From 100e0b0dd373c82d45e0f4f4c01f5938d76c1524 Mon Sep 17 00:00:00 2001 From: CoprDistGit Date: Mon, 29 May 2023 13:01:01 +0000 Subject: automatic import of python-reademption --- .gitignore | 1 + python-reademption.spec | 114 ++++++++++++++++++++++++++++++++++++++++++++++++ sources | 1 + 3 files changed, 116 insertions(+) create mode 100644 python-reademption.spec create mode 100644 sources diff --git a/.gitignore b/.gitignore index e69de29..a489f1c 100644 --- a/.gitignore +++ b/.gitignore @@ -0,0 +1 @@ +/READemption-2.0.3.tar.gz diff --git a/python-reademption.spec b/python-reademption.spec new file mode 100644 index 0000000..a583757 --- /dev/null +++ b/python-reademption.spec @@ -0,0 +1,114 @@ +%global _empty_manifest_terminate_build 0 +Name: python-READemption +Version: 2.0.3 +Release: 1 +Summary: A RNA-Seq Analysis Pipeline +License: MIT License +URL: https://pypi.org/project/READemption/ +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/e5/84/1705e6e2e85a47989ea1751dddca5c571e416f5a4fb8eb7d4bd0dd9860b3/READemption-2.0.3.tar.gz +BuildArch: noarch + +Requires: python3-biopython +Requires: python3-matplotlib +Requires: python3-pandas +Requires: python3-pysam +Requires: python3-seaborn +Requires: python3-sphinx-argparse + +%description +READemption is a pipeline for the computational evaluation of RNA-Seq +data. It was originally developed to process dRNA-Seq reads (as +introduced by Sharma et al., Nature, 2010) originating from bacterial +samples. Meanwhile is has been extended to process data generated in +different experimental setups and from all domains of life. The +functions which are accessible via a command-line interface cover read +processing and aligning, coverage calculation, gene expression +quantification, differential gene expression analysis as well as +visualization. In order to set up and perform analyses quickly +READemption follows the principal of “convention over configuration”: +Once the input files are copied/linked into defined folders no further +parameters have to be given. Still, READemption’s behavior can be +adapted to specific needs of the user by parameters. + +%package -n python3-READemption +Summary: A RNA-Seq Analysis Pipeline +Provides: python-READemption +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-READemption +READemption is a pipeline for the computational evaluation of RNA-Seq +data. It was originally developed to process dRNA-Seq reads (as +introduced by Sharma et al., Nature, 2010) originating from bacterial +samples. Meanwhile is has been extended to process data generated in +different experimental setups and from all domains of life. The +functions which are accessible via a command-line interface cover read +processing and aligning, coverage calculation, gene expression +quantification, differential gene expression analysis as well as +visualization. In order to set up and perform analyses quickly +READemption follows the principal of “convention over configuration”: +Once the input files are copied/linked into defined folders no further +parameters have to be given. Still, READemption’s behavior can be +adapted to specific needs of the user by parameters. + +%package help +Summary: Development documents and examples for READemption +Provides: python3-READemption-doc +%description help +READemption is a pipeline for the computational evaluation of RNA-Seq +data. It was originally developed to process dRNA-Seq reads (as +introduced by Sharma et al., Nature, 2010) originating from bacterial +samples. Meanwhile is has been extended to process data generated in +different experimental setups and from all domains of life. The +functions which are accessible via a command-line interface cover read +processing and aligning, coverage calculation, gene expression +quantification, differential gene expression analysis as well as +visualization. In order to set up and perform analyses quickly +READemption follows the principal of “convention over configuration”: +Once the input files are copied/linked into defined folders no further +parameters have to be given. Still, READemption’s behavior can be +adapted to specific needs of the user by parameters. + +%prep +%autosetup -n READemption-2.0.3 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-READemption -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Mon May 29 2023 Python_Bot - 2.0.3-1 +- Package Spec generated diff --git a/sources b/sources new file mode 100644 index 0000000..99c9de0 --- /dev/null +++ b/sources @@ -0,0 +1 @@ +435e6624974b1928fb25ba1ec2954873 READemption-2.0.3.tar.gz -- cgit v1.2.3