From 0843a89b53b6a9d7572728e9962a39f135a346fa Mon Sep 17 00:00:00 2001 From: CoprDistGit Date: Thu, 18 May 2023 06:40:13 +0000 Subject: automatic import of python-sleepecg --- python-sleepecg.spec | 299 +++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 299 insertions(+) create mode 100644 python-sleepecg.spec (limited to 'python-sleepecg.spec') diff --git a/python-sleepecg.spec b/python-sleepecg.spec new file mode 100644 index 0000000..c48fa55 --- /dev/null +++ b/python-sleepecg.spec @@ -0,0 +1,299 @@ +%global _empty_manifest_terminate_build 0 +Name: python-sleepecg +Version: 0.5.4 +Release: 1 +Summary: A package for sleep stage classification using ECG data +License: BSD 3-Clause License +URL: https://github.com/cbrnr/sleepecg +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/13/06/d20abc96a026eb5dd3939735035baf0925f199f0ec0d655187ba82dcbf8f/sleepecg-0.5.4.tar.gz + +Requires: python3-numpy +Requires: python3-PyYAML +Requires: python3-requests +Requires: python3-scipy +Requires: python3-tqdm +Requires: python3-mne +Requires: python3-pyEDFlib +Requires: python3-wfdb +Requires: python3-numba +Requires: python3-black +Requires: python3-flake8 +Requires: python3-joblib +Requires: python3-matplotlib +Requires: python3-mkdocs-material +Requires: python3-mkdocstrings-python +Requires: python3-mne +Requires: python3-mypy +Requires: python3-pre-commit +Requires: python3-pyEDFlib +Requires: python3-pytest +Requires: python3-setuptools +Requires: python3-sphinx +Requires: python3-wfdb +Requires: python3-numba +Requires: python3-tensorflow +Requires: python3-mkdocs-material +Requires: python3-mkdocstrings-python +Requires: python3-joblib +Requires: python3-matplotlib +Requires: python3-mne +Requires: python3-wfdb +Requires: python3-numba +Requires: python3-tensorflow + +%description +![Python](https://img.shields.io/pypi/pyversions/sleepecg.svg?logo=python&logoColor=white) +[![PyPI](https://img.shields.io/pypi/v/sleepecg)](https://pypi.org/project/sleepecg/) +[![conda-forge](https://img.shields.io/conda/v/conda-forge/sleepecg.svg?label=conda-forge)](https://anaconda.org/conda-forge/sleepecg) +[![Docs](https://readthedocs.org/projects/sleepecg/badge/?version=latest)](https://sleepecg.readthedocs.io/en/stable/index.html) +[![License](https://img.shields.io/github/license/cbrnr/sleepecg)](LICENSE) + +## SleepECG +SleepECG provides tools for sleep stage classification when [EEG](https://en.wikipedia.org/wiki/Electroencephalography) signals are not available. Based only on [ECG](https://en.wikipedia.org/wiki/Electrocardiography) (and to a lesser extent also movement data), SleepECG provides functions for + +- downloading and reading open polysomnography datasets, +- detecting heartbeats from ECG signals, and +- classifying sleep stages (which includes preprocessing, feature extraction, and classification). + +### Documentation +Documentation for SleepECG is available on [Read the Docs](https://sleepecg.readthedocs.io/en/stable/index.html). + +### Changelog +Check out the [changelog](https://github.com/cbrnr/sleepecg/blob/main/CHANGELOG.md) to learn what we added, changed, or fixed. + +### Dependencies +SleepECG requires Python ≥ 3.8 and the following packages: + +- [numpy](http://www.numpy.org/) ≥ 1.20.0 +- [requests](https://requests.readthedocs.io/en/latest/) ≥ 2.25.0 +- [scipy](https://scipy.org/) ≥ 1.7.0 +- [tqdm](https://tqdm.github.io/) ≥ 4.60.0 +- [PyYAML](https://pyyaml.org/) ≥ 5.4.0 + +Optional dependencies provide additional features: + +- [joblib](https://joblib.readthedocs.io/en/latest/) ≥ 1.0.0 (parallelized feature extraction) +- [matplotlib](https://matplotlib.org/) ≥ 3.5.0 (plot ECG time courses, hypnograms, and confusion matrices) +- [mne](https://mne.tools/stable/index.html) ≥ 1.0.0 (read data from [MESA](https://sleepdata.org/datasets/mesa) and [SHHS](https://sleepdata.org/datasets/shhs)) +- [numba](https://numba.pydata.org/) ≥ 0.55.0 (JIT-compiled heartbeat detector) +- [tensorflow](https://www.tensorflow.org/) ≥ 2.7.0 (sleep stage