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|
%global _empty_manifest_terminate_build 0
Name: python-pycromanager
Version: 0.27.5
Release: 1
Summary: Open source microscope control using python
License: BSD License
URL: https://github.com/micro-manager/pycro-manager
Source0: https://mirrors.nju.edu.cn/pypi/web/packages/0a/14/13d3974424f5640bec89fcc4a47e285a249b6342b201839964c5dd3f7d79/pycromanager-0.27.5.tar.gz
BuildArch: noarch
Requires: python3-numpy
Requires: python3-dask[array]
Requires: python3-pyzmq
Requires: python3-docstring-inheritance
Requires: python3-ndtiff
Requires: python3-pytest
Requires: python3-wget
Requires: python3-requests
Requires: python3-napari
%description
[](https://pycro-manager.readthedocs.io/en/latest/?badge=latest)
[](https://github.com/micro-manager/pycromanager/raw/master/LICENSE)
[](https://pypi.org/project/pycromanager)
[](https://pypistats.org/packages/pycromanager)
<img src="docs/source/pycromanager_banner.png" width="600">
`pycromanager` is a Python library for customized microscope hardware control and integration with image processing. It works together with [Micro-manager](https://micro-manager.org/) and [Micro-magellan](https://micro-manager.org/wiki/MicroMagellan), or can be used as a standalone backend system for controlling microscope hardware.
Check out to the [journal article](https://rdcu.be/cghwk) or the [documentation](https://pycro-manager.readthedocs.io/en/latest/) for an idea of the capabilities and how to get started.
Have a cool example of something you've done with `pycromanager` or an idea for improvement? Reach out on the issues page.
## Installing pycro-manager
1) Download the lastest version of [micro-manager 2.0](https://micro-manager.org/wiki/Micro-Manager_Nightly_Builds)
2) Install pycro-manager using `pip install pycromanager`
3) Run Micro-Manager, select tools-options, and check the box that says Run server on port 4827 (you only need to do this once)
To verify everything is working, run the following code:
```
from pycromanager import Core
core = Core()
print(core)
```
which will give an output like:
```
<pycromanager.core.mmcorej_CMMCore object at 0x7fe32824a208>
```
### Troubleshooting
Upon creating the Bridge, you may see an error with something like:
```
UserWarning: Version mistmatch between Java ZMQ server and Python client.
Java ZMQ server version: 2.4.0
Python client expected version: 2.5.0
```
In this case case your Micro-manager version Pycro-manager versions are out of sync. Usually, this can be fixed by downloading the latest versions of both. Uprgade to the latest Pycro-manager with:
```
pip install pycromanager --upgrade
```
## Contributing
We welcome community contributions to improve Pycro-manager, including bug fixes, improvements to documentation, examples of different use cases, or internal improvements. Check out the [contributing guide](https://github.com/micro-manager/pycro-manager/blob/master/Contributing.md) to see more about the workflow. Areas where community contributions would be especially helpful can be found on the [Issues](https://github.com/micro-manager/pycro-manager/issues) page with a **Help wanted** label
Information about how to setup a development environment for the Java parts of Pycro-manager can be found [here](https://github.com/micro-manager/pycro-manager/issues/123)
%package -n python3-pycromanager
Summary: Open source microscope control using python
Provides: python-pycromanager
BuildRequires: python3-devel
BuildRequires: python3-setuptools
BuildRequires: python3-pip
%description -n python3-pycromanager
[](https://pycro-manager.readthedocs.io/en/latest/?badge=latest)
[](https://github.com/micro-manager/pycromanager/raw/master/LICENSE)
[](https://pypi.org/project/pycromanager)
[](https://pypistats.org/packages/pycromanager)
<img src="docs/source/pycromanager_banner.png" width="600">
`pycromanager` is a Python library for customized microscope hardware control and integration with image processing. It works together with [Micro-manager](https://micro-manager.org/) and [Micro-magellan](https://micro-manager.org/wiki/MicroMagellan), or can be used as a standalone backend system for controlling microscope hardware.
Check out to the [journal article](https://rdcu.be/cghwk) or the [documentation](https://pycro-manager.readthedocs.io/en/latest/) for an idea of the capabilities and how to get started.
Have a cool example of something you've done with `pycromanager` or an idea for improvement? Reach out on the issues page.
## Installing pycro-manager
1) Download the lastest version of [micro-manager 2.0](https://micro-manager.org/wiki/Micro-Manager_Nightly_Builds)
2) Install pycro-manager using `pip install pycromanager`
3) Run Micro-Manager, select tools-options, and check the box that says Run server on port 4827 (you only need to do this once)
To verify everything is working, run the following code:
```
from pycromanager import Core
core = Core()
print(core)
```
which will give an output like:
```
<pycromanager.core.mmcorej_CMMCore object at 0x7fe32824a208>
```
### Troubleshooting
Upon creating the Bridge, you may see an error with something like:
```
UserWarning: Version mistmatch between Java ZMQ server and Python client.
Java ZMQ server version: 2.4.0
Python client expected version: 2.5.0
```
In this case case your Micro-manager version Pycro-manager versions are out of sync. Usually, this can be fixed by downloading the latest versions of both. Uprgade to the latest Pycro-manager with:
```
pip install pycromanager --upgrade
```
## Contributing
We welcome community contributions to improve Pycro-manager, including bug fixes, improvements to documentation, examples of different use cases, or internal improvements. Check out the [contributing guide](https://github.com/micro-manager/pycro-manager/blob/master/Contributing.md) to see more about the workflow. Areas where community contributions would be especially helpful can be found on the [Issues](https://github.com/micro-manager/pycro-manager/issues) page with a **Help wanted** label
Information about how to setup a development environment for the Java parts of Pycro-manager can be found [here](https://github.com/micro-manager/pycro-manager/issues/123)
%package help
Summary: Development documents and examples for pycromanager
Provides: python3-pycromanager-doc
%description help
[](https://pycro-manager.readthedocs.io/en/latest/?badge=latest)
[](https://github.com/micro-manager/pycromanager/raw/master/LICENSE)
[](https://pypi.org/project/pycromanager)
[](https://pypistats.org/packages/pycromanager)
<img src="docs/source/pycromanager_banner.png" width="600">
`pycromanager` is a Python library for customized microscope hardware control and integration with image processing. It works together with [Micro-manager](https://micro-manager.org/) and [Micro-magellan](https://micro-manager.org/wiki/MicroMagellan), or can be used as a standalone backend system for controlling microscope hardware.
Check out to the [journal article](https://rdcu.be/cghwk) or the [documentation](https://pycro-manager.readthedocs.io/en/latest/) for an idea of the capabilities and how to get started.
Have a cool example of something you've done with `pycromanager` or an idea for improvement? Reach out on the issues page.
## Installing pycro-manager
1) Download the lastest version of [micro-manager 2.0](https://micro-manager.org/wiki/Micro-Manager_Nightly_Builds)
2) Install pycro-manager using `pip install pycromanager`
3) Run Micro-Manager, select tools-options, and check the box that says Run server on port 4827 (you only need to do this once)
To verify everything is working, run the following code:
```
from pycromanager import Core
core = Core()
print(core)
```
which will give an output like:
```
<pycromanager.core.mmcorej_CMMCore object at 0x7fe32824a208>
```
### Troubleshooting
Upon creating the Bridge, you may see an error with something like:
```
UserWarning: Version mistmatch between Java ZMQ server and Python client.
Java ZMQ server version: 2.4.0
Python client expected version: 2.5.0
```
In this case case your Micro-manager version Pycro-manager versions are out of sync. Usually, this can be fixed by downloading the latest versions of both. Uprgade to the latest Pycro-manager with:
```
pip install pycromanager --upgrade
```
## Contributing
We welcome community contributions to improve Pycro-manager, including bug fixes, improvements to documentation, examples of different use cases, or internal improvements. Check out the [contributing guide](https://github.com/micro-manager/pycro-manager/blob/master/Contributing.md) to see more about the workflow. Areas where community contributions would be especially helpful can be found on the [Issues](https://github.com/micro-manager/pycro-manager/issues) page with a **Help wanted** label
Information about how to setup a development environment for the Java parts of Pycro-manager can be found [here](https://github.com/micro-manager/pycro-manager/issues/123)
%prep
%autosetup -n pycromanager-0.27.5
%build
%py3_build
%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .
%files -n python3-pycromanager -f filelist.lst
%dir %{python3_sitelib}/*
%files help -f doclist.lst
%{_docdir}/*
%changelog
* Wed May 10 2023 Python_Bot <Python_Bot@openeuler.org> - 0.27.5-1
- Package Spec generated
|
