       |   1 +
 python-oxdna-analysis-tools.spec | 106 +++++++++++++++++++++++++++++++++++++++
 sources                          |   1 +
 3 files changed, 108 insertions(+)
 create mode 100644 python-oxdna-analysis-tools.spec
 create mode 100644 sources

diff --git a/.gitignore b/.gitignore
index e69de29..be49972 100644
--- a/.gitignore
+++ b/.gitignore
@@ -0,0 +1 @@
+/oxDNA_analysis_tools-2.0.3.tar.gz
diff --git a/python-oxdna-analysis-tools.spec b/python-oxdna-analysis-tools.spec
new file mode 100644
index 0000000..52dd406
--- /dev/null
+++ b/python-oxdna-analysis-tools.spec
@@ -0,0 +1,106 @@
+%global _empty_manifest_terminate_build 0
+Name:		python-oxDNA-analysis-tools
+Version:	2.0.3
+Release:	1
+Summary:	Python scripts and libraries for structural analysis of oxDNA simulations.
+License:	GNU General Public License v3 (GPLv3)
+URL:		https://github.com/sulcgroup/oxdna_analysis_tools
+Source0:	https://mirrors.nju.edu.cn/pypi/web/packages/ec/87/0ca423a5c8229bc22b04bb715c4836ad5a9529ce760444aeedfc47867980/oxDNA_analysis_tools-2.0.3.tar.gz
+BuildArch:	noarch
+
+Requires:	python3-numpy
+Requires:	python3-scikit-learn
+Requires:	python3-matplotlib
+Requires:	python3-biopython
+
+%description
+## Using oxDNA analysis tools
+Once installed, all standalone scripts can be called from the command line via the following invocation:  
+`oat <script name> <script arguments>`  
+For example, to compute the mean structure and deviations of a file called `trajectory.dat` using 4 CPUs and outputting to files called `mean.dat` and `devs.json`, you would run:  
+`oat mean -p 4 -o mean.dat -d devs.json trajectory.dat`
+To see a detailed description of the script command line arguments, run the script with the `-h` flag.
+For a full list of scripts and arguments, please see the [documentation](https://lorenzo-rovigatti.github.io/oxDNA/oat/cli.html).
+These scripts are intended to be extensible and re-used for custom analysis by users.  The functions in this library can be imported into your Python scripts via:  
+`from oxDNA_analysis_tools.<script name> import <object name>`
+So for example, if you would like to use the file reader, you would include the following in your imports:  
+`from oxDNA_analysis_tools.UTILS.RyeReader import describe, get_confs`
+
+%package -n python3-oxDNA-analysis-tools
+Summary:	Python scripts and libraries for structural analysis of oxDNA simulations.
+Provides:	python-oxDNA-analysis-tools
+BuildRequires:	python3-devel
+BuildRequires:	python3-setuptools
+BuildRequires:	python3-pip
+%description -n python3-oxDNA-analysis-tools
+## Using oxDNA analysis tools
+Once installed, all standalone scripts can be called from the command line via the following invocation:  
+`oat <script name> <script arguments>`  
+For example, to compute the mean structure and deviations of a file called `trajectory.dat` using 4 CPUs and outputting to files called `mean.dat` and `devs.json`, you would run:  
+`oat mean -p 4 -o mean.dat -d devs.json trajectory.dat`
+To see a detailed description of the script command line arguments, run the script with the `-h` flag.
+For a full list of scripts and arguments, please see the [documentation](https://lorenzo-rovigatti.github.io/oxDNA/oat/cli.html).
+These scripts are intended to be extensible and re-used for custom analysis by users.  The functions in this library can be imported into your Python scripts via:  
+`from oxDNA_analysis_tools.<script name> import <object name>`
+So for example, if you would like to use the file reader, you would include the following in your imports:  
+`from oxDNA_analysis_tools.UTILS.RyeReader import describe, get_confs`
+
+%package help
+Summary:	Development documents and examples for oxDNA-analysis-tools
+Provides:	python3-oxDNA-analysis-tools-doc
+%description help
+## Using oxDNA analysis tools
+Once installed, all standalone scripts can be called from the command line via the following invocation:  
+`oat <script name> <script arguments>`  
+For example, to compute the mean structure and deviations of a file called `trajectory.dat` using 4 CPUs and outputting to files called `mean.dat` and `devs.json`, you would run:  
+`oat mean -p 4 -o mean.dat -d devs.json trajectory.dat`
+To see a detailed description of the script command line arguments, run the script with the `-h` flag.
+For a full list of scripts and arguments, please see the [documentation](https://lorenzo-rovigatti.github.io/oxDNA/oat/cli.html).
+These scripts are intended to be extensible and re-used for custom analysis by users.  The functions in this library can be imported into your Python scripts via:  
+`from oxDNA_analysis_tools.<script name> import <object name>`
+So for example, if you would like to use the file reader, you would include the following in your imports:  
+`from oxDNA_analysis_tools.UTILS.RyeReader import describe, get_confs`
+
+%prep
+%autosetup -n oxDNA-analysis-tools-2.0.3
+
+%build
+%py3_build
+
+%install
+%py3_install
+install -d -m755 %{buildroot}/%{_pkgdocdir}
+if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
+if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
+if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
+if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
+pushd %{buildroot}
+if [ -d usr/lib ]; then
+	find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/lib64 ]; then
+	find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/bin ]; then
+	find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/sbin ]; then
+	find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+touch doclist.lst
+if [ -d usr/share/man ]; then
+	find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
+fi
+popd
+mv %{buildroot}/filelist.lst .
+mv %{buildroot}/doclist.lst .
+
+%files -n python3-oxDNA-analysis-tools -f filelist.lst
+%dir %{python3_sitelib}/*
+
+%files help -f doclist.lst
+%{_docdir}/*
+
+%changelog
+* Thu May 18 2023 Python_Bot <Python_Bot@openeuler.org> - 2.0.3-1
+- Package Spec generated
diff --git a/sources b/sources
new file mode 100644
index 0000000..162f8a1
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+969491c343414b7f49ce79567c3034dd  oxDNA_analysis_tools-2.0.3.tar.gz
-- 
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