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@@ -0,0 +1 @@ +/presto-0.7.1.tar.gz diff --git a/python-presto.spec b/python-presto.spec new file mode 100644 index 0000000..ecfdc9e --- /dev/null +++ b/python-presto.spec @@ -0,0 +1,108 @@ +%global _empty_manifest_terminate_build 0 +Name: python-presto +Version: 0.7.1 +Release: 1 +Summary: A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data. +License: GNU Affero General Public License 3 (AGPL-3) +URL: http://presto.readthedocs.io +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/ca/12/09123b431758827082924054e03277207067853c6af19803f67d1ad1dea9/presto-0.7.1.tar.gz +BuildArch: noarch + + +%description +pRESTO is a toolkit for processing raw reads from high-throughput sequencing of +B cell and T cell repertoires. +Dramatic improvements in high-throughput sequencing technologies now enable +large-scale characterization of lymphocyte repertoires, defined as the +collection of trans-membrane antigen-receptor proteins located on the surface of +B cells and T cells. The REpertoire Sequencing TOolkit (pRESTO) is composed of a +suite of utilities to handle all stages of sequence processing prior to germline +segment assignment. pRESTO is designed to handle either single reads or +paired-end reads. It includes features for quality control, primer masking, +annotation of reads with sequence embedded barcodes, generation of +unique molecular identifier (UMI) consensus sequences, assembly of paired-end +reads and identification of duplicate sequences. Numerous options for sequence +sorting, sampling and conversion operations are also included. + +%package -n python3-presto +Summary: A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data. +Provides: python-presto +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-presto +pRESTO is a toolkit for processing raw reads from high-throughput sequencing of +B cell and T cell repertoires. +Dramatic improvements in high-throughput sequencing technologies now enable +large-scale characterization of lymphocyte repertoires, defined as the +collection of trans-membrane antigen-receptor proteins located on the surface of +B cells and T cells. The REpertoire Sequencing TOolkit (pRESTO) is composed of a +suite of utilities to handle all stages of sequence processing prior to germline +segment assignment. pRESTO is designed to handle either single reads or +paired-end reads. It includes features for quality control, primer masking, +annotation of reads with sequence embedded barcodes, generation of +unique molecular identifier (UMI) consensus sequences, assembly of paired-end +reads and identification of duplicate sequences. Numerous options for sequence +sorting, sampling and conversion operations are also included. + +%package help +Summary: Development documents and examples for presto +Provides: python3-presto-doc +%description help +pRESTO is a toolkit for processing raw reads from high-throughput sequencing of +B cell and T cell repertoires. +Dramatic improvements in high-throughput sequencing technologies now enable +large-scale characterization of lymphocyte repertoires, defined as the +collection of trans-membrane antigen-receptor proteins located on the surface of +B cells and T cells. The REpertoire Sequencing TOolkit (pRESTO) is composed of a +suite of utilities to handle all stages of sequence processing prior to germline +segment assignment. pRESTO is designed to handle either single reads or +paired-end reads. It includes features for quality control, primer masking, +annotation of reads with sequence embedded barcodes, generation of +unique molecular identifier (UMI) consensus sequences, assembly of paired-end +reads and identification of duplicate sequences. Numerous options for sequence +sorting, sampling and conversion operations are also included. + +%prep +%autosetup -n presto-0.7.1 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-presto -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Mon May 29 2023 Python_Bot <Python_Bot@openeuler.org> - 0.7.1-1 +- Package Spec generated @@ -0,0 +1 @@ +53fcdef879ecd4b68c644eee9ad48d6a presto-0.7.1.tar.gz |