classification with Keras models) +- [wfdb](https://github.com/MIT-LCP/wfdb-python/) ≥ 3.4.0 (read data from [SLPDB](https://physionet.org/content/slpdb), [MITDB](https://physionet.org/content/mitdb), and [LTDB](https://physionet.org/content/ltdb)) + +### Installation +SleepECG is available on PyPI and can be installed with [pip](https://pip.pypa.io/en/stable/): + +``` +pip install sleepecg +``` + +Alternatively, an unofficial [conda](https://docs.conda.io/en/latest/) package is available: + +``` +conda install -c conda-forge sleepecg +``` + +SleepECG with all optional dependencies can be installed with the following command: + +``` +pip install sleepecg[full] +``` + +If you want the latest development version, use the following command: + +``` +pip install git+https://github.com/cbrnr/sleepecg +``` + +### Contributing +The [contributing guide](https://github.com/cbrnr/sleepecg/blob/main/CONTRIBUTING.md) contains detailed instructions on how to contribute to SleepECG. + + +%package -n python3-sleepecg +Summary: A package for sleep stage classification using ECG data +Provides: python-sleepecg +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +BuildRequires: python3-cffi +BuildRequires: gcc +BuildRequires: gdb +%description -n python3-sleepecg +![Python](https://img.shields.io/pypi/pyversions/sleepecg.svg?logo=python&logoColor=white) +[![PyPI](https://img.shields.io/pypi/v/sleepecg)](https://pypi.org/project/sleepecg/) +[![conda-forge](https://img.shields.io/conda/v/conda-forge/sleepecg.svg?label=conda-forge)](https://anaconda.org/conda-forge/sleepecg) +[![Docs](https://readthedocs.org/projects/sleepecg/badge/?version=latest)](https://sleepecg.readthedocs.io/en/stable/index.html) +[![License](https://img.shields.io/github/license/cbrnr/sleepecg)](LICENSE) + +## SleepECG +SleepECG provides tools for sleep stage classification when [EEG](https://en.wikipedia.org/wiki/Electroencephalography) signals are not available. Based only on [ECG](https://en.wikipedia.org/wiki/Electrocardiography) (and to a lesser extent also movement data), SleepECG provides functions for + +- downloading and reading open polysomnography datasets, +- detecting heartbeats from ECG signals, and +- classifying sleep stages (which includes preprocessing, feature extraction, and classification). + +### Documentation +Documentation for SleepECG is available on [Read the Docs](https://sleepecg.readthedocs.io/en/stable/index.html). + +### Changelog +Check out the [changelog](https://github.com/cbrnr/sleepecg/blob/main/CHANGELOG.md) to learn what we added, changed, or fixed. + +### Dependencies +SleepECG requires Python ≥ 3.8 and the following packages: + +- [numpy](http://www.numpy.org/) ≥ 1.20.0 +- [requests](https://requests.readthedocs.io/en/latest/) ≥ 2.25.0 +- [scipy](https://scipy.org/) ≥ 1.7.0 +- [tqdm](https://tqdm.github.io/) ≥ 4.60.0 +- [PyYAML](https://pyyaml.org/) ≥ 5.4.0 + +Optional dependencies provide additional features: + +- [joblib](https://joblib.readthedocs.io/en/latest/) ≥ 1.0.0 (parallelized feature extraction) +- [matplotlib](https://matplotlib.org/) ≥ 3.5.0 (plot ECG time courses, hypnograms, and confusion matrices) +- [mne](https://mne.tools/stable/index.html) ≥ 1.0.0 (read data from [MESA](https://sleepdata.org/datasets/mesa) and [SHHS](https://sleepdata.org/datasets/shhs)) +- [numba](https://numba.pydata.org/) ≥ 0.55.0 (JIT-compiled heartbeat detector) +- [tensorflow](https://www.tensorflow.org/) ≥ 2.7.0 (sleep stage classification with Keras models) +- [wfdb](https://github.com/MIT-LCP/wfdb-python/) ≥ 3.4.0 (read data from [SLPDB](https://physionet.org/content/slpdb), [MITDB](https://physionet.org/content/mitdb), and [LTDB](https://physionet.org/content/ltdb)) + +### Installation +SleepECG is available on PyPI and can be installed with [pip](https://pip.pypa.io/en/stable/): + +``` +pip install sleepecg +``` + +Alternatively, an unofficial [conda](https://docs.conda.io/en/latest/) package is available: + +``` +conda install -c conda-forge sleepecg +``` + +SleepECG