diff options
| author | CoprDistGit <infra@openeuler.org> | 2023-04-10 15:51:19 +0000 |
|---|---|---|
| committer | CoprDistGit <infra@openeuler.org> | 2023-04-10 15:51:19 +0000 |
| commit | 3272eb4035b8433b39117e75c50fb1cc73cbfe7d (patch) | |
| tree | c4219080d50f0631aea7b6a14c9f831914ba72bc /python-pysam.spec | |
| parent | cb6362aaabcca322aaeadffad31fc45126e40fb8 (diff) | |
automatic import of python-pysam
Diffstat (limited to 'python-pysam.spec')
| -rw-r--r-- | python-pysam.spec | 127 |
1 files changed, 127 insertions, 0 deletions
diff --git a/python-pysam.spec b/python-pysam.spec new file mode 100644 index 0000000..111b679 --- /dev/null +++ b/python-pysam.spec @@ -0,0 +1,127 @@ +%global _empty_manifest_terminate_build 0 +Name: python-pysam +Version: 0.21.0 +Release: 1 +Summary: pysam - a python module for reading, manipulating and writing genomic data sets. +License: MIT License +URL: https://github.com/pysam-developers/pysam +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/16/1c/a4999d93d6fd7791349f0822e1674b39971fe30d3b99638209ae6de3dfc7/pysam-0.21.0.tar.gz +BuildArch: noarch + +Requires: python3-cython + +%description +pysam - a python module for reading, manipulating and writing +genomic data sets. + +pysam is a lightweight wrapper of the htslib C-API and provides +facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ +files as well as access to the command line functionality of the +samtools and bcftools packages. The module supports compression and +random access through indexing. + +This module provides a low-level wrapper around the htslib C-API as +using cython and a high-level API for convenient access to the data +within standard genomic file formats. + +See: +http://www.htslib.org +https://github.com/pysam-developers/pysam +http://pysam.readthedocs.org/en/stable + + + +%package -n python3-pysam +Summary: pysam - a python module for reading, manipulating and writing genomic data sets. +Provides: python-pysam +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-pysam +pysam - a python module for reading, manipulating and writing +genomic data sets. + +pysam is a lightweight wrapper of the htslib C-API and provides +facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ +files as well as access to the command line functionality of the +samtools and bcftools packages. The module supports compression and +random access through indexing. + +This module provides a low-level wrapper around the htslib C-API as +using cython and a high-level API for convenient access to the data +within standard genomic file formats. + +See: +http://www.htslib.org +https://github.com/pysam-developers/pysam +http://pysam.readthedocs.org/en/stable + + + +%package help +Summary: Development documents and examples for pysam +Provides: python3-pysam-doc +%description help +pysam - a python module for reading, manipulating and writing +genomic data sets. + +pysam is a lightweight wrapper of the htslib C-API and provides +facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ +files as well as access to the command line functionality of the +samtools and bcftools packages. The module supports compression and +random access through indexing. + +This module provides a low-level wrapper around the htslib C-API as +using cython and a high-level API for convenient access to the data +within standard genomic file formats. + +See: +http://www.htslib.org +https://github.com/pysam-developers/pysam +http://pysam.readthedocs.org/en/stable + + + +%prep +%autosetup -n pysam-0.21.0 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-pysam -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Mon Apr 10 2023 Python_Bot <Python_Bot@openeuler.org> - 0.21.0-1 +- Package Spec generated |
