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%global _empty_manifest_terminate_build 0
Name: python-sigproextractor
Version: 0.0.5.77
Release: 1
Summary: Extracts mutational signatures from mutational catalogues
License: UCSD
URL: https://github.com/AlexandrovLab/SigProfilerExtractor.git
Source0: https://mirrors.nju.edu.cn/pypi/web/packages/9e/ff/8f97e33c98764d462f3df1198d565b28e7099edc93f60ddc9226a63d9f44/sigproextractor-0.0.5.77.tar.gz
BuildArch: noarch
Requires: python3-matplotlib
Requires: python3-scipy
Requires: python3-torch
Requires: python3-numpy
Requires: python3-pandas
Requires: python3-nimfa
Requires: python3-SigProfilerMatrixGenerator
Requires: python3-sigProfilerPlotting
Requires: python3-pillow
Requires: python3-statsmodels
Requires: python3-scikit-learn
Requires: python3-psutil
Requires: python3-xlrd
%description
>>> from sigproextractor import sigpro as sig
>>> path_to_example_table = sig.importdata("table")
>>> data = path_to_example_table
This "data" variable can be used as a parameter of the "project" argument of the sigProfilerExtractor function.
To get help on the parameters and outputs of the "importdata" function, please write down the following line:
>>> help(sig.importdata)
### sigProfilerExtractor
Extracts mutational signatures from an array of samples.
sigProfilerExtractor(input_type, out_put, project, refgen="GRCh37", genome_build = "GRCh37", startProcess=1, endProcess=10, totalIterations=8,
cpu=-1, hierarchy = False, mtype = ["default"],exome = False)
%package -n python3-sigproextractor
Summary: Extracts mutational signatures from mutational catalogues
Provides: python-sigproextractor
BuildRequires: python3-devel
BuildRequires: python3-setuptools
BuildRequires: python3-pip
%description -n python3-sigproextractor
>>> from sigproextractor import sigpro as sig
>>> path_to_example_table = sig.importdata("table")
>>> data = path_to_example_table
This "data" variable can be used as a parameter of the "project" argument of the sigProfilerExtractor function.
To get help on the parameters and outputs of the "importdata" function, please write down the following line:
>>> help(sig.importdata)
### sigProfilerExtractor
Extracts mutational signatures from an array of samples.
sigProfilerExtractor(input_type, out_put, project, refgen="GRCh37", genome_build = "GRCh37", startProcess=1, endProcess=10, totalIterations=8,
cpu=-1, hierarchy = False, mtype = ["default"],exome = False)
%package help
Summary: Development documents and examples for sigproextractor
Provides: python3-sigproextractor-doc
%description help
>>> from sigproextractor import sigpro as sig
>>> path_to_example_table = sig.importdata("table")
>>> data = path_to_example_table
This "data" variable can be used as a parameter of the "project" argument of the sigProfilerExtractor function.
To get help on the parameters and outputs of the "importdata" function, please write down the following line:
>>> help(sig.importdata)
### sigProfilerExtractor
Extracts mutational signatures from an array of samples.
sigProfilerExtractor(input_type, out_put, project, refgen="GRCh37", genome_build = "GRCh37", startProcess=1, endProcess=10, totalIterations=8,
cpu=-1, hierarchy = False, mtype = ["default"],exome = False)
%prep
%autosetup -n sigproextractor-0.0.5.77
%build
%py3_build
%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .
%files -n python3-sigproextractor -f filelist.lst
%dir %{python3_sitelib}/*
%files help -f doclist.lst
%{_docdir}/*
%changelog
* Thu May 18 2023 Python_Bot <Python_Bot@openeuler.org> - 0.0.5.77-1
- Package Spec generated
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