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author | CoprDistGit <infra@openeuler.org> | 2023-05-05 08:26:09 +0000 |
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committer | CoprDistGit <infra@openeuler.org> | 2023-05-05 08:26:09 +0000 |
commit | 00765ebc8f23f75393d34ad825d900b5ea058e58 (patch) | |
tree | e87829a1cd7de08874388bb0081896074285e8ed | |
parent | 732fa715bff70e57ea06e66aa2736b89ab035342 (diff) |
automatic import of python-scimapopeneuler20.03
-rw-r--r-- | .gitignore | 1 | ||||
-rw-r--r-- | python-scimap.spec | 255 | ||||
-rw-r--r-- | sources | 1 |
3 files changed, 257 insertions, 0 deletions
@@ -0,0 +1 @@ +/scimap-1.1.0.tar.gz diff --git a/python-scimap.spec b/python-scimap.spec new file mode 100644 index 0000000..666de3f --- /dev/null +++ b/python-scimap.spec @@ -0,0 +1,255 @@ +%global _empty_manifest_terminate_build 0 +Name: python-scimap +Version: 1.1.0 +Release: 1 +Summary: Spatial Single-Cell Analysis Toolkit +License: MIT +URL: https://pypi.org/project/scimap/ +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/dc/df/9fbc541d80ff9ced659aa755c8bc0107a29bb1e4d20f97928b3691bc64aa/scimap-1.1.0.tar.gz +BuildArch: noarch + +Requires: python3-pytest +Requires: python3-anndata +Requires: python3-pandas +Requires: python3-scipy +Requires: python3-seaborn +Requires: python3-tifffile +Requires: python3-numpy +Requires: python3-pytest-xvfb +Requires: python3-matplotlib +Requires: python3-PhenoGraph +Requires: python3-scanpy +Requires: python3-mkdocs +Requires: python3-plotly +Requires: python3-TiffFile +Requires: python3-dask[array] +Requires: python3-zarr +Requires: python3-napari +Requires: python3-numba +Requires: python3-shapely +Requires: python3-gensim +Requires: python3-mkdocs-material +Requires: python3-napari-ome-zarr +Requires: python3-llvmlite +Requires: python3-combat + +%description +# Single-Cell Image Analysis Package +<br> + +[](https://github.com/ajitjohnson/scimap/actions/workflows/build-unix-mac-win.yml) +[](https://github.com/ajitjohnson/scimap/actions/workflows/docs.yml) +[](https://pepy.tech/project/scimap) +[](https://pypi.org/project/scimap) +[](https://pypi.org/project/scimap) +[](https://gitter.im/scimap_io/community) +[](https://zenodo.org/badge/latestdoi/271099296) + +<br> + +<img src="./docs/assets/scimap_logo.jpg" style="max-width:700px;width:100%" > + +<br> + +Scimap is a scalable toolkit for analyzing spatial molecular data. The underlying framework is generalizable to spatial datasets mapped to XY coordinates. The package uses the [anndata](https://anndata.readthedocs.io/en/stable/anndata.AnnData.html) framework making it easy to integrate with other popular single-cell analysis toolkits. It includes preprocessing, phenotyping, visualization, clustering, spatial analysis and differential spatial testing. The Python-based implementation efficiently deals with large datasets of millions of cells. + +## Installation + +We strongly recommend installing `scimap` in a fresh virtual environment. + +``` +# If you have conda installed +conda create --name scimap python=3.8 +conda activate scimap +``` + +Install `scimap` directly into an activated virtual environment: + +```python +$ pip install scimap +``` + +After installation, the package can be imported as: + +```python +$ python +>>> import scimap as sm +``` + + +## Get Started + + +#### Detailed documentation of `scimap` functions and tutorials are available [here](http://scimap.xyz/). + +*SCIMAP* development is led by [Ajit Johnson Nirmal](https://ajitjohnson.com/) at the Laboratory of Systems Pharmacology, Harvard Medical School. + +## Funding +This work is supported by the following NIH grant K99-CA256497 + + + +%package -n python3-scimap +Summary: Spatial Single-Cell Analysis Toolkit +Provides: python-scimap +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-scimap +# Single-Cell Image Analysis Package +<br> + +[](https://github.com/ajitjohnson/scimap/actions/workflows/build-unix-mac-win.yml) +[](https://github.com/ajitjohnson/scimap/actions/workflows/docs.yml) +[](https://pepy.tech/project/scimap) +[](https://pypi.org/project/scimap) +[](https://pypi.org/project/scimap) +[](https://gitter.im/scimap_io/community) +[](https://zenodo.org/badge/latestdoi/271099296) + +<br> + +<img src="./docs/assets/scimap_logo.jpg" style="max-width:700px;width:100%" > + +<br> + +Scimap is a scalable toolkit for analyzing spatial molecular data. The underlying framework is generalizable to spatial datasets mapped to XY coordinates. The package uses the [anndata](https://anndata.readthedocs.io/en/stable/anndata.AnnData.html) framework making it easy to integrate with other popular single-cell analysis toolkits. It includes preprocessing, phenotyping, visualization, clustering, spatial analysis and differential spatial testing. The Python-based implementation efficiently deals with large datasets of millions of cells. + +## Installation + +We strongly recommend installing `scimap` in a fresh virtual environment. + +``` +# If you have conda installed +conda create --name scimap python=3.8 +conda activate scimap +``` + +Install `scimap` directly into an activated virtual environment: + +```python +$ pip install scimap +``` + +After installation, the package can be imported as: + +```python +$ python +>>> import scimap as sm +``` + + +## Get Started + + +#### Detailed documentation of `scimap` functions and tutorials are available [here](http://scimap.xyz/). + +*SCIMAP* development is led by [Ajit Johnson Nirmal](https://ajitjohnson.com/) at the Laboratory of Systems Pharmacology, Harvard Medical School. + +## Funding +This work is supported by the following NIH grant K99-CA256497 + + + +%package help +Summary: Development documents and examples for scimap +Provides: python3-scimap-doc +%description help +# Single-Cell Image Analysis Package +<br> + +[](https://github.com/ajitjohnson/scimap/actions/workflows/build-unix-mac-win.yml) +[](https://github.com/ajitjohnson/scimap/actions/workflows/docs.yml) +[](https://pepy.tech/project/scimap) +[](https://pypi.org/project/scimap) +[](https://pypi.org/project/scimap) +[](https://gitter.im/scimap_io/community) +[](https://zenodo.org/badge/latestdoi/271099296) + +<br> + +<img src="./docs/assets/scimap_logo.jpg" style="max-width:700px;width:100%" > + +<br> + +Scimap is a scalable toolkit for analyzing spatial molecular data. The underlying framework is generalizable to spatial datasets mapped to XY coordinates. The package uses the [anndata](https://anndata.readthedocs.io/en/stable/anndata.AnnData.html) framework making it easy to integrate with other popular single-cell analysis toolkits. It includes preprocessing, phenotyping, visualization, clustering, spatial analysis and differential spatial testing. The Python-based implementation efficiently deals with large datasets of millions of cells. + +## Installation + +We strongly recommend installing `scimap` in a fresh virtual environment. + +``` +# If you have conda installed +conda create --name scimap python=3.8 +conda activate scimap +``` + +Install `scimap` directly into an activated virtual environment: + +```python +$ pip install scimap +``` + +After installation, the package can be imported as: + +```python +$ python +>>> import scimap as sm +``` + + +## Get Started + + +#### Detailed documentation of `scimap` functions and tutorials are available [here](http://scimap.xyz/). + +*SCIMAP* development is led by [Ajit Johnson Nirmal](https://ajitjohnson.com/) at the Laboratory of Systems Pharmacology, Harvard Medical School. + +## Funding +This work is supported by the following NIH grant K99-CA256497 + + + +%prep +%autosetup -n scimap-1.1.0 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-scimap -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Fri May 05 2023 Python_Bot <Python_Bot@openeuler.org> - 1.1.0-1 +- Package Spec generated @@ -0,0 +1 @@ +c47ccdf5335273c8049302fa84c3ac92 scimap-1.1.0.tar.gz |