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authorCoprDistGit <infra@openeuler.org>2023-05-05 08:26:09 +0000
committerCoprDistGit <infra@openeuler.org>2023-05-05 08:26:09 +0000
commit00765ebc8f23f75393d34ad825d900b5ea058e58 (patch)
treee87829a1cd7de08874388bb0081896074285e8ed
parent732fa715bff70e57ea06e66aa2736b89ab035342 (diff)
automatic import of python-scimapopeneuler20.03
-rw-r--r--.gitignore1
-rw-r--r--python-scimap.spec255
-rw-r--r--sources1
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diff --git a/.gitignore b/.gitignore
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--- a/.gitignore
+++ b/.gitignore
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+/scimap-1.1.0.tar.gz
diff --git a/python-scimap.spec b/python-scimap.spec
new file mode 100644
index 0000000..666de3f
--- /dev/null
+++ b/python-scimap.spec
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+%global _empty_manifest_terminate_build 0
+Name: python-scimap
+Version: 1.1.0
+Release: 1
+Summary: Spatial Single-Cell Analysis Toolkit
+License: MIT
+URL: https://pypi.org/project/scimap/
+Source0: https://mirrors.nju.edu.cn/pypi/web/packages/dc/df/9fbc541d80ff9ced659aa755c8bc0107a29bb1e4d20f97928b3691bc64aa/scimap-1.1.0.tar.gz
+BuildArch: noarch
+
+Requires: python3-pytest
+Requires: python3-anndata
+Requires: python3-pandas
+Requires: python3-scipy
+Requires: python3-seaborn
+Requires: python3-tifffile
+Requires: python3-numpy
+Requires: python3-pytest-xvfb
+Requires: python3-matplotlib
+Requires: python3-PhenoGraph
+Requires: python3-scanpy
+Requires: python3-mkdocs
+Requires: python3-plotly
+Requires: python3-TiffFile
+Requires: python3-dask[array]
+Requires: python3-zarr
+Requires: python3-napari
+Requires: python3-numba
+Requires: python3-shapely
+Requires: python3-gensim
+Requires: python3-mkdocs-material
+Requires: python3-napari-ome-zarr
+Requires: python3-llvmlite
+Requires: python3-combat
+
+%description
+# Single-Cell Image Analysis Package
+<br>
+
+[![build: Unix-Mac-Win](https://github.com/ajitjohnson/scimap/actions/workflows/build-unix-mac-win.yml/badge.svg)](https://github.com/ajitjohnson/scimap/actions/workflows/build-unix-mac-win.yml)
+[![Docs](https://github.com/ajitjohnson/scimap/actions/workflows/docs.yml/badge.svg)](https://github.com/ajitjohnson/scimap/actions/workflows/docs.yml)
+[![Downloads](https://pepy.tech/badge/scimap)](https://pepy.tech/project/scimap)
+[![PyPI Version](https://img.shields.io/pypi/v/scimap.svg)](https://pypi.org/project/scimap)
+[![PyPI License](https://img.shields.io/pypi/l/scimap.svg)](https://pypi.org/project/scimap)
+[![Gitter chat](https://badges.gitter.im/scimap_io/community.png)](https://gitter.im/scimap_io/community)
+[![DOI](https://zenodo.org/badge/271099296.svg)](https://zenodo.org/badge/latestdoi/271099296)
+
+<br>
+
+<img src="./docs/assets/scimap_logo.jpg" style="max-width:700px;width:100%" >
+
+<br>
+
+Scimap is a scalable toolkit for analyzing spatial molecular data. The underlying framework is generalizable to spatial datasets mapped to XY coordinates. The package uses the [anndata](https://anndata.readthedocs.io/en/stable/anndata.AnnData.html) framework making it easy to integrate with other popular single-cell analysis toolkits. It includes preprocessing, phenotyping, visualization, clustering, spatial analysis and differential spatial testing. The Python-based implementation efficiently deals with large datasets of millions of cells.
+
+## Installation
+
+We strongly recommend installing `scimap` in a fresh virtual environment.
+
+```
+# If you have conda installed
+conda create --name scimap python=3.8
+conda activate scimap
+```
+
+Install `scimap` directly into an activated virtual environment:
+
+```python
+$ pip install scimap
+```
+
+After installation, the package can be imported as:
+
+```python
+$ python
+>>> import scimap as sm
+```
+
+
+## Get Started
+
+
+#### Detailed documentation of `scimap` functions and tutorials are available [here](http://scimap.xyz/).
+
+*SCIMAP* development is led by [Ajit Johnson Nirmal](https://ajitjohnson.com/) at the Laboratory of Systems Pharmacology, Harvard Medical School.
