automatic import of python-ppdyn

3 files changed, 473 insertions, 0 deletions

diff --git a/.gitignore b/.gitignore
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--- a/.gitignore
+++ b/.gitignore
@@ -0,0 +1 @@
+/PPDyn-1.0.8.tar.gz
diff --git a/python-ppdyn.spec b/python-ppdyn.spec
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index 0000000..495a228
--- /dev/null
+++ b/python-ppdyn.spec
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+%global _empty_manifest_terminate_build 0
+Name:		python-PPDyn
+Version:	1.0.8
+Release:	1
+Summary:	A python package to simulate plasma particles using Molecular Dynamics Algorithm.
+License:	MIT
+URL:		https://github.com/sayanadhikari/PPDyn
+Source0:	https://mirrors.nju.edu.cn/pypi/web/packages/47/32/888222ac9d0fb72b0dfb47a9cec03b33ba39c6b062a456edf1af85be62c2/PPDyn-1.0.8.tar.gz
+BuildArch:	noarch
+
+Requires:	python3-numpy
+Requires:	python3-scipy
+Requires:	python3-ini-parser
+Requires:	python3-numba
+Requires:	python3-h5py
+Requires:	python3-matplotlib
+
+%description
+# PPDyn (Plasma Particle Dynamics)
+[![CI](https://github.com/sayanadhikari/PPDyn/actions/workflows/main.yml/badge.svg)](https://github.com/sayanadhikari/PPDyn/actions/workflows/main.yml)
+[![build](https://github.com/sayanadhikari/PPDyn/actions/workflows/make.yml/badge.svg)](https://github.com/sayanadhikari/PPDyn/actions/workflows/make.yml)
+[![DOI](https://zenodo.org/badge/349242730.svg)](https://zenodo.org/badge/latestdoi/349242730)
+[![Documentation Status](https://readthedocs.org/projects/ppdyn/badge/?version=latest)](https://ppdyn.readthedocs.io/en/latest/?badge=latest)
+[![PyPI Version](https://img.shields.io/pypi/v/ppdyn.svg)](https://pypi.org/project/PPDyn/)
+
+A python code to simulate plasma particles using Molecular Dynamics Algorithm. [Numba JIT compiler](https://numba.pydata.org/) for Python has been implemented for faster performance.
+
+A detailed documentation can be found at https://ppdyn.readthedocs.io/.
+
+<!-- <video src="assets/videos/Plasma Particle Dynamics using Molecular Dynamics Method.mp4" poster="assets/images/ppdyn_poster.png" width="320" height="200" controls preload></video> -->
+
+Example:
+<!--[![PPDyn Example]()](https://user-images.githubusercontent.com/11753189/114286735-b5f26900-9a61-11eb-86ba-76ee295d6448.mp4)-->
+
+
+[![PPDyn Example](http://img.youtube.com/vi/qvQRUX-rSrQ/0.jpg)](https://www.youtube.com/embed/qvQRUX-rSrQ)
+
+
+## Problem
+<!--Rayleigh Problem = gas between 2 plates ([Alexander & Garcia, 1997](https://doi.org/10.1063/1.168619)) -->
+
+## Contributors
+- [Sayan Adhikari](https://github.com/sayanadhikari), UiO, Norway. [@sayanadhikari](https://twitter.com/sayanadhikari)
+- [Rupak Mukherjee](https://github.com/RupakMukherjee), PPPL, USA.
+
+## Installation
+### Prerequisites
+1. [GNU Make](https://www.gnu.org/software/make/)
+2. [python3 or higher](https://www.python.org/download/releases/3.0/)
+3. [git](https://git-scm.com/)
+
+### Procedure
+#### Using PyPI
+```bash
+pip install PPDyn
+```
+*Usage*
+
+Download the input template to your working directory
+```shell
+wget https://raw.githubusercontent.com/sayanadhikari/PPDyn/main/input.ini
+```
+Now, either create a python script in your working directory or use your python console
+```python
+from PPDyn import ppdyn
+from PPDyn.ppdplot import animate
+import time
+
+start = time.time()
+ppdyn(input)
+end = time.time()
+print("Elapsed (after compilation) = %s"%(end - start)+" seconds")
+animate()
+```
+#### Using GNU Make
+First make a clone of the master branch using the following command
+```shell
+git clone https://github.com/sayanadhikari/PPDyn.git
+```
+Then enter inside the *PPDyn* directory
+```shell
+cd PPDyn
+```
+Now complile and built the *PPDyn* code
+```shell
+make all
+```
+*Usage*
+
+Upon successful compilation, run the code using following command
+```shell
+ppdyn -i input.ini
+```
+## Parameter Setup
+Edit the _input.ini_ and run the code again. The basic structure of _input.ini_ is provided below,
+```ini
+;
+; @file		input.ini
+; @brief	PPDyn inputfile.
