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%global _empty_manifest_terminate_build 0
Name: python-probeinterface
Version: 0.2.16
Release: 1
Summary: Python package to handle probe layout, geometry and wiring to device.
License: MIT License
URL: https://pypi.org/project/probeinterface/
Source0: https://mirrors.nju.edu.cn/pypi/web/packages/dd/3d/27dbfa13b8fa5fcbc6ed183f8ae7ff88a2c49f5f1da6214b9b5781558790/probeinterface-0.2.16.tar.gz
BuildArch: noarch
Requires: python3-numpy
Requires: python3-pillow
Requires: python3-sphinx-gallery
Requires: python3-matplotlib
Requires: python3-scipy
Requires: python3-pandas
Requires: python3-pytest
Requires: python3-matplotlib
Requires: python3-scipy
Requires: python3-pandas
%description
# probeinterface
A Python package to handle the layout, geometry, and wiring of silicon probes for extracellular electrophysiology experiments.
Documentation : https://probeinterface.readthedocs.io/
## Goals
Make a lightweight package to handle:
* probe contact geometry (both 2D and 3D layouts)
* probe shape (contour of the probe, shape of channel contact, ...)
* probe wiring to device (the physical layout often doesn't match the channel ordering)
* combining several probes into a device with global geometry + global wiring
* exporting probe geometry data into JSON files
* loading existing probe geometry files (Neuronexus, imec, Cambridge Neurotech...) [Started here](https://gin.g-node.org/spikeinterface/probeinterface_library)
Bonus :
* optional plotting (based on `matplotlib`)
* load/save geometry using common formats (PRB, CSV, NWB, ...)
* handle SI length units correctly um/mm/...
Target users/projet :
* spikeinterface team : integrate this into spikeextractor for channel location
* neo team : handle array_annotations for AnalogSignal
* spikeforest team : use this package for ploting probe activity
* phy team: integrate for probe display
* spyking-circus team : handle probe with this package
* kilosort team : handle probe with this package
* tridesclous team : handle probe with this package
* open ephys team : automatically generate channel map configuration files
Author: Samuel Garcia
%package -n python3-probeinterface
Summary: Python package to handle probe layout, geometry and wiring to device.
Provides: python-probeinterface
BuildRequires: python3-devel
BuildRequires: python3-setuptools
BuildRequires: python3-pip
%description -n python3-probeinterface
# probeinterface
A Python package to handle the layout, geometry, and wiring of silicon probes for extracellular electrophysiology experiments.
Documentation : https://probeinterface.readthedocs.io/
## Goals
Make a lightweight package to handle:
* probe contact geometry (both 2D and 3D layouts)
* probe shape (contour of the probe, shape of channel contact, ...)
* probe wiring to device (the physical layout often doesn't match the channel ordering)
* combining several probes into a device with global geometry + global wiring
* exporting probe geometry data into JSON files
* loading existing probe geometry files (Neuronexus, imec, Cambridge Neurotech...) [Started here](https://gin.g-node.org/spikeinterface/probeinterface_library)
Bonus :
* optional plotting (based on `matplotlib`)
* load/save geometry using common formats (PRB, CSV, NWB, ...)
* handle SI length units correctly um/mm/...
Target users/projet :
* spikeinterface team : integrate this into spikeextractor for channel location
* neo team : handle array_annotations for AnalogSignal
* spikeforest team : use this package for ploting probe activity
* phy team: integrate for probe display
* spyking-circus team : handle probe with this package
* kilosort team : handle probe with this package
* tridesclous team : handle probe with this package
* open ephys team : automatically generate channel map configuration files
Author: Samuel Garcia
%package help
Summary: Development documents and examples for probeinterface
Provides: python3-probeinterface-doc
%description help
# probeinterface
A Python package to handle the layout, geometry, and wiring of silicon probes for extracellular electrophysiology experiments.
Documentation : https://probeinterface.readthedocs.io/
## Goals
Make a lightweight package to handle:
* probe contact geometry (both 2D and 3D layouts)
* probe shape (contour of the probe, shape of channel contact, ...)
* probe wiring to device (the physical layout often doesn't match the channel ordering)
* combining several probes into a device with global geometry + global wiring
* exporting probe geometry data into JSON files
* loading existing probe geometry files (Neuronexus, imec, Cambridge Neurotech...) [Started here](https://gin.g-node.org/spikeinterface/probeinterface_library)
Bonus :
* optional plotting (based on `matplotlib`)
* load/save geometry using common formats (PRB, CSV, NWB, ...)
* handle SI length units correctly um/mm/...
Target users/projet :
* spikeinterface team : integrate this into spikeextractor for channel location
* neo team : handle array_annotations for AnalogSignal
* spikeforest team : use this package for ploting probe activity
* phy team: integrate for probe display
* spyking-circus team : handle probe with this package
* kilosort team : handle probe with this package
* tridesclous team : handle probe with this package
* open ephys team : automatically generate channel map configuration files
Author: Samuel Garcia
%prep
%autosetup -n probeinterface-0.2.16
%build
%py3_build
%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .
%files -n python3-probeinterface -f filelist.lst
%dir %{python3_sitelib}/*
%files help -f doclist.lst
%{_docdir}/*
%changelog
* Sun Apr 23 2023 Python_Bot <Python_Bot@openeuler.org> - 0.2.16-1
- Package Spec generated
|