with all optional dependencies can be installed with the following command: + +``` +pip install sleepecg[full] +``` + +If you want the latest development version, use the following command: + +``` +pip install git+https://github.com/cbrnr/sleepecg +``` + +### Contributing +The [contributing guide](https://github.com/cbrnr/sleepecg/blob/main/CONTRIBUTING.md) contains detailed instructions on how to contribute to SleepECG. + + +%package help +Summary: Development documents and examples for sleepecg +Provides: python3-sleepecg-doc +%description help +![Python](https://img.shields.io/pypi/pyversions/sleepecg.svg?logo=python&logoColor=white) +[![PyPI](https://img.shields.io/pypi/v/sleepecg)](https://pypi.org/project/sleepecg/) +[![conda-forge](https://img.shields.io/conda/v/conda-forge/sleepecg.svg?label=conda-forge)](https://anaconda.org/conda-forge/sleepecg) +[![Docs](https://readthedocs.org/projects/sleepecg/badge/?version=latest)](https://sleepecg.readthedocs.io/en/stable/index.html) +[![License](https://img.shields.io/github/license/cbrnr/sleepecg)](LICENSE) + +## SleepECG +SleepECG provides tools for sleep stage classification when [EEG](https://en.wikipedia.org/wiki/Electroencephalography) signals are not available. Based only on [ECG](https://en.wikipedia.org/wiki/Electrocardiography) (and to a lesser extent also movement data), SleepECG provides functions for + +- downloading and reading open polysomnography datasets, +- detecting heartbeats from ECG signals, and +- classifying sleep stages (which includes preprocessing, feature extraction, and classification). + +### Documentation +Documentation for SleepECG is available on [Read the Docs](https://sleepecg.readthedocs.io/en/stable/index.html). + +### Changelog +Check out the [changelog](https://github.com/cbrnr/sleepecg/blob/main/CHANGELOG.md) to learn what we added, changed, or fixed. + +### Dependencies +SleepECG requires Python ≥ 3.8 and the following packages: + +- [numpy](http://www.numpy.org/) ≥ 1.20.0 +- [requests](https://requests.readthedocs.io/en/latest/) ≥ 2.25.0 +- [scipy](https://scipy.org/) ≥ 1.7.0 +- [tqdm](https://tqdm.github.io/) ≥ 4.60.0 +- [PyYAML](https://pyyaml.org/) ≥ 5.4.0 + +Optional dependencies provide additional features: + +- [joblib](https://joblib.readthedocs.io/en/latest/) ≥ 1.0.0 (parallelized feature extraction) +- [matplotlib](https://matplotlib.org/) ≥ 3.5.0 (plot ECG time courses, hypnograms, and confusion matrices) +- [mne](https://mne.tools/stable/index.html) ≥ 1.0.0 (read data from [MESA](https://sleepdata.org/datasets/mesa) and [SHHS](https://sleepdata.org/datasets/shhs)) +- [numba](https://numba.pydata.org/) ≥ 0.55.0 (JIT-compiled heartbeat detector) +- [tensorflow](https://www.tensorflow.org/) ≥ 2.7.0 (sleep stage classification with Keras models) +- [wfdb](https://github.com/MIT-LCP/wfdb-python/) ≥ 3.4.0 (read data from [SLPDB](https://physionet.org/content/slpdb), [MITDB](https://physionet.org/content/mitdb), and [LTDB](https://physionet.org/content/ltdb)) + +### Installation +SleepECG is available on PyPI and can be installed with [pip](https://pip.pypa.io/en/stable/): + +``` +pip install sleepecg +``` + +Alternatively, an unofficial [conda](https://docs.conda.io/en/latest/) package is available: + +``` +conda install -c conda-forge sleepecg +``` + +SleepECG with all optional dependencies can be installed with the following command: + +``` +pip install sleepecg[full] +``` + +If you want the latest development version, use the following command: + +``` +pip install git+https://github.com/cbrnr/sleepecg +``` + +### Contributing +The [contributing guide](https://github.com/cbrnr/sleepecg/blob/main/CONTRIBUTING.md) contains detailed instructions on how to contribute to SleepECG. + + +%prep +%autosetup -n sleepecg-0.5.4 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-sleepecg -f filelist.lst +%dir %{python3_sitearch}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Thu May 18 2023 Python_Bot - 0.5.4-1 +- Package Spec generated -- cgit v1.2.3