+;
+scope = default
+
+[simbox]
+Lx  = 10.0    ; System length in X
+Ly  = 10.0    ; System length in Y
+Lz  = 10.0    ; System length in Z
+
+[particles]
+N     = 700     ; Number of particles
+Vxmax = 1.0     ; Maximum velocity in X
+Vymax = 1.0     ; Maximum velocity in Y
+Vzmax = 1.0     ; Maximum velocity in Z
+Temp  = 0.01   ;
+
+[screening]
+k = 1.0
+
+[boundary]
+btype = reflecting ; Type of boundary Options: periodic, reflecting
+
+[time]
+tmax  = 1000.0    ; Final time
+dt    = 0.010   ; time step size
+
+[diagnostics]
+dumpPeriod  = 50    ; Data dump period
+dumpData    = True
+vtkData     = False
+
+[options]
+parallelMode  = True  ;set to false to disable parallel
+```
+## Visualization
+For visualization, user either can use the python scripts available inside ``scripts`` directory or can write their own. After successful run the data will be available under ``data`` directory. Two different data formats are available at present. The complete dataset will available under the name particle.hdf5. For vtk visualization users can use ``.vtu`` files inside ``data/vtkdata``. [Paraview](https://www.paraview.org/) can be used to animate particle dynamics very easily. A sample video can be found [here](https://www.youtube.com/embed/qvQRUX-rSrQ).
+
+
+## Contributing
+We welcome contributions to this project.
+
+1. Fork it.
+2. Create your feature branch (```git checkout -b my-new-feature```).
+3. Commit your changes (```git commit -am 'Add some feature'```).
+4. Push to the branch (```git push origin my-new-feature```).
+5. Create new Pull Request.
+
+## License
+Released under the [MIT license](LICENSE).
+
+
+
+
+%package -n python3-PPDyn
+Summary:	A python package to simulate plasma particles using Molecular Dynamics Algorithm.
+Provides:	python-PPDyn
+BuildRequires:	python3-devel
+BuildRequires:	python3-setuptools
+BuildRequires:	python3-pip
+%description -n python3-PPDyn
+# PPDyn (Plasma Particle Dynamics)
+[![CI](https://github.com/sayanadhikari/PPDyn/actions/workflows/main.yml/badge.svg)](https://github.com/sayanadhikari/PPDyn/actions/workflows/main.yml)
+[![build](https://github.com/sayanadhikari/PPDyn/actions/workflows/make.yml/badge.svg)](https://github.com/sayanadhikari/PPDyn/actions/workflows/make.yml)
+[![DOI](https://zenodo.org/badge/349242730.svg)](https://zenodo.org/badge/latestdoi/349242730)
+[![Documentation Status](https://readthedocs.org/projects/ppdyn/badge/?version=latest)](https://ppdyn.readthedocs.io/en/latest/?badge=latest)
+[![PyPI Version](https://img.shields.io/pypi/v/ppdyn.svg)](https://pypi.org/project/PPDyn/)
+
+A python code to simulate plasma particles using Molecular Dynamics Algorithm. [Numba JIT compiler](https://numba.pydata.org/) for Python has been implemented for faster performance.
+
+A detailed documentation can be found at https://ppdyn.readthedocs.io/.
+
+<!-- <video src="assets/videos/Plasma Particle Dynamics using Molecular Dynamics Method.mp4" poster="assets/images/ppdyn_poster.png" width="320" height="200" controls preload></video> -->
+
+Example:
+<!--[![PPDyn Example]()](https://user-images.githubusercontent.com/11753189/114286735-b5f26900-9a61-11eb-86ba-76ee295d6448.mp4)-->
+
+
+[![PPDyn Example](http://img.youtube.com/vi/qvQRUX-rSrQ/0.jpg)](https://www.youtube.com/embed/qvQRUX-rSrQ)
+
+
+## Problem
+<!--Rayleigh Problem = gas between 2 plates ([Alexander & Garcia, 1997](https://doi.org/10.1063/1.168619)) -->
+
+## Contributors
+- [Sayan Adhikari](https://github.com/sayanadhikari), UiO, Norway. [@sayanadhikari](https://twitter.com/sayanadhikari)
+- [Rupak Mukherjee](https://github.com/RupakMukherjee), PPPL, USA.
