From 3b23edc9c111e982d749f7454d3f1503dd037897 Mon Sep 17 00:00:00 2001 From: CoprDistGit Date: Tue, 11 Apr 2023 05:46:56 +0000 Subject: automatic import of python-rust --- .gitignore | 1 + python-rust.spec | 103 +++++++++++++++++++++++++++++++++++++++++++++++++++++++ sources | 1 + 3 files changed, 105 insertions(+) create mode 100644 python-rust.spec create mode 100644 sources diff --git a/.gitignore b/.gitignore index e69de29..17f2a8c 100644 --- a/.gitignore +++ b/.gitignore @@ -0,0 +1 @@ +/RUST-0.1.1.tar.gz diff --git a/python-rust.spec b/python-rust.spec new file mode 100644 index 0000000..5ab3255 --- /dev/null +++ b/python-rust.spec @@ -0,0 +1,103 @@ +%global _empty_manifest_terminate_build 0 +Name: python-RUST +Version: 0.1.1 +Release: 1 +Summary: Ribo-Seq Unit Step Transformation +License: GPL +URL: http://ribogalaxy.ucc.ie +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/c3/ff/1ffe5c38505fd5226e344aaf91fd43dc38648ccf79ae7096ea0fa4f7f815/RUST-0.1.1.tar.gz +BuildArch: noarch + +Requires: python3-biopython +Requires: python3-matplotlib +Requires: python3-mock +Requires: python3-pysam + +%description +This tool is designed for ribo-seq data and produces a metafootprint profile +that reveals the influence of mRNA features such as codons/amino acids on +the relative read density in the sample across the entire ribosome and nascent +peptide region. The Kullback-Leibler divergence across these sites is also provided. +An online version is available on `RiboGalaxy `_. +Author: Patrick O'Connor +**Citation** +Surveying the relative impact of mRNA features on local ribosome profiling read density in 28 datasets. +Patrick O'Connor, Dmitry Andreev, Pavel Baranov +bioRxiv doi: http://dx.doi.org/10.1101/018762 + +%package -n python3-RUST +Summary: Ribo-Seq Unit Step Transformation +Provides: python-RUST +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-RUST +This tool is designed for ribo-seq data and produces a metafootprint profile +that reveals the influence of mRNA features such as codons/amino acids on +the relative read density in the sample across the entire ribosome and nascent +peptide region. The Kullback-Leibler divergence across these sites is also provided. +An online version is available on `RiboGalaxy `_. +Author: Patrick O'Connor +**Citation** +Surveying the relative impact of mRNA features on local ribosome profiling read density in 28 datasets. +Patrick O'Connor, Dmitry Andreev, Pavel Baranov +bioRxiv doi: http://dx.doi.org/10.1101/018762 + +%package help +Summary: Development documents and examples for RUST +Provides: python3-RUST-doc +%description help +This tool is designed for ribo-seq data and produces a metafootprint profile +that reveals the influence of mRNA features such as codons/amino acids on +the relative read density in the sample across the entire ribosome and nascent +peptide region. The Kullback-Leibler divergence across these sites is also provided. +An online version is available on `RiboGalaxy `_. +Author: Patrick O'Connor +**Citation** +Surveying the relative impact of mRNA features on local ribosome profiling read density in 28 datasets. +Patrick O'Connor, Dmitry Andreev, Pavel Baranov +bioRxiv doi: http://dx.doi.org/10.1101/018762 + +%prep +%autosetup -n RUST-0.1.1 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-RUST -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Tue Apr 11 2023 Python_Bot - 0.1.1-1 +- Package Spec generated diff --git a/sources b/sources new file mode 100644 index 0000000..17885d4 --- /dev/null +++ b/sources @@ -0,0 +1 @@ +6a78c832851b67c4be2aa5df76122113 RUST-0.1.1.tar.gz -- cgit v1.2.3