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authorCoprDistGit <infra@openeuler.org>2023-05-18 06:00:26 +0000
committerCoprDistGit <infra@openeuler.org>2023-05-18 06:00:26 +0000
commitca65c8053c6d4d5f7009be490dd0321dc1ca882c (patch)
tree17d460ec99b1bbbec7095bc3391b2370cbbb064d /python-sigproextractor.spec
parent8427926c8e576e14b80326b804de4873a20d8985 (diff)
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+%global _empty_manifest_terminate_build 0
+Name: python-sigproextractor
+Version: 0.0.5.77
+Release: 1
+Summary: Extracts mutational signatures from mutational catalogues
+License: UCSD
+URL: https://github.com/AlexandrovLab/SigProfilerExtractor.git
+Source0: https://mirrors.nju.edu.cn/pypi/web/packages/9e/ff/8f97e33c98764d462f3df1198d565b28e7099edc93f60ddc9226a63d9f44/sigproextractor-0.0.5.77.tar.gz
+BuildArch: noarch
+
+Requires: python3-matplotlib
+Requires: python3-scipy
+Requires: python3-torch
+Requires: python3-numpy
+Requires: python3-pandas
+Requires: python3-nimfa
+Requires: python3-SigProfilerMatrixGenerator
+Requires: python3-sigProfilerPlotting
+Requires: python3-pillow
+Requires: python3-statsmodels
+Requires: python3-scikit-learn
+Requires: python3-psutil
+Requires: python3-xlrd
+
+%description
+ >>> from sigproextractor import sigpro as sig
+ >>> path_to_example_table = sig.importdata("table")
+ >>> data = path_to_example_table
+ This "data" variable can be used as a parameter of the "project" argument of the sigProfilerExtractor function.
+ To get help on the parameters and outputs of the "importdata" function, please write down the following line:
+ >>> help(sig.importdata)
+### sigProfilerExtractor
+ Extracts mutational signatures from an array of samples.
+ sigProfilerExtractor(input_type, out_put, project, refgen="GRCh37", genome_build = "GRCh37", startProcess=1, endProcess=10, totalIterations=8,
+ cpu=-1, hierarchy = False, mtype = ["default"],exome = False)
+
+%package -n python3-sigproextractor
+Summary: Extracts mutational signatures from mutational catalogues
+Provides: python-sigproextractor
+BuildRequires: python3-devel
+BuildRequires: python3-setuptools
+BuildRequires: python3-pip
+%description -n python3-sigproextractor
+ >>> from sigproextractor import sigpro as sig
+ >>> path_to_example_table = sig.importdata("table")
+ >>> data = path_to_example_table
+ This "data" variable can be used as a parameter of the "project" argument of the sigProfilerExtractor function.
+ To get help on the parameters and outputs of the "importdata" function, please write down the following line:
+ >>> help(sig.importdata)
+### sigProfilerExtractor
+ Extracts mutational signatures from an array of samples.
+ sigProfilerExtractor(input_type, out_put, project, refgen="GRCh37", genome_build = "GRCh37", startProcess=1, endProcess=10, totalIterations=8,
+ cpu=-1, hierarchy = False, mtype = ["default"],exome = False)
+
+%package help
+Summary: Development documents and examples for sigproextractor
+Provides: python3-sigproextractor-doc
+%description help
+ >>> from sigproextractor import sigpro as sig
+ >>> path_to_example_table = sig.importdata("table")
+ >>> data = path_to_example_table
+ This "data" variable can be used as a parameter of the "project" argument of the sigProfilerExtractor function.
+ To get help on the parameters and outputs of the "importdata" function, please write down the following line:
+ >>> help(sig.importdata)
+### sigProfilerExtractor
+ Extracts mutational signatures from an array of samples.
+ sigProfilerExtractor(input_type, out_put, project, refgen="GRCh37", genome_build = "GRCh37", startProcess=1, endProcess=10, totalIterations=8,
+ cpu=-1, hierarchy = False, mtype = ["default"],exome = False)
+
+%prep
+%autosetup -n sigproextractor-0.0.5.77
+
+%build
+%py3_build
+
+%install
+%py3_install
+install -d -m755 %{buildroot}/%{_pkgdocdir}
+if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
+if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
+if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
+if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
+pushd %{buildroot}
+if [ -d usr/lib ]; then
+ find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/lib64 ]; then
+ find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/bin ]; then
+ find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/sbin ]; then
+ find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+touch doclist.lst
+if [ -d usr/share/man ]; then
+ find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
+fi
+popd
+mv %{buildroot}/filelist.lst .
+mv %{buildroot}/doclist.lst .
+
+%files -n python3-sigproextractor -f filelist.lst
+%dir %{python3_sitelib}/*
+
+%files help -f doclist.lst
+%{_docdir}/*
+
+%changelog
+* Thu May 18 2023 Python_Bot <Python_Bot@openeuler.org> - 0.0.5.77-1
+- Package Spec generated