+
+## Installation
+### Prerequisites
+1. [GNU Make](https://www.gnu.org/software/make/)
+2. [python3 or higher](https://www.python.org/download/releases/3.0/)
+3. [git](https://git-scm.com/)
+
+### Procedure
+#### Using PyPI
+```bash
+pip install PPDyn
+```
+*Usage*
+
+Download the input template to your working directory
+```shell
+wget https://raw.githubusercontent.com/sayanadhikari/PPDyn/main/input.ini
+```
+Now, either create a python script in your working directory or use your python console
+```python
+from PPDyn import ppdyn
+from PPDyn.ppdplot import animate
+import time
+
+start = time.time()
+ppdyn(input)
+end = time.time()
+print("Elapsed (after compilation) = %s"%(end - start)+" seconds")
+animate()
+```
+#### Using GNU Make
+First make a clone of the master branch using the following command
+```shell
+git clone https://github.com/sayanadhikari/PPDyn.git
+```
+Then enter inside the *PPDyn* directory
+```shell
+cd PPDyn
+```
+Now complile and built the *PPDyn* code
+```shell
+make all
+```
+*Usage*
+
+Upon successful compilation, run the code using following command
+```shell
+ppdyn -i input.ini
+```
+## Parameter Setup
+Edit the _input.ini_ and run the code again. The basic structure of _input.ini_ is provided below,
+```ini
+;
+; @file		input.ini
+; @brief	PPDyn inputfile.
+;
+scope = default
+
+[simbox]
+Lx  = 10.0    ; System length in X
+Ly  = 10.0    ; System length in Y
+Lz  = 10.0    ; System length in Z
+
+[particles]
+N     = 700     ; Number of particles
+Vxmax = 1.0     ; Maximum velocity in X
+Vymax = 1.0     ; Maximum velocity in Y
+Vzmax = 1.0     ; Maximum velocity in Z
+Temp  = 0.01   ;
+
+[screening]
+k = 1.0
+
+[boundary]
+btype = reflecting ; Type of boundary Options: periodic, reflecting
+
+[time]
+tmax  = 1000.0    ; Final time
+dt    = 0.010   ; time step size
+
+[diagnostics]
+dumpPeriod  = 50    ; Data dump period
+dumpData    = True
+vtkData     = False
+
+[options]
+parallelMode  = True  ;set to false to disable parallel
+```
+## Visualization
+For visualization, user either can use the python scripts available inside ``scripts`` directory or can write their own. After successful run the data will be available under ``data`` directory. Two different data formats are available at present. The complete dataset will available under the name particle.hdf5. For vtk visualization users can use ``.vtu`` files inside ``data/vtkdata``. [Paraview](https://www.paraview.org/) can be used to animate particle dynamics very easily. A sample video can be found [here](https://www.youtube.com/embed/qvQRUX-rSrQ).
+
+
+## Contributing
+We welcome contributions to this project.
+
+1. Fork it.
+2. Create your feature branch (```git checkout -b my-new-feature```).
+3. Commit your changes (```git commit -am 'Add some feature'```).
+4. Push to the branch (```git push origin my-new-feature```).
+5. Create new Pull Request.
+
+## License
+Released under the [MIT license](LICENSE).
+
+
+
+
+%package help
+Summary:	Development documents and examples for PPDyn
+Provides:	python3-PPDyn-doc
+%description help
+# PPDyn (Plasma Particle Dynamics)
+[![CI](https://github.com/sayanadhikari/PPDyn/actions/workflows/main.yml/badge.svg)](https://github.com/sayanadhikari/PPDyn/actions/workflows/main.yml)
+[![build](https://github.com/sayanadhikari/PPDyn/actions/workflows/make.yml/badge.svg)](https://github.com/sayanadhikari/PPDyn/actions/workflows/make.yml)
+[![DOI](https://zenodo.org/badge/349242730.svg)](https://zenodo.org/badge/latestdoi/349242730)
+[![Documentation Status](https://readthedocs.org/projects/ppdyn/badge/?version=latest)](https://ppdyn.readthedocs.io/en/latest/?badge=latest)
+[![PyPI Version](https://img.shields.io/pypi/v/ppdyn.svg)](https://pypi.org/project/PPDyn/)
+
+A python code to simulate plasma particles using Molecular Dynamics Algorithm. [Numba JIT compiler](https://numba.pydata.org/) for Python has been implemented for faster performance.
+
+A detailed documentation can be found at https://ppdyn.readthedocs.io/.
+
+<!-- <video src="assets/videos/Plasma Particle Dynamics using Molecular Dynamics Method.mp4" poster="assets/images/ppdyn_poster.png" width="320" height="200" controls preload></video> -->
+
+Example:
+<!--[![PPDyn Example]()](https://user-images.githubusercontent.com/11753189/114286735-b5f26900-9a61-11eb-86ba-76ee295d6448.mp4)-->
+
+
+[![PPDyn Example](http://img.youtube.com/vi/qvQRUX-rSrQ/0.jpg)](https://www.youtube.com/embed/qvQRUX-rSrQ)
+
+
+## Problem
+<!--Rayleigh Problem = gas between 2 plates ([Alexander & Garcia, 1997](https://doi.org/10.1063/1.168619)) -->
+
+## Contributors
+- [Sayan Adhikari](https://github.com/sayanadhikari), UiO, Norway. [@sayanadhikari](https://twitter.com/sayanadhikari)
+- [Rupak Mukherjee](https://github.com/RupakMukherjee), PPPL, USA.
