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| author | CoprDistGit <infra@openeuler.org> | 2023-05-18 06:00:26 +0000 |
|---|---|---|
| committer | CoprDistGit <infra@openeuler.org> | 2023-05-18 06:00:26 +0000 |
| commit | ca65c8053c6d4d5f7009be490dd0321dc1ca882c (patch) | |
| tree | 17d460ec99b1bbbec7095bc3391b2370cbbb064d | |
| parent | 8427926c8e576e14b80326b804de4873a20d8985 (diff) | |
automatic import of python-sigproextractor
| -rw-r--r-- | .gitignore | 1 | ||||
| -rw-r--r-- | python-sigproextractor.spec | 112 | ||||
| -rw-r--r-- | sources | 1 |
3 files changed, 114 insertions, 0 deletions
@@ -0,0 +1 @@ +/sigproextractor-0.0.5.77.tar.gz diff --git a/python-sigproextractor.spec b/python-sigproextractor.spec new file mode 100644 index 0000000..1dd09ef --- /dev/null +++ b/python-sigproextractor.spec @@ -0,0 +1,112 @@ +%global _empty_manifest_terminate_build 0 +Name: python-sigproextractor +Version: 0.0.5.77 +Release: 1 +Summary: Extracts mutational signatures from mutational catalogues +License: UCSD +URL: https://github.com/AlexandrovLab/SigProfilerExtractor.git +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/9e/ff/8f97e33c98764d462f3df1198d565b28e7099edc93f60ddc9226a63d9f44/sigproextractor-0.0.5.77.tar.gz +BuildArch: noarch + +Requires: python3-matplotlib +Requires: python3-scipy +Requires: python3-torch +Requires: python3-numpy +Requires: python3-pandas +Requires: python3-nimfa +Requires: python3-SigProfilerMatrixGenerator +Requires: python3-sigProfilerPlotting +Requires: python3-pillow +Requires: python3-statsmodels +Requires: python3-scikit-learn +Requires: python3-psutil +Requires: python3-xlrd + +%description + >>> from sigproextractor import sigpro as sig + >>> path_to_example_table = sig.importdata("table") + >>> data = path_to_example_table + This "data" variable can be used as a parameter of the "project" argument of the sigProfilerExtractor function. + To get help on the parameters and outputs of the "importdata" function, please write down the following line: + >>> help(sig.importdata) +### sigProfilerExtractor + Extracts mutational signatures from an array of samples. + sigProfilerExtractor(input_type, out_put, project, refgen="GRCh37", genome_build = "GRCh37", startProcess=1, endProcess=10, totalIterations=8, + cpu=-1, hierarchy = False, mtype = ["default"],exome = False) + +%package -n python3-sigproextractor +Summary: Extracts mutational signatures from mutational catalogues +Provides: python-sigproextractor +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-sigproextractor + >>> from sigproextractor import sigpro as sig + >>> path_to_example_table = sig.importdata("table") + >>> data = path_to_example_table + This "data" variable can be used as a parameter of the "project" argument of the sigProfilerExtractor function. + To get help on the parameters and outputs of the "importdata" function, please write down the following line: + >>> help(sig.importdata) +### sigProfilerExtractor + Extracts mutational signatures from an array of samples. + sigProfilerExtractor(input_type, out_put, project, refgen="GRCh37", genome_build = "GRCh37", startProcess=1, endProcess=10, totalIterations=8, + cpu=-1, hierarchy = False, mtype = ["default"],exome = False) + +%package help +Summary: Development documents and examples for sigproextractor +Provides: python3-sigproextractor-doc +%description help + >>> from sigproextractor import sigpro as sig + >>> path_to_example_table = sig.importdata("table") + >>> data = path_to_example_table + This "data" variable can be used as a parameter of the "project" argument of the sigProfilerExtractor function. + To get help on the parameters and outputs of the "importdata" function, please write down the following line: + >>> help(sig.importdata) +### sigProfilerExtractor + Extracts mutational signatures from an array of samples. + sigProfilerExtractor(input_type, out_put, project, refgen="GRCh37", genome_build = "GRCh37", startProcess=1, endProcess=10, totalIterations=8, + cpu=-1, hierarchy = False, mtype = ["default"],exome = False) + +%prep +%autosetup -n sigproextractor-0.0.5.77 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-sigproextractor -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Thu May 18 2023 Python_Bot <Python_Bot@openeuler.org> - 0.0.5.77-1 +- Package Spec generated @@ -0,0 +1 @@ +e4c9ada90d0b451e655e3e3877b8f6a6 sigproextractor-0.0.5.77.tar.gz |
