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| author | CoprDistGit <infra@openeuler.org> | 2023-05-18 03:36:58 +0000 |
|---|---|---|
| committer | CoprDistGit <infra@openeuler.org> | 2023-05-18 03:36:58 +0000 |
| commit | cf714a43ec60ec3ba8df47fcd1079463db25191c (patch) | |
| tree | 83c24cc4eaeacd1f819cddf0d091876867886529 | |
| parent | 28fff4a1f4a179e6bf78c81b53214958eccd452a (diff) | |
automatic import of python-pyxtal
| -rw-r--r-- | .gitignore | 1 | ||||
| -rw-r--r-- | python-pyxtal.spec | 340 | ||||
| -rw-r--r-- | sources | 1 |
3 files changed, 342 insertions, 0 deletions
@@ -0,0 +1 @@ +/pyxtal-0.5.5.tar.gz diff --git a/python-pyxtal.spec b/python-pyxtal.spec new file mode 100644 index 0000000..d592d8c --- /dev/null +++ b/python-pyxtal.spec @@ -0,0 +1,340 @@ +%global _empty_manifest_terminate_build 0 +Name: python-pyxtal +Version: 0.5.5 +Release: 1 +Summary: Python code for generation of crystal structures based on symmetry constraints. +License: MIT +URL: https://github.com/qzhu2017/PyXtal +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/b9/0f/c22a5925963b88bbb2ea7f7969e5446ae7482442ad967e99adad7d45fa26/pyxtal-0.5.5.tar.gz +BuildArch: noarch + +Requires: python3-spglib +Requires: python3-pymatgen +Requires: python3-pandas +Requires: python3-networkx +Requires: python3-py3Dmol +Requires: python3-ase +Requires: python3-numba +Requires: python3-scipy +Requires: python3-importlib-metadata +Requires: python3-pyshtools + +%description +<img src="https://raw.githubusercontent.com/qzhu2017/PyXtal/master/images/512px_type1.png" alt="PyXtal" width="300"/> + +[](https://pyxtal.readthedocs.io/en/latest/?badge=latest) +[](https://github.com/qzhu2017/PyXtal/actions) +[](https://pypi.org/project/pyxtal/) +[](https://pypi.org/project/pyxtal/) +[](https://pepy.tech/project/pyxtal) +[](https://zenodo.org/badge/latestdoi/128165891) +[](https://gitter.im/PyXtal/community?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge) +<img align="right" width="450" src="https://raw.githubusercontent.com/qzhu2017/PyXtal/master/images/water.gif"> + + +## Table of content +- [Introduction](#introduction) +- [Quick Start](#quick-start) +- [Current Features](#current-features) +- [Installation](#installation) +- [Citation](#citation) +- [How to contribute?](#how-to-contribute) + + +## Introduction + +PyXtal is an open source Python package which was initiated by [Qiang Zhu](http://qzhu2017.github.io) and Scott Fredericks at department of Physics and Astronomy, University of Nevada Las Vegas. The goal of PyXtal is to develop a fundamental library to allow one to design the material structure with a certain symmetry constraint. These structures can exported to various structural formats for further study. See the [documentation](https://pyxtal.readthedocs.io/en/latest/) for more information. + +To contribute to this project, please check [How to contribute?](#how-to-contribute). + +## Quick Start + +- [Atomic crystal](https://nbviewer.jupyter.org/github/qzhu2017/PyXtal/blob/master/examples/tutorials_notebook/01_atomic_crystals.ipynb) +- [Molecular crystal](https://nbviewer.jupyter.org/github/qzhu2017/PyXtal/blob/master/examples/tutorials_notebook/02_molecular_crystals.ipynb) +- [XRD](https://nbviewer.jupyter.org/github/qzhu2017/PyXtal/blob/master/examples/tutorials_notebook/03_pxrd.ipynb) +- [Molecular Packing](https://nbviewer.org/github/qzhu2017/PyXtal/blob/master/examples/tutorials_notebook/05-crystal-packing.ipynb) + +## Current Features + +- Generation of atomic structures for a given symmetry and stoichiometry (0-3D) +- Generation of molecular crystals (1-3D) with the support of special Wyckoff positions. +- Structure manipulation via subgroup/supergroup symmetry relation +- Geometry optimization from built-in and external optimization methods. +- Internal support of ``cif`` file and many other formats via ``pymatgen`` or ``ASE``. +- Easy access to symmetry information (e.g., Wyckoff, site symmetry and international symbols). +- X-ray diffraction analysis and [its online application](https://vxrd.physics.unlv.edu) + +## Installation + +To install the code, one just needs to do + +```sh +pip install pyxtal +``` + +or + +```sh +pip install --upgrade git+https://github.com/qzhu2017/PyXtal.git@master +``` + +## Citation + +Fredericks S, Parrish K, Sayre D, Zhu Q\*(2020) +[PyXtal: a Python Library for Crystal Structure Generation and Symmetry Analysis](https://www.sciencedirect.com/science/article/pii/S0010465520304057). +\[[arXiv link](https://arxiv.org/pdf/1911.11123.pdf)\] + +```bib +@article{pyxtal, +title = "PyXtal: A Python library for crystal structure generation and symmetry analysis", +journal = "Computer Physics Communications", +volume = "261", +pages = "107810", +year = "2021", +issn = "0010-4655", +doi = "https://doi.org/10.1016/j.cpc.2020.107810", +url = "http://www.sciencedirect.com/science/article/pii/S0010465520304057", +author = "Scott Fredericks and Kevin Parrish and Dean Sayre and Qiang Zhu", +} +``` + +## How to contribute? + +This is an open-source project. Its growth depends on the community. To contribute to PyXtal, you don't necessarily have to write the code. Any contributions from the following list will be helpful. + +- [](https://github.com/qzhu2017/pyxtal/stargazers) + the PyXtal project and recommend it to your colleagues/friends +- Open an [](https://GitHub.com/qzhu2017/pyxtal/issues/) to report the bug or address your wishlist or improve our documentation +- [](https://github.com/qzhu2017/PyXtal/network/members) the repository and send us the pull request + + +%package -n python3-pyxtal +Summary: Python code for generation of crystal structures based on symmetry constraints. +Provides: python-pyxtal +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-pyxtal +<img src="https://raw.githubusercontent.com/qzhu2017/PyXtal/master/images/512px_type1.png" alt="PyXtal" width="300"/> + +[](https://pyxtal.readthedocs.io/en/latest/?badge=latest) +[](https://github.com/qzhu2017/PyXtal/actions) +[](https://pypi.org/project/pyxtal/) +[](https://pypi.org/project/pyxtal/) +[](https://pepy.tech/project/pyxtal) +[](https://zenodo.org/badge/latestdoi/128165891) +[](https://gitter.im/PyXtal/community?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge) +<img align="right" width="450" src="https://raw.githubusercontent.com/qzhu2017/PyXtal/master/images/water.gif"> + + +## Table of content +- [Introduction](#introduction) +- [Quick Start](#quick-start) +- [Current Features](#current-features) +- [Installation](#installation) +- [Citation](#citation) +- [How to contribute?](#how-to-contribute) + + +## Introduction + +PyXtal is an open source Python package which was initiated by [Qiang Zhu](http://qzhu2017.github.io) and Scott Fredericks at department of Physics and Astronomy, University of Nevada Las Vegas. The goal of PyXtal is to develop a fundamental library to allow one to design the material structure with a certain symmetry constraint. These structures can exported to various structural formats for further study. See the [documentation](https://pyxtal.readthedocs.io/en/latest/) for more information. + +To contribute to this project, please check [How to contribute?](#how-to-contribute). + +## Quick Start + +- [Atomic crystal](https://nbviewer.jupyter.org/github/qzhu2017/PyXtal/blob/master/examples/tutorials_notebook/01_atomic_crystals.ipynb) +- [Molecular crystal](https://nbviewer.jupyter.org/github/qzhu2017/PyXtal/blob/master/examples/tutorials_notebook/02_molecular_crystals.ipynb) +- [XRD](https://nbviewer.jupyter.org/github/qzhu2017/PyXtal/blob/master/examples/tutorials_notebook/03_pxrd.ipynb) +- [Molecular Packing](https://nbviewer.org/github/qzhu2017/PyXtal/blob/master/examples/tutorials_notebook/05-crystal-packing.ipynb) + +## Current Features + +- Generation of atomic structures for a given symmetry and stoichiometry (0-3D) +- Generation of molecular crystals (1-3D) with the support of special Wyckoff positions. +- Structure manipulation via subgroup/supergroup symmetry relation +- Geometry optimization from built-in and external optimization methods. +- Internal support of ``cif`` file and many other formats via ``pymatgen`` or ``ASE``. +- Easy access to symmetry information (e.g., Wyckoff, site symmetry and international symbols). +- X-ray diffraction analysis and [its online application](https://vxrd.physics.unlv.edu) + +## Installation + +To install the code, one just needs to do + +```sh +pip install pyxtal +``` + +or + +```sh +pip install --upgrade git+https://github.com/qzhu2017/PyXtal.git@master +``` + +## Citation + +Fredericks S, Parrish K, Sayre D, Zhu Q\*(2020) +[PyXtal: a Python Library for Crystal Structure Generation and Symmetry Analysis](https://www.sciencedirect.com/science/article/pii/S0010465520304057). +\[[arXiv link](https://arxiv.org/pdf/1911.11123.pdf)\] + +```bib +@article{pyxtal, +title = "PyXtal: A Python library for crystal structure generation and symmetry analysis", +journal = "Computer Physics Communications", +volume = "261", +pages = "107810", +year = "2021", +issn = "0010-4655", +doi = "https://doi.org/10.1016/j.cpc.2020.107810", +url = "http://www.sciencedirect.com/science/article/pii/S0010465520304057", +author = "Scott Fredericks and Kevin Parrish and Dean Sayre and Qiang Zhu", +} +``` + +## How to contribute? + +This is an open-source project. Its growth depends on the community. To contribute to PyXtal, you don't necessarily have to write the code. Any contributions from the following list will be helpful. + +- [](https://github.com/qzhu2017/pyxtal/stargazers) + the PyXtal project and