+
+## Funding
+This work is supported by the following NIH grant K99-CA256497
+
+
+
+%package -n python3-scimap
+Summary: Spatial Single-Cell Analysis Toolkit
+Provides: python-scimap
+BuildRequires: python3-devel
+BuildRequires: python3-setuptools
+BuildRequires: python3-pip
+%description -n python3-scimap
+# Single-Cell Image Analysis Package
+<br>
+
+[![build: Unix-Mac-Win](https://github.com/ajitjohnson/scimap/actions/workflows/build-unix-mac-win.yml/badge.svg)](https://github.com/ajitjohnson/scimap/actions/workflows/build-unix-mac-win.yml)
+[![Docs](https://github.com/ajitjohnson/scimap/actions/workflows/docs.yml/badge.svg)](https://github.com/ajitjohnson/scimap/actions/workflows/docs.yml)
+[![Downloads](https://pepy.tech/badge/scimap)](https://pepy.tech/project/scimap)
+[![PyPI Version](https://img.shields.io/pypi/v/scimap.svg)](https://pypi.org/project/scimap)
+[![PyPI License](https://img.shields.io/pypi/l/scimap.svg)](https://pypi.org/project/scimap)
+[![Gitter chat](https://badges.gitter.im/scimap_io/community.png)](https://gitter.im/scimap_io/community)
+[![DOI](https://zenodo.org/badge/271099296.svg)](https://zenodo.org/badge/latestdoi/271099296)
+
+<br>
+
+<img src="./docs/assets/scimap_logo.jpg" style="max-width:700px;width:100%" >
+
+<br>
+
+Scimap is a scalable toolkit for analyzing spatial molecular data. The underlying framework is generalizable to spatial datasets mapped to XY coordinates. The package uses the [anndata](https://anndata.readthedocs.io/en/stable/anndata.AnnData.html) framework making it easy to integrate with other popular single-cell analysis toolkits. It includes preprocessing, phenotyping, visualization, clustering, spatial analysis and differential spatial testing. The Python-based implementation efficiently deals with large datasets of millions of cells.
+
+## Installation
+
+We strongly recommend installing `scimap` in a fresh virtual environment.
+
+```
+# If you have conda installed
+conda create --name scimap python=3.8
+conda activate scimap
+```
+
+Install `scimap` directly into an activated virtual environment:
+
+```python
+$ pip install scimap
+```
+
+After installation, the package can be imported as:
+
+```python
+$ python
+>>> import scimap as sm
+```
+
+
+## Get Started
+
+
+#### Detailed documentation of `scimap` functions and tutorials are available [here](http://scimap.xyz/).
+
+*SCIMAP* development is led by [Ajit Johnson Nirmal](https://ajitjohnson.com/) at the Laboratory of Systems Pharmacology, Harvard Medical School.
+
+## Funding
+This work is supported by the following NIH grant K99-CA256497
+
+
+
+%package help
+Summary: Development documents and examples for scimap
+Provides: python3-scimap-doc
+%description help
+# Single-Cell Image Analysis Package
+<br>
+
+[![build: Unix-Mac-Win](https://github.com/ajitjohnson/scimap/actions/workflows/build-unix-mac-win.yml/badge.svg)](https://github.com/ajitjohnson/scimap/actions/workflows/build-unix-mac-win.yml)
+[![Docs](https://github.com/ajitjohnson/scimap/actions/workflows/docs.yml/badge.svg)](https://github.com/ajitjohnson/scimap/actions/workflows/docs.yml)
+[![Downloads](https://pepy.tech/badge/scimap)](https://pepy.tech/project/scimap)
+[![PyPI Version](https://img.shields.io/pypi/v/scimap.svg)](https://pypi.org/project/scimap)
+[![PyPI License](https://img.shields.io/pypi/l/scimap.svg)](https://pypi.org/project/scimap)
+[![Gitter chat](https://badges.gitter.im/scimap_io/community.png)](https://gitter.im/scimap_io/community)
+[![DOI](https://zenodo.org/badge/271099296.svg)](https://zenodo.org/badge/latestdoi/271099296)
+
+<br>
+
+<img src="./docs/assets/scimap_logo.jpg" style="max-width:700px;width:100%" >
+
+<br>
+
+Scimap is a scalable toolkit for analyzing spatial molecular data. The underlying framework is generalizable to spatial datasets mapped to XY coordinates. The package uses the [anndata](https://anndata.readthedocs.io/en/stable/anndata.AnnData.html) framework making it easy to integrate with other popular single-cell analysis toolkits. It includes preprocessing, phenotyping, visualization, clustering, spatial analysis and differential spatial testing. The Python-based implementation efficiently deals with large datasets of millions of cells.
+
+## Installation
+
+We strongly recommend installing `scimap` in a fresh virtual environment.
+
+```
+# If you have conda installed
+conda create --name scimap python=3.8
+conda activate scimap
+```
+
+Install `scimap` directly into an activated virtual environment:
+
+```python
+$ pip install scimap
+```
+
+After installation, the package can be imported as:
+
+```python
+$ python
+>>> import scimap as sm
+```
+
+
+## Get Started
+
+
+#### Detailed documentation of `scimap` functions and tutorials are available [here](http://scimap.xyz/).
+
+*SCIMAP* development is led by [Ajit Johnson Nirmal](https://ajitjohnson.com/) at the Laboratory of Systems Pharmacology, Harvard Medical School.
+
+## Funding
+This work is supported by the following NIH grant K99-CA256497
+
+
+
+%prep
+%autosetup -n scimap-1.1.0
+
+%build
+%py3_build
+
+%install
+%py3_install
+install -d -m755 %{buildroot}/%{_pkgdocdir}
+if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
+if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
+if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
+if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
+pushd %{buildroot}
+if [ -d usr/lib ]; then
+ find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/lib64 ]; then
+ find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/bin ]; then
+ find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/sbin ]; then
+ find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+touch doclist.lst
+if [ -d usr/share/man ]; then
+ find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
+fi
+popd
+mv %{buildroot}/filelist.lst .
+mv %{buildroot}/doclist.lst .
+
+%files -n python3-scimap -f filelist.lst
+%dir %{python3_sitelib}/*
+
+%files help -f doclist.lst
+%{_docdir}/*
+
+%changelog
+* Fri May 05 2023 Python_Bot <Python_Bot@openeuler.org> - 1.1.0-1
+- Package Spec generated
diff --git a/sources b/sources
new file mode 100644
index 0000000..d209c70
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+c47ccdf5335273c8049302fa84c3ac92 scimap-1.1.0.tar.gz