+
+## Installation
+### Prerequisites
+1. [GNU Make](https://www.gnu.org/software/make/)
+2. [python3 or higher](https://www.python.org/download/releases/3.0/)
+3. [git](https://git-scm.com/)
+
+### Procedure
+#### Using PyPI
+```bash
+pip install PPDyn
+```
+*Usage*
+
+Download the input template to your working directory
+```shell
+wget https://raw.githubusercontent.com/sayanadhikari/PPDyn/main/input.ini
+```
+Now, either create a python script in your working directory or use your python console
+```python
+from PPDyn import ppdyn
+from PPDyn.ppdplot import animate
+import time
+
+start = time.time()
+ppdyn(input)
+end = time.time()
+print("Elapsed (after compilation) = %s"%(end - start)+" seconds")
+animate()
+```
+#### Using GNU Make
+First make a clone of the master branch using the following command
+```shell
+git clone https://github.com/sayanadhikari/PPDyn.git
+```
+Then enter inside the *PPDyn* directory
+```shell
+cd PPDyn
+```
+Now complile and built the *PPDyn* code
+```shell
+make all
+```
+*Usage*
+
+Upon successful compilation, run the code using following command
+```shell
+ppdyn -i input.ini
+```
+## Parameter Setup
+Edit the _input.ini_ and run the code again. The basic structure of _input.ini_ is provided below,
+```ini
+;
+; @file		input.ini
+; @brief	PPDyn inputfile.
+;
+scope = default
+
+[simbox]
+Lx  = 10.0    ; System length in X
+Ly  = 10.0    ; System length in Y
+Lz  = 10.0    ; System length in Z
+
+[particles]
+N     = 700     ; Number of particles
+Vxmax = 1.0     ; Maximum velocity in X
+Vymax = 1.0     ; Maximum velocity in Y
+Vzmax = 1.0     ; Maximum velocity in Z
+Temp  = 0.01   ;
+
+[screening]
+k = 1.0
+
+[boundary]
+btype = reflecting ; Type of boundary Options: periodic, reflecting
+
+[time]
+tmax  = 1000.0    ; Final time
+dt    = 0.010   ; time step size
+
+[diagnostics]
+dumpPeriod  = 50    ; Data dump period
+dumpData    = True
+vtkData     = False
+
+[options]
+parallelMode  = True  ;set to false to disable parallel
+```
+## Visualization
+For visualization, user either can use the python scripts available inside ``scripts`` directory or can write their own. After successful run the data will be available under ``data`` directory. Two different data formats are available at present. The complete dataset will available under the name particle.hdf5. For vtk visualization users can use ``.vtu`` files inside ``data/vtkdata``. [Paraview](https://www.paraview.org/) can be used to animate particle dynamics very easily. A sample video can be found [here](https://www.youtube.com/embed/qvQRUX-rSrQ).
+
+
+## Contributing
+We welcome contributions to this project.
+
+1. Fork it.
+2. Create your feature branch (```git checkout -b my-new-feature```).
+3. Commit your changes (```git commit -am 'Add some feature'```).
+4. Push to the branch (```git push origin my-new-feature```).
+5. Create new Pull Request.
+
+## License
+Released under the [MIT license](LICENSE).
+
+
+
+
+%prep
+%autosetup -n PPDyn-1.0.8
+
+%build
+%py3_build
+
+%install
+%py3_install
+install -d -m755 %{buildroot}/%{_pkgdocdir}
+if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
+if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
+if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
+if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
+pushd %{buildroot}
+if [ -d usr/lib ]; then
+	find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/lib64 ]; then
+	find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/bin ]; then
+	find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/sbin ]; then
+	find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+touch doclist.lst
+if [ -d usr/share/man ]; then
+	find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
+fi
+popd
+mv %{buildroot}/filelist.lst .
+mv %{buildroot}/doclist.lst .
+
+%files -n python3-PPDyn -f filelist.lst
+%dir %{python3_sitelib}/*
+
+%files help -f doclist.lst
+%{_docdir}/*
+
+%changelog
+* Thu May 18 2023 Python_Bot <Python_Bot@openeuler.org> - 1.0.8-1
+- Package Spec generated
diff --git a/sources b/sources
new file mode 100644
index 0000000..d547a95
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+46e1fdc874452f41166996c10550b733  PPDyn-1.0.8.tar.gz