recommend it to your colleagues/friends +- Open an [](https://GitHub.com/qzhu2017/pyxtal/issues/) to report the bug or address your wishlist or improve our documentation +- [](https://github.com/qzhu2017/PyXtal/network/members) the repository and send us the pull request + + +%package help +Summary: Development documents and examples for pyxtal +Provides: python3-pyxtal-doc +%description help +<img src="https://raw.githubusercontent.com/qzhu2017/PyXtal/master/images/512px_type1.png" alt="PyXtal" width="300"/> + +[](https://pyxtal.readthedocs.io/en/latest/?badge=latest) +[](https://github.com/qzhu2017/PyXtal/actions) +[](https://pypi.org/project/pyxtal/) +[](https://pypi.org/project/pyxtal/) +[](https://pepy.tech/project/pyxtal) +[](https://zenodo.org/badge/latestdoi/128165891) +[](https://gitter.im/PyXtal/community?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge) +<img align="right" width="450" src="https://raw.githubusercontent.com/qzhu2017/PyXtal/master/images/water.gif"> + + +## Table of content +- [Introduction](#introduction) +- [Quick Start](#quick-start) +- [Current Features](#current-features) +- [Installation](#installation) +- [Citation](#citation) +- [How to contribute?](#how-to-contribute) + + +## Introduction + +PyXtal is an open source Python package which was initiated by [Qiang Zhu](http://qzhu2017.github.io) and Scott Fredericks at department of Physics and Astronomy, University of Nevada Las Vegas. The goal of PyXtal is to develop a fundamental library to allow one to design the material structure with a certain symmetry constraint. These structures can exported to various structural formats for further study. See the [documentation](https://pyxtal.readthedocs.io/en/latest/) for more information. + +To contribute to this project, please check [How to contribute?](#how-to-contribute). + +## Quick Start + +- [Atomic crystal](https://nbviewer.jupyter.org/github/qzhu2017/PyXtal/blob/master/examples/tutorials_notebook/01_atomic_crystals.ipynb) +- [Molecular crystal](https://nbviewer.jupyter.org/github/qzhu2017/PyXtal/blob/master/examples/tutorials_notebook/02_molecular_crystals.ipynb) +- [XRD](https://nbviewer.jupyter.org/github/qzhu2017/PyXtal/blob/master/examples/tutorials_notebook/03_pxrd.ipynb) +- [Molecular Packing](https://nbviewer.org/github/qzhu2017/PyXtal/blob/master/examples/tutorials_notebook/05-crystal-packing.ipynb) + +## Current Features + +- Generation of atomic structures for a given symmetry and stoichiometry (0-3D) +- Generation of molecular crystals (1-3D) with the support of special Wyckoff positions. +- Structure manipulation via subgroup/supergroup symmetry relation +- Geometry optimization from built-in and external optimization methods. +- Internal support of ``cif`` file and many other formats via ``pymatgen`` or ``ASE``. +- Easy access to symmetry information (e.g., Wyckoff, site symmetry and international symbols). +- X-ray diffraction analysis and [its online application](https://vxrd.physics.unlv.edu) + +## Installation + +To install the code, one just needs to do + +```sh +pip install pyxtal +``` + +or + +```sh +pip install --upgrade git+https://github.com/qzhu2017/PyXtal.git@master +``` + +## Citation + +Fredericks S, Parrish K, Sayre D, Zhu Q\*(2020) +[PyXtal: a Python Library for Crystal Structure Generation and Symmetry Analysis](https://www.sciencedirect.com/science/article/pii/S0010465520304057). +\[[arXiv link](https://arxiv.org/pdf/1911.11123.pdf)\] + +```bib +@article{pyxtal, +title = "PyXtal: A Python library for crystal structure generation and symmetry analysis", +journal = "Computer Physics Communications", +volume = "261", +pages = "107810", +year = "2021", +issn = "0010-4655", +doi = "https://doi.org/10.1016/j.cpc.2020.107810", +url = "http://www.sciencedirect.com/science/article/pii/S0010465520304057", +author = "Scott Fredericks and Kevin Parrish and Dean Sayre and Qiang Zhu", +} +``` + +## How to contribute? + +This is an open-source project. Its growth depends on the community. To contribute to PyXtal, you don't necessarily have to write the code. Any contributions from the following list will be helpful. + +- [](https://github.com/qzhu2017/pyxtal/stargazers) + the PyXtal project and recommend it to your colleagues/friends +- Open an [](https://GitHub.com/qzhu2017/pyxtal/issues/) to report the bug or address your wishlist or improve our documentation +- [](https://github.com/qzhu2017/PyXtal/network/members) the repository and send us the pull request + + +%prep +%autosetup -n pyxtal-0.5.5 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-pyxtal -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Thu May 18 2023 Python_Bot <Python_Bot@openeuler.org> - 0.5.5-1 +- Package Spec generated @@ -0,0 +1 @@ +dc0e1374cc3b406c92add7c4bf800f11 pyxtal-0.5.5.tar.gz |
