From 4a7b2d9b1f931b09d1331263c5292ac358de1ad9 Mon Sep 17 00:00:00 2001 From: CoprDistGit Date: Tue, 20 Jun 2023 08:41:44 +0000 Subject: automatic import of python-pyQuASAR-genotype --- .gitignore | 1 + python-pyquasar-genotype.spec | 126 ++++++++++++++++++++++++++++++++++++++++++ sources | 1 + 3 files changed, 128 insertions(+) create mode 100644 python-pyquasar-genotype.spec create mode 100644 sources diff --git a/.gitignore b/.gitignore index e69de29..87559ae 100644 --- a/.gitignore +++ b/.gitignore @@ -0,0 +1 @@ +/pyQuASAR_genotype-0.1.30.tar.gz diff --git a/python-pyquasar-genotype.spec b/python-pyquasar-genotype.spec new file mode 100644 index 0000000..a88e313 --- /dev/null +++ b/python-pyquasar-genotype.spec @@ -0,0 +1,126 @@ +%global _empty_manifest_terminate_build 0 +Name: python-pyQuASAR-genotype +Version: 0.1.30 +Release: 1 +Summary: Command line tool for genotyping with QuASAR +License: MIT License +URL: https://gitlab.com/aaylward/pyQuASAR_genotype +Source0: https://mirrors.aliyun.com/pypi/web/packages/eb/3c/4758bcd08412cb74b7c37603877d36c6a989266e04a9f9dc7ef97f80a585/pyQuASAR_genotype-0.1.30.tar.gz +BuildArch: noarch + +Requires: python3-pyQuASAR +Requires: python3-seqalign +Requires: python3-wasp-map + +%description +# pyQuASAR_genotype +Command line tool for genotyping with QuASAR. Infer genotypes from ChIP-seq or +ATAC-seq data. + +## Installation + +First, follow the installation steps for [pyQuASAR](https://github.com/anthony-aylward/pyQuASAR) and [wasp_map](https://github.com/anthony-aylward/wasp_map). Then: + +```sh +pip3 install pyQuASAR_genotype +``` +or +```sh +pip3 install --user pyQuASAR_genotype +``` + + + + +%package -n python3-pyQuASAR-genotype +Summary: Command line tool for genotyping with QuASAR +Provides: python-pyQuASAR-genotype +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-pyQuASAR-genotype +# pyQuASAR_genotype +Command line tool for genotyping with QuASAR. Infer genotypes from ChIP-seq or +ATAC-seq data. + +## Installation + +First, follow the installation steps for [pyQuASAR](https://github.com/anthony-aylward/pyQuASAR) and [wasp_map](https://github.com/anthony-aylward/wasp_map). Then: + +```sh +pip3 install pyQuASAR_genotype +``` +or +```sh +pip3 install --user pyQuASAR_genotype +``` + + + + +%package help +Summary: Development documents and examples for pyQuASAR-genotype +Provides: python3-pyQuASAR-genotype-doc +%description help +# pyQuASAR_genotype +Command line tool for genotyping with QuASAR. Infer genotypes from ChIP-seq or +ATAC-seq data. + +## Installation + +First, follow the installation steps for [pyQuASAR](https://github.com/anthony-aylward/pyQuASAR) and [wasp_map](https://github.com/anthony-aylward/wasp_map). Then: + +```sh +pip3 install pyQuASAR_genotype +``` +or +```sh +pip3 install --user pyQuASAR_genotype +``` + + + + +%prep +%autosetup -n pyQuASAR_genotype-0.1.30 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-pyQuASAR-genotype -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Tue Jun 20 2023 Python_Bot - 0.1.30-1 +- Package Spec generated diff --git a/sources b/sources new file mode 100644 index 0000000..0f78c09 --- /dev/null +++ b/sources @@ -0,0 +1 @@ +d06d05e9890863829c2e4ac49d310d05 pyQuASAR_genotype-0.1.30.tar.gz -- cgit v1.2.3