automatic import of python-pysam

3 files changed, 129 insertions, 0 deletions

diff --git a/.gitignore b/.gitignore
index e69de29..0c89d3d 100644
--- a/.gitignore
+++ b/.gitignore
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+/pysam-0.21.0.tar.gz
diff --git a/python-pysam.spec b/python-pysam.spec
new file mode 100644
index 0000000..111b679
--- /dev/null
+++ b/python-pysam.spec
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+%global _empty_manifest_terminate_build 0
+Name:		python-pysam
+Version:	0.21.0
+Release:	1
+Summary:	pysam - a python module for reading, manipulating and writing genomic data sets.
+License:	MIT License
+URL:		https://github.com/pysam-developers/pysam
+Source0:	https://mirrors.nju.edu.cn/pypi/web/packages/16/1c/a4999d93d6fd7791349f0822e1674b39971fe30d3b99638209ae6de3dfc7/pysam-0.21.0.tar.gz
+BuildArch:	noarch
+
+Requires:	python3-cython
+
+%description
+pysam - a python module for reading, manipulating and writing
+genomic data sets.
+
+pysam is a lightweight wrapper of the htslib C-API and provides
+facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ
+files as well as access to the command line functionality of the
+samtools and bcftools packages. The module supports compression and
+random access through indexing.
+
+This module provides a low-level wrapper around the htslib C-API as
+using cython and a high-level API for convenient access to the data
+within standard genomic file formats.
+
+See:
+http://www.htslib.org
+https://github.com/pysam-developers/pysam
+http://pysam.readthedocs.org/en/stable
+
+
+
+%package -n python3-pysam
+Summary:	pysam - a python module for reading, manipulating and writing genomic data sets.
+Provides:	python-pysam
+BuildRequires:	python3-devel
+BuildRequires:	python3-setuptools
+BuildRequires:	python3-pip
+%description -n python3-pysam
+pysam - a python module for reading, manipulating and writing
+genomic data sets.
+
+pysam is a lightweight wrapper of the htslib C-API and provides
+facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ
+files as well as access to the command line functionality of the
+samtools and bcftools packages. The module supports compression and
+random access through indexing.
+
+This module provides a low-level wrapper around the htslib C-API as
+using cython and a high-level API for convenient access to the data
+within standard genomic file formats.
+
+See:
+http://www.htslib.org
+https://github.com/pysam-developers/pysam
+http://pysam.readthedocs.org/en/stable
+
+
+
+%package help
+Summary:	Development documents and examples for pysam
+Provides:	python3-pysam-doc
+%description help
+pysam - a python module for reading, manipulating and writing
+genomic data sets.
+
+pysam is a lightweight wrapper of the htslib C-API and provides
+facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ
+files as well as access to the command line functionality of the
+samtools and bcftools packages. The module supports compression and
+random access through indexing.
+
+This module provides a low-level wrapper around the htslib C-API as
+using cython and a high-level API for convenient access to the data
+within standard genomic file formats.
+
+See:
+http://www.htslib.org
+https://github.com/pysam-developers/pysam
+http://pysam.readthedocs.org/en/stable
+
+
+
+%prep
+%autosetup -n pysam-0.21.0
+
+%build
+%py3_build
+
+%install
+%py3_install
+install -d -m755 %{buildroot}/%{_pkgdocdir}
+if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
+if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
+if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
+if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
+pushd %{buildroot}
+if [ -d usr/lib ]; then
+	find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/lib64 ]; then
+	find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/bin ]; then
+	find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/sbin ]; then
+	find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+touch doclist.lst
+if [ -d usr/share/man ]; then
+	find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
+fi
+popd
+mv %{buildroot}/filelist.lst .
+mv %{buildroot}/doclist.lst .
+
+%files -n python3-pysam -f filelist.lst
+%dir %{python3_sitelib}/*
+
+%files help -f doclist.lst
+%{_docdir}/*
+
+%changelog
+* Mon Apr 10 2023 Python_Bot <Python_Bot@openeuler.org> - 0.21.0-1
+- Package Spec generated
diff --git a/sources b/sources
new file mode 100644
index 0000000..8ac6c50
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+dca7fb36d2cf69ef887fe05ddd726998  pysam-0.21.0